Experiment set16S197 for Agrobacterium fabrum C58

Compare to:

AgroPhage_A05

200 most important genes:

  gene name fitness t score description  
Atu8054 -3.6 -1.3 hypothetical protein compare
Atu0031 -2.6 -1.2 PTS system, IIA component compare
Atu0941 -2.5 -1.1 hypothetical protein compare
Atu3120 -2.4 -1.3 hypothetical protein compare
Atu2684 -2.4 -1.5 hypothetical protein compare
Atu5430 -2.3 -1.5 hypothetical protein compare
Atu1446 -2.3 -1.4 two component response regulator compare
Atu2125 -2.3 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1810 -2.2 -1.2 hypothetical protein compare
Atu3423 -2.2 -1.8 hypothetical protein compare
Atu8087 -2.0 -1.0 putative peptidoglycan binding protein compare
Atu1030 -1.9 -1.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3469 -1.9 -2.1 phosphoglyceromutase compare
Atu0976 -1.6 -1.6 cycL protein compare
Atu4616 -1.6 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu1687 -1.5 -4.6 anthranilate phosphoribosyltransferase compare
Atu3468 -1.4 -0.7 hypothetical protein compare
Atu8025 -1.4 -1.4 hypothetical protein compare
Atu2192 -1.3 -1.1 hypothetical protein compare
Atu0340 -1.3 -1.7 SAM dependent methyltransferase compare
Atu0638 -1.3 -1.9 hypothetical protein compare
Atu5468 -1.2 -1.9 hypothetical protein compare
Atu6036 -1.2 -1.4 entry-exclusion protein compare
Atu1688 -1.2 -2.7 indole-3-glycerol-phosphate synthase compare
Atu1021 -1.2 -1.1 outer membrane protein compare
Atu0784 -1.1 -1.7 hypothetical protein compare
Atu4677 -1.1 -1.0 hypothetical protein compare
Atu1445 -1.1 -2.2 two component sensor kinase compare
Atu4610 -1.1 -5.5 sugar nucleotide epimerase/dehydratase compare
Atu2249 -1.1 -0.8 hypothetical protein compare
Atu0071 -1.0 -3.4 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu3740 -1.0 -3.4 fructose bisphosphate aldolase compare
Atu0115 -1.0 -0.8 hypothetical protein compare
Atu1640 -1.0 -2.4 hypothetical protein compare
Atu0948 -1.0 -2.4 hypothetical protein compare
Atu2352 -1.0 -1.2 hypothetical protein compare
Atu1980 -1.0 -2.1 hypothetical protein compare
Atu2289 -1.0 -6.5 anthranilate synthase component I and II compare
Atu0303 -1.0 -2.6 hypothetical protein compare
Atu1685 -1.0 -0.7 hypothetical protein compare
Atu0943 -1.0 -1.3 hypothetical protein compare
Atu1515 -1.0 -2.0 hypothetical protein compare
Atu0070 -1.0 -3.6 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1449 -1.0 -2.7 potassium uptake protein compare
Atu0486 -1.0 -2.7 dihydroorotate dehydrogenase compare
Atu8094 -1.0 -1.5 hypothetical protein compare
Atu8023 -0.9 -1.5 hypothetical protein compare
Atu1588 -0.9 -4.5 homoserine dehydrogenase compare
Atu2146 -0.9 -2.5 hypothetical protein compare
Atu3598 -0.9 -0.6 thiol:disulfide interchange protein compare
Atu4614 -0.9 -3.7 glycosyltransferase compare
Atu2041 -0.9 -1.1 acetyltransferase compare
Atu1185 -0.9 -1.4 hypothetical protein compare
Atu1527 -0.9 -0.9 nitrogen fixation protein FixS compare
Atu1636 -0.9 -2.3 hypothetical protein compare
Atu4609 -0.9 -4.6 glycosyltransferase compare
Atu0051 -0.9 -2.6 two component sensor kinase compare
Atu3463 -0.9 -2.3 non-heme chloroperoxidase compare
Atu2433 -0.8 -0.9 hypothetical protein compare
Atu2183 -0.8 -3.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3353 -0.8 -3.4 mannose-1-phosphate guanylyltransferase compare
Atu1308 -0.8 -1.6 aspartate carbamoyl transferase catalytic subunit compare
Atu0401 -0.8 -2.1 fructokinase compare
Atu1686 -0.8 -4.6 peptidyl-prolyl cis-trans isomerse D compare
Atu2068 -0.8 -2.2 hypothetical protein compare
Atu0413 -0.8 -1.5 stress induced protein compare
Atu1028 -0.8 -1.0 hypothetical protein compare
Atu1853 -0.8 -2.1 hypothetical protein compare
Atu0538 -0.8 -1.1 hypothetical protein compare
Atu5115 -0.8 -0.7 hypothetical protein compare
Atu8088 -0.8 -1.5 hypothetical protein compare
Atu2306 -0.8 -2.6 methionine aminopeptidase compare
Atu4608 -0.8 -4.5 hypothetical protein compare
Atu4407 -0.8 -1.4 periplasmic nitrate reductase, NapD protein compare
Atu1444 -0.7 -2.6 nitrogen regulation protein compare
Atu1204 -0.7 -2.0 potassium uptake protein compare
Atu5486 -0.7 -2.3 hypothetical protein compare
Atu2432 -0.7 -1.6 hypothetical protein compare
Atu5163 -0.7 -0.9 type IV secretion protein AvhB2 compare
Atu4766 -0.7 -3.0 hypothetical protein compare
Atu4618 -0.7 -3.7 dTDP-rhamnose-3,5-epimerase compare
Atu8143 -0.7 -2.1 hypothetical protein compare
Atu5010 -0.7 -1.1 hypothetical protein compare
Atu5493 -0.7 -2.0 hypothetical protein compare
Atu1679 -0.7 -1.3 peptidyl prolyl cis-trans isomerase compare
Atu2075 -0.7 -3.2 chemotaxis protein compare
Atu3095 -0.7 -1.6 hypothetical protein compare
Atu4040 -0.7 -2.4 hypothetical protein compare
Atu1163 -0.7 -0.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0086 -0.7 -0.5 ribosome-binding factor A compare
Atu4592 -0.7 -2.4 hypothetical protein compare
Atu0997 -0.7 -2.2 hypothetical protein compare
Atu2006 -0.7 -3.4 molecular chaperone, DnaJ family compare
Atu0030 -0.7 -0.7 phosphocarrier protein HPr compare
Atu4635 -0.7 -2.1 hypothetical protein compare
Atu3427 -0.7 -1.9 hypothetical protein compare
Atu3619 -0.7 -0.9 hypothetical protein compare
Atu1226 -0.7 -2.1 exoD protein compare
Atu5161 -0.7 -3.0 hypothetical protein compare
Atu5451 -0.7 -0.9 hypothetical protein compare
Atu6131 -0.7 -2.0 TraR Antiactivator compare
Atu2406 -0.6 -1.1 hypothetical protein compare
Atu1683 -0.6 -1.0 hypothetical protein compare
Atu1694 -0.6 -1.0 hypothetical protein compare
Atu0422 -0.6 -0.6 ABC transporter, membrane spanning protein compare
Atu4317 -0.6 -0.7 TetR family transcriptional regulator compare
Atu3506 -0.6 -1.6 hypothetical protein compare
Atu0322 -0.6 -2.7 enoyl CoA hydratase compare
Atu6165 -0.6 -0.8 hypothetical protein compare
Atu1225 -0.6 -0.6 hypothetical protein compare
Atu0659 -0.6 -3.0 NTP pyrophosphohydrolase, MutT family compare
Atu0085 -0.6 -1.5 tRNA pseudouridine 55 synthase compare
Atu2235 -0.6 -1.1 hypothetical protein compare
Atu3604 -0.6 -0.9 hypoxanthine phosphoribosyltransferase compare
Atu0375 -0.6 -1.0 small heat shock protein compare
Atu4265 -0.6 -2.9 hypothetical protein compare
Atu0495 -0.6 -2.0 hypothetical protein compare
Atu8117 -0.6 -1.5 hypothetical protein compare
Atu5146 -0.6 -1.4 hypothetical protein compare
Atu4153 -0.6 -2.9 aldehyde dehydrogenase compare
Atu0361 -0.6 -1.6 transcriptional regulator compare
Atu0093 -0.6 -1.6 Recombination protein compare
Atu3287 -0.6 -1.8 thiamine biosynthesis associated protein compare
Atu4540 -0.6 -1.4 protocatechuate 3,4-dioxygenase subunit beta compare
Atu1952 -0.6 -0.8 hypothetical protein compare
Atu2073 -0.6 -1.2 membrane protein compare
Atu0640 -0.6 -0.8 hypothetical protein compare
Atu4144 -0.6 -0.5 hypothetical protein compare
Atu4469 -0.6 -2.0 iron ABC transporter permease compare
Atu3150 -0.6 -2.1 sugar ABC transporter permease compare
Atu1252 -0.6 -1.3 hypothetical protein compare
Atu4630 -0.6 -0.8 hypothetical protein compare
Atu2067 -0.6 -0.5 hypothetical protein compare
Atu3311 -0.6 -3.6 phosphomannose isomerase compare
Atu2158 -0.6 -2.3 hypothetical protein compare
Atu4613 -0.6 -3.5 glycosyltransferase compare
Atu3744 -0.6 -3.1 ABC transporter permease compare
Atu6189 -0.6 -0.5 protein secretion chaperone compare
Atu0537 -0.6 -2.2 histidinol dehydrogenase compare
Atu3496 -0.6 -2.0 hypothetical protein compare
Atu2074 -0.6 -1.2 hypothetical protein compare
Atu2239 -0.6 -0.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1549 -0.6 -1.3 hypothetical protein compare
Atu3343 -0.6 -2.9 trehalose utilization-like protein compare
Atu1068 -0.6 -1.6 hypothetical protein compare
Atu1677 -0.6 -1.2 queuine tRNA-ribosyltransferase compare
Atu2115 -0.6 -2.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0041 -0.6 -1.0 glutamine amidotransferase compare
Atu2633 -0.6 -1.1 RhtB family transporter compare
Atu0516 -0.6 -1.2 chemotaxis receiver protein compare
Atu3460 -0.6 -1.7 RhtB family transporter compare
Atu1019 -0.6 -1.1 hypothetical protein compare
Atu3191 -0.6 -2.0 outer membrane protein compare
Atu3911 -0.6 -1.3 hypothetical protein compare
Atu4095 -0.6 -1.8 hypothetical protein compare
Atu6032 -0.5 -2.8 conjugal transfer protein compare
Atu1074 -0.5 -2.3 NAD/NADP dependent oxidoreductase compare
Atu0770 -0.5 -2.1 cytochrome C oxidase assembly protein compare
Atu2028 -0.5 -1.1 transcriptional regulator, ArsR family compare
Atu0876 -0.5 -0.6 superoxide dismutase compare
Atu0039 -0.5 -0.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu0297 -0.5 -1.3 hypothetical protein compare
Atu0400 -0.5 -1.4 orotate phosphoribosyltransferase compare
Atu1048 -0.5 -1.8 ABC transporter, membrane spanning protein compare
Atu2209 -0.5 -1.5 pyrroline-5-carboxylate reductase compare
Atu3492 -0.5 -1.2 sugar kinase compare
Atu0684 -0.5 -1.6 hypothetical protein compare
Atu2325 -0.5 -2.1 hypothetical protein compare
Atu0237 -0.5 -1.7 hypothetical protein compare
Atu0141 -0.5 -0.4 cytochrome O ubiquinol oxidase subunit I compare
Atu0751 -0.5 -1.9 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu2801 -0.5 -1.3 precorrin-2 C20 methyltransferase compare
Atu1978 -0.5 -2.0 hypothetical protein compare
Atu0885 -0.5 -0.7 hypothetical protein compare
Atu0631 -0.5 -2.2 molybdenum cofactor biosynthesis protein B compare
Atu0399 -0.5 -1.2 dihydroorotase compare
Atu0166 -0.5 -1.2 hypothetical protein compare
Atu0272 -0.5 -1.2 transcriptional regulator, MarR family compare
Atu4615 -0.5 -2.1 glucose-1-phosphate thymidylyltransferase compare
Atu2640 -0.5 -1.3 hypothetical protein compare
Atu2317 -0.5 -1.0 hypothetical protein compare
Atu2322 -0.5 -1.4 hypothetical protein compare
Atu1801 -0.5 -0.7 hypothetical protein compare
Atu1311 -0.5 -1.7 acetyltransferase compare
Atu0844 -0.5 -2.3 hypothetical protein compare
Atu3264 -0.5 -1.1 IclR family transcriptional regulator compare
Atu4641 -0.5 -1.1 LysR family transcriptional regulator compare
Atu2456 -0.5 -1.5 lactoylglutathione lyase compare
Atu2231 -0.5 -1.9 acetyltransferase compare
Atu3521 -0.5 -1.4 permease compare
Atu3627 -0.5 -1.0 hypothetical protein compare
Atu0488 -0.5 -1.0 hypothetical protein compare
Atu4002 -0.5 -2.4 hypothetical protein compare
Atu2578 -0.5 -1.4 cAMP-dependent protein kinase regulatory subunit compare
Atu0938 -0.5 -1.6 transcriptional regulator, MerR family compare
Atu1565 -0.5 -1.0 serine acetyltransferase compare
Atu0647 -0.5 -1.6 phosphoribosylamine--glycine ligase compare
Atu3663 -0.5 -0.5 hypothetical protein compare
Atu3201 -0.5 -2.0 TetR family transcriptional regulator compare
Atu2380 -0.5 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in phage experiments