Experiment set16S256 for Agrobacterium fabrum C58

Compare to:

AgroPhage_F04

200 most important genes:

  gene name fitness t score description  
Atu0876 -4.9 -2.5 superoxide dismutase compare
Atu8054 -4.4 -1.3 hypothetical protein compare
Atu2484 -3.0 -1.1 hypothetical protein compare
Atu3121 -2.9 -1.1 cold shock protein compare
Atu2633 -2.9 -2.0 RhtB family transporter compare
Atu2464 -2.5 -2.7 formyltetrahydrofolate deformylase compare
Atu4161 -2.5 -1.4 hypothetical protein compare
Atu8087 -2.4 -1.0 putative peptidoglycan binding protein compare
Atu1688 -2.3 -7.2 indole-3-glycerol-phosphate synthase compare
Atu2432 -2.2 -1.9 hypothetical protein compare
Atu3598 -2.2 -1.1 thiol:disulfide interchange protein compare
Atu3182 -2.1 -2.1 hypothetical protein compare
Atu0031 -2.1 -0.9 PTS system, IIA component compare
Atu4540 -2.0 -2.3 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2067 -2.0 -0.8 hypothetical protein compare
Atu8162 -1.9 -1.1 hypothetical protein compare
Atu1323 -1.9 -1.7 hypothetical protein compare
Atu0141 -1.8 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu1009 -1.7 -1.9 hypothetical protein compare
Atu2335 -1.6 -1.5 hypothetical protein compare
Atu0101 -1.6 -2.6 cytochrome c compare
Atu0606 -1.5 -1.9 hypothetical protein compare
Atu2380 -1.5 -1.6 hypothetical protein compare
Atu1439 -1.5 -1.4 hypothetical protein compare
Atu6036 -1.5 -1.0 entry-exclusion protein compare
Atu0422 -1.5 -1.4 ABC transporter, membrane spanning protein compare
Atu3415 -1.5 -3.8 ABC transporter substrate binding protein compare
Atu6098 -1.5 -0.6 transcriptional regulator, HTH family compare
Atu8088 -1.5 -1.4 hypothetical protein compare
Atu0941 -1.4 -0.7 hypothetical protein compare
Atu3583 -1.4 -3.0 hypothetical protein compare
Atu3647 -1.4 -2.0 hypothetical protein compare
Atu3336 -1.4 -1.3 hypothetical protein compare
Atu1667 -1.3 -1.1 hypothetical protein compare
Atu0556 -1.3 -3.1 hypothetical protein compare
Atu4677 -1.3 -1.0 hypothetical protein compare
Atu0170 -1.3 -3.1 hypothetical protein compare
Atu0640 -1.3 -2.5 hypothetical protein compare
Atu0041 -1.3 -1.3 glutamine amidotransferase compare
Atu1874 -1.3 -1.7 RecA protein compare
Atu3663 -1.3 -1.2 hypothetical protein compare
Atu5451 -1.2 -1.0 hypothetical protein compare
Atu8155 -1.2 -2.7 hypothetical protein compare
Atu6165 -1.2 -1.0 hypothetical protein compare
Atu1952 -1.2 -1.1 hypothetical protein compare
Atu3493 -1.2 -1.9 non-heme haloperoxidase compare
Atu2433 -1.2 -0.8 hypothetical protein compare
Atu0107 -1.2 -1.3 hypothetical protein compare
Atu2059 -1.2 -2.9 transcriptional regulator, TetR family compare
Atu4342 -1.1 -2.2 hypothetical protein compare
Atu2832 -1.1 -1.5 tRNA modification GTPase compare
Atu2344 -1.1 -1.1 lactoylglutathione lyase compare
Atu2578 -1.1 -2.9 cAMP-dependent protein kinase regulatory subunit compare
Atu8161 -1.1 -1.0 hypothetical protein compare
Atu8176 -1.1 -1.1 hypothetical protein compare
Atu2640 -1.1 -2.1 hypothetical protein compare
Atu3632 -1.1 -1.8 hypothetical protein compare
Atu2193 -1.1 -0.5 hypothetical protein compare
Atu3387 -1.1 -1.6 sigma factor compare
Atu0641 -1.1 -1.8 hypothetical protein compare
Atu2294 -1.1 -1.3 aminoglycoside N6'-acetyltransferase compare
Atu0504 -1.0 -1.5 hypothetical protein compare
Atu6173 -1.0 -2.9 component of type IV secretion system compare
Atu0976 -1.0 -0.9 cycL protein compare
Atu1970 -1.0 -1.5 hypothetical protein compare
Atu5152 -1.0 -1.9 hypothetical protein compare
Atu1904 -1.0 -2.1 transcriptional regulator compare
Atu4749 -1.0 -2.9 fructose transport system kinase compare
Atu6189 -1.0 -0.6 protein secretion chaperone compare
Atu1686 -1.0 -5.0 peptidyl-prolyl cis-trans isomerse D compare
Atu8191 -1.0 -1.0 hypothetical protein compare
Atu0184 -1.0 -0.9 glucokinase compare
Atu0538 -1.0 -2.0 hypothetical protein compare
Atu4605 -1.0 -1.2 IS3 family transposase compare
Atu0678 -1.0 -1.9 histidyl-tRNA synthetase compare
Atu4671 -1.0 -1.6 response regulator compare
Atu1204 -1.0 -2.7 potassium uptake protein compare
Atu3697 -1.0 -2.7 ATP-dependent protease LA 2 compare
Atu1354 -1.0 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1189 -0.9 -1.5 hypothetical protein compare
Atu0029 -0.9 -2.0 S-adenosylhomocysteine hydrolase compare
Atu1445 -0.9 -2.7 two component sensor kinase compare
Atu4068 -0.9 -1.6 sarcosine oxidase delta subunit compare
Atu1687 -0.9 -3.1 anthranilate phosphoribosyltransferase compare
Atu2017 -0.9 -0.6 hypothetical protein compare
Atu3014 -0.9 -1.2 hypothetical protein compare
Atu1836 -0.9 -0.8 hypothetical protein compare
Atu2662 -0.9 -0.8 acetyltransferase compare
Atu4586 -0.9 -2.7 choloylglycine hydrolase family protein compare
Atu0795 -0.9 -1.1 hypothetical protein compare
Atu3829 -0.9 -4.1 LysR family transcriptional regulator compare
Atu1997 -0.9 -3.1 sulfite reductase compare
Atu3394 -0.9 -1.6 iron ABC transporter ATPase compare
Atu5164 -0.9 -0.6 type IV secretion protein AvhB3 compare
Atu1638 -0.9 -2.6 hypothetical protein compare
Atu2746 -0.9 -2.0 hypothetical protein compare
Atu1125 -0.9 -1.5 ABC transporter, membrane spanning protein compare
Atu3575 -0.9 -2.6 xylose ABC transporter permease compare
Atu3483 -0.9 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu8034 -0.9 -1.1 hypothetical protein compare
Atu0690 -0.9 -1.2 hypothetical protein compare
Atu4223 -0.9 -0.8 sarcosine oxidase delta subunit compare
Atu5540 -0.9 -0.6 hypothetical protein compare
Atu3861 -0.9 -2.7 acyl-CoA hydrolase compare
Atu5163 -0.9 -1.6 type IV secretion protein AvhB2 compare
Atu3926 -0.8 -2.2 translation initiation inhibitor compare
Atu3446 -0.8 -2.3 monooxygenase compare
Atu3460 -0.8 -1.9 RhtB family transporter compare
Atu4518 -0.8 -2.6 branched chain amino acid ABC transporter permease compare
Atu3270 -0.8 -1.4 hypothetical protein compare
Atu1213 -0.8 -1.1 hypothetical protein compare
Atu4290 -0.8 -1.2 hypothetical protein compare
Atu4407 -0.8 -1.6 periplasmic nitrate reductase, NapD protein compare
Atu0152 -0.8 -1.0 hypothetical protein compare
Atu0043 -0.8 -0.7 imidazoleglycerol-phosphate dehydratase compare
Atu1223 -0.8 -0.6 hypothetical protein compare
Atu2648 -0.8 -1.7 hypothetical protein compare
Atu1437 -0.8 -2.2 hypothetical protein compare
Atu1741 -0.8 -2.3 hypothetical protein compare
Atu2146 -0.8 -1.4 hypothetical protein compare
Atu1085 -0.8 -2.0 transcriptional regulator, MarR family compare
Atu4338 -0.8 -1.7 hypothetical protein compare
Atu1701 -0.8 -0.7 protein-L-isoaspartate O-methyltransferase compare
Atu8147 -0.8 -3.1 hypothetical protein compare
Atu0257 -0.8 -3.8 hypothetical protein compare
Atu3461 -0.8 -0.9 GntR family transcriptional regulator compare
Atu3887 -0.8 -1.6 small heat shock protein compare
Atu2289 -0.8 -3.6 anthranilate synthase component I and II compare
Atu2378 -0.8 -1.1 hypothetical protein compare
Atu8052 -0.7 -0.7 hypothetical protein compare
Atu1446 -0.7 -0.6 two component response regulator compare
Atu8194 -0.7 -1.8 hypothetical protein compare
Atu5141 -0.7 -3.2 AraC family transcriptional regulator compare
Atu2671 -0.7 -2.5 ABC transporter, membrane spanning protein compare
Atu1558 -0.7 -1.3 permease compare
Atu0051 -0.7 -1.6 two component sensor kinase compare
Atu3264 -0.7 -2.2 IclR family transcriptional regulator compare
Atu2620 -0.7 -0.6 hypothetical protein compare
Atu3518 -0.7 -2.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu6158 -0.7 -2.2 conserved hypothetical protein compare
Atu8117 -0.7 -1.7 hypothetical protein compare
Atu3919 -0.7 -2.2 hypothetical protein compare
Atu0105 -0.7 -1.7 hypothetical protein compare
Atu1639 -0.7 -1.4 hypothetical protein compare
Atu0332 -0.7 -2.5 RNA polymerase sigma-54 factor compare
Atu2298 -0.7 -2.1 hypothetical protein compare
Atu0996 -0.7 -1.8 zinc-binding dehydrogenase compare
Atu2220 -0.7 -2.0 hypothetical protein compare
Atu4791 -0.7 -1.2 hypothetical protein compare
Atu2768 -0.7 -1.8 hypothetical protein compare
Atu2349 -0.7 -0.8 hypothetical protein compare
Atu1329 -0.7 -2.2 leucyl/phenylalanyl-tRNA-protein transferase compare
Atu1653 -0.7 -1.9 hypothetical protein compare
Atu2191 -0.7 -1.0 transcriptional regulator, LysR family compare
Atu1752 -0.7 -1.3 hypothetical protein compare
Atu2043 -0.7 -2.1 htrA family protein compare
Atu0736 -0.7 -2.1 hemolysin compare
Atu4133 -0.7 -1.0 hypothetical protein compare
Atu6096 -0.6 -2.3 conserved hypothetical protein compare
Atu3291 -0.6 -1.8 Lpr family transcriptional regulator compare
Atu1216 -0.6 -1.9 alanyl-tRNA synthetase compare
Atu8169 -0.6 -1.6 hypothetical protein compare
Atu0050 -0.6 -1.7 two component response regulator compare
Atu8159 -0.6 -1.2 hypothetical protein compare
Atu8095 -0.6 -2.5 hypothetical protein compare
Atu1730 -0.6 -2.2 hypothetical protein compare
Atu2074 -0.6 -1.8 hypothetical protein compare
Atu2145 -0.6 -2.3 transcriptional regulator, RpiR family compare
Atu3189 -0.6 -2.2 hypothetical protein compare
Atu3744 -0.6 -2.6 ABC transporter permease compare
Atu5160 -0.6 -1.0 transcriptional regulator protein compare
Atu3338 -0.6 -2.6 trehalose/maltose ABC transporter substrate-binding protein compare
Atu0767 -0.6 -1.6 cytochrome c oxidase subunit II compare
Atu4196 -0.6 -2.1 hypothetical protein compare
Atu3824 -0.6 -2.4 hypothetical protein compare
Atu1861 -0.6 -3.0 transporter compare
Atu2225 -0.6 -1.9 transcriptional regulator compare
Atu3491 -0.6 -0.8 hypothetical protein compare
Atu1729 -0.6 -1.7 putative molybdenum cofactor biosynthesis protein compare
Atu2352 -0.6 -0.8 hypothetical protein compare
Atu0940 -0.6 -1.3 PemK protein compare
Atu2649 -0.6 -1.2 hypothetical protein compare
Atu2258 -0.6 -1.4 acetyltransferase compare
Atu2672 -0.6 -1.9 hypothetical protein compare
Atu8174 -0.6 -1.4 hypothetical protein compare
Atu0273 -0.6 -1.9 regulator protein pecM compare
Atu4006 -0.6 -2.2 AsnC family transcriptional regulator compare
Atu0601 -0.6 -2.7 oxidoreductase compare
Atu0267 -0.6 -1.5 hypothetical protein compare
Atu4389 -0.6 -1.3 nitric oxide reductase, cytochrome c-containing subunit compare
Atu4499 -0.6 -1.9 hypothetical protein compare
Atu8085 -0.6 -1.8 hypothetical protein compare
Atu2692 -0.6 -1.3 intracellular septation protein compare
Atu1251 -0.6 -2.7 O-acetylhomoserine sulfhydrylase compare
Atu3169 -0.6 -1.3 sorbitol/mannitol ABC transporter permease compare
Atu0935 -0.6 -1.9 hypothetical protein compare
Atu0482 -0.6 -1.5 polysaccharide deacetylase compare
Atu0369 -0.6 -1.4 hypothetical protein compare
Atu2238 -0.6 -1.0 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3691 -0.6 -2.2 iron (III) dicitrate ABC transporter ATPase compare


Specific Phenotypes

For 46 genes in this experiment