Experiment set16S255 for Agrobacterium fabrum C58

Compare to:

AgroPhage_F03

Group: phage
Media: LB_plus_SM_buffer + Kan (50 ug/ml)
Culturing: Agro_ML11a, 48 well microplate; Epoch2, Aerobic, at 30 (C), shaken=double orbital, continuous, 205cpm
By: James on 2/20/23
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride

Specific Phenotypes

For 1 genes in this experiment

SEED Subsystems

Subsystem #Specific
Ribonucleotide reduction 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
adenosine deoxyribonucleotides de novo biosynthesis I 2 2 1
guanosine deoxyribonucleotides de novo biosynthesis I 2 2 1
guanosine deoxyribonucleotides de novo biosynthesis II 4 3 2
adenosine deoxyribonucleotides de novo biosynthesis II 4 3 2
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) 14 12 4
superpathway of adenosine nucleotides de novo biosynthesis II 7 6 2
superpathway of guanosine nucleotides de novo biosynthesis II 8 7 2
pyrimidine deoxyribonucleotides de novo biosynthesis I 9 9 2
pyrimidine deoxyribonucleotides de novo biosynthesis III 9 8 2
superpathway of adenosine nucleotides de novo biosynthesis I 5 5 1
superpathway of guanosine nucleotides de novo biosynthesis I 6 6 1
superpathway of purine nucleotides de novo biosynthesis II 26 23 4
pyrimidine deoxyribonucleotides de novo biosynthesis IV 7 6 1
pyrimidine deoxyribonucleotides biosynthesis from CTP 8 7 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 17 2
superpathway of purine nucleotides de novo biosynthesis I 21 21 2
superpathway of histidine, purine, and pyrimidine biosynthesis 46 42 4
superpathway of purine nucleotide salvage 14 13 1