Experiment set16IT020 for Pseudomonas putida KT2440

Compare to:

L-Isoleucine carbon source

200 most important genes:

  gene name fitness t score description  
PP_2217 -7.0 -4.8 enoyl-CoA hydratase compare
PP_4401 -6.7 -6.5 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_4400 -6.7 -7.9 Bkd operon transcriptional regulator conserved
PP_2334 -6.6 -6.4 2-methylisocitrate lyase compare
PP_4403 -6.5 -9.0 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_1988 -6.4 -8.7 3-isopropylmalate dehydrogenase compare
PP_4723 -6.4 -14.8 Carbamoyl-phosphate synthase large chain compare
PP_1985 -6.3 -6.1 3-isopropylmalate dehydratase large subunit compare
PP_1986 -6.3 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_5347 -6.1 -12.4 pyruvate carboxylase subunit A compare
PP_4909 -6.0 -7.1 phosphoserine phosphatase compare
PP_2335 -5.9 -10.5 methylcitrate synthase compare
PP_4724 -5.8 -8.9 Carbamoyl-phosphate synthase small chain compare
PP_5346 -5.8 -11.2 pyruvate carboxylase subunit B compare
PP_4402 -5.8 -14.3 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_5348 -5.6 -12.2 Transcriptional regulator, LysR family compare
PP_4695 -5.5 -13.8 Sensory box histidine kinase compare
PP_0082 -5.3 -3.7 tryptophan synthase alpha chain compare
PP_4364 -5.3 -6.9 putative Anti-sigma F factor antagonist compare
PP_0184 -5.2 -6.2 Argininosuccinate lyase compare
PP_0967 -5.2 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2868 -5.2 -9.3 Transcriptional regulator, Cro/CI family compare
PP_1088 -5.2 -11.0 Argininosuccinate synthase compare
PP_3511 -5.1 -11.4 Branched-chain-amino-acid aminotransferase compare
PP_4680 -5.1 -16.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -5.1 -7.7 Ornithine carbamoyltransferase compare
PP_2215 -5.1 -6.9 acetyl-CoA acetyltransferase compare
PP_0290 -5.0 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -5.0 -5.9 tryptophan synthase beta chain compare
PP_1995 -5.0 -11.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4058 -4.9 -11.4 1,4-alpha-glucan branching enzyme compare
PP_4696 -4.9 -5.8 Nitrogen regulation protein NR(I) compare
PP_4678 -4.8 -17.9 Ketol-acid reductoisomerase compare
PP_2216 -4.8 -8.4 short-chain acyl-CoA dehydrogenase conserved
PP_5098 -4.7 -9.5 methionine biosynthesis protein MetW compare
PP_2371 -4.7 -9.0 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -4.7 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2214 -4.7 -6.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0356 -4.6 -10.8 malate synthase G compare
PP_1231 -4.5 -8.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0417 -4.5 -20.1 Anthranilate synthase component 1 compare
PP_5097 -4.4 -16.8 homoserine O-acetyltransferase compare
PP_5289 -4.4 -5.8 Acetylglutamate kinase compare
PP_0293 -4.4 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -4.4 -14.6 Histidinol dehydrogenase compare
PP_3999 -4.3 -8.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5185 -4.2 -8.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1025 -4.2 -14.5 2-isopropylmalate synthase compare
PP_0292 -4.2 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5128 -4.1 -7.8 Dihydroxy-acid dehydratase compare
PP_4999 -4.0 -3.9 dihydroorotase-like protein compare
PP_1233 -4.0 -8.1 sulfurtransferase compare
PP_0289 -3.9 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5104 -3.7 -9.0 thiazole synthase compare
PP_2336 -3.7 -2.5 aconitate hydratase 1 compare
PP_0735 -3.6 -3.5 molybdopterin-synthase adenylyltransferase compare
PP_0421 -3.6 -7.5 Anthranilate phosphoribosyltransferase compare
PP_0965 -3.6 -10.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5014 -3.6 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4699 -3.6 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2211 -3.6 -9.6 Transcriptional regulator, AraC family conserved
PP_1654 -3.5 -4.2 cysteine synthase B compare
PP_4799 -3.5 -4.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4700 -3.5 -2.4 pantothenate synthetase compare
PP_2001 -3.5 -9.9 O-succinylhomoserine sulfhydrylase compare
PP_4890 -3.5 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5217 -3.4 -18.0 Polyphosphate kinase compare
PP_5095 -3.3 -3.2 pyrroline-5-carboxylate reductase compare
PP_1138 -3.3 -6.0 branched chain amino acid transporter - ATP binding subunit compare
PP_4404 -3.3 -9.4 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_2433 -3.3 -5.4 conserved protein of unknown function compare
PP_0422 -3.2 -7.9 Indole-3-glycerol phosphate synthase compare
PP_5015 -3.2 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2327 -3.2 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2337 -3.2 -4.2 aconitate isomerase compare
PP_0787 -3.0 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2213 -3.0 -7.4 putative acyl-CoA synthetase conserved
PP_4782 -2.9 -6.8 Phosphomethylpyrimidine kinase compare
PP_2370 -2.9 -3.0 conserved protein of unknown function compare
PP_1139 -2.7 -14.9 branched chain amino acid transporter - permease subunit conserved
PP_0691 -2.6 -5.0 Glutamate 5-kinase compare
PP_0362 -2.6 -12.6 Biotin synthase compare
PP_0881 -2.5 -7.7 dipeptide ABC transporter - putative membrane subunit compare
PP_2168 -2.5 -11.8 Transaldolase compare
PP_1656 -2.5 -7.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_0164 -2.5 -8.5 conserved protein of unknown function compare
PP_0406 -2.5 -9.4 Nucleotidyltransferase family protein compare
PP_4482 -2.5 -5.2 Transcriptional regulator, AraC family compare
PP_1137 -2.4 -9.9 high-affinity branched-chain amino acid transporter, ATP binding conserved
PP_1141 -2.4 -10.6 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit conserved
PP_5155 -2.4 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2302 -2.4 -7.8 DNA-binding, ATP-dependent protease compare
PP_1140 -2.3 -12.8 branched chain amino acid transporter - permease subunit conserved
PP_4693 -2.2 -5.4 RNA polymerase-binding transcription factor DksA compare
PP_0914 -2.2 -11.0 GGDEF domain protein compare
PP_4922 -2.2 -12.7 Phosphomethylpyrimidine synthase compare
PP_2328 -2.2 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_0879 -2.2 -6.9 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1348 -2.1 -4.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0880 -2.1 -4.6 dipeptide ABC transporter - putative membrane subunit compare
PP_1428 -2.1 -2.8 Sigma factor AlgU negative regulatory protein compare
PP_4004 -2.1 -3.7 DNA translocase FtsK compare
PP_4863 -2.0 -12.6 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_4666 -1.9 -6.2 3-hydroxyisobutyrate dehydrogenase conserved
PP_2145 -1.9 -7.2 beta-N-acetylglucosaminidase compare
PP_4008 -1.9 -8.2 ATP-dependent serine protease compare
PP_1493 -1.9 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0878 -1.9 -8.5 dipeptide ABC transporter, binding subunit compare
PP_2414 -1.8 -1.2 conserved exported protein of unknown function compare
PP_4866 -1.8 -11.9 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_4864 -1.8 -12.0 High-affinity branched-chain amino acid transport ATP-binding protein BraF conserved
PP_1994 -1.8 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_4865 -1.8 -11.4 High-affinity branched-chain amino acid transport system permease protein BraE conserved
PP_0291 -1.8 -2.1 conserved protein of unknown function compare
PP_1764 -1.8 -8.2 Phosphoglycolate phosphatase 2 compare
PP_0393 -1.8 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1355 -1.7 -15.3 Muropeptide permease AmpG compare
PP_1328 -1.7 -3.8 Protein MraZ compare
PP_4667 -1.7 -8.9 methylmalonate-semialdehyde dehydrogenase conserved
PP_1664 -1.7 -5.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0593 -1.7 -1.8 putative ribosome-binding factor compare
PP_0513 -1.7 -3.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4867 -1.6 -9.0 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) conserved
PP_4358 -1.6 -8.7 flagellar synthesis, switching and energizing component compare
PP_4124 -1.6 -5.2 NADH-quinone oxidoreductase subunit G compare
PP_1217 -1.6 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4066 -1.6 -5.2 methylglutaconyl-CoA hydratase compare
PP_0434 -1.6 -8.4 Anhydro-N-acetylmuramic acid kinase compare
PP_0405 -1.5 -12.5 conserved protein of unknown function compare
PP_3924 -1.5 -4.8 conserved protein of unknown function compare
PP_4910 -1.5 -2.3 conserved protein of unknown function compare
PP_0261 -1.5 -4.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1734 -1.4 -2.8 Probable septum site-determining protein MinC compare
PP_0949 -1.4 -6.4 putative ATP-binding protein UPF0042 compare
PP_0420 -1.4 -4.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4368 -1.4 -6.2 flagellar motor switch protein compare
PP_4964 -1.4 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1598 -1.4 -4.3 regulatory intramembrane protein RIP zinc protease compare
PP_4129 -1.4 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4369 -1.4 -8.2 Flagellar M-ring protein compare
PP_0435 -1.3 -9.2 Peptidase, M23/M37 family compare
PP_0612 -1.3 -7.2 FAD-dependent glycine/D-amino acid oxidase compare
PP_4130 -1.3 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5236 -1.3 -7.2 conserved protein of unknown function compare
PP_5230 -1.3 -3.8 Tyrosine recombinase XerC compare
PP_4122 -1.2 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1655 -1.2 -3.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4734 -1.2 -7.3 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4120 -1.2 -3.6 NADH-quinone oxidoreductase subunit B compare
PP_3731 -1.2 -6.5 Transcriptional regulator, TetR family compare
PP_4902 -1.2 -1.6 Oligoribonuclease compare
PP_3105 -1.2 -3.0 conserved membrane protein of unknown function compare
PP_4121 -1.2 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PP_3790 -1.2 -7.5 diaminopimelate epimerase compare
PP_3603 -1.1 -6.1 Transcriptional regulator, GntR family compare
PP_4131 -1.1 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_4380 -1.1 -9.2 Flagellar hook-associated protein FlgL compare
PP_4681 -1.1 -2.9 conserved protein of unknown function compare
PP_4065 -1.1 -6.6 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_2378 -1.1 -2.1 Fe/S biogenesis protein NfuA compare
PP_4824 -1.1 -4.5 Sensor histidine kinase/response regulator compare
PP_1309 -1.1 -4.4 conserved exported protein of unknown function compare
PP_4793 -1.1 -2.8 conserved protein of unknown function compare
PP_4067 -1.0 -5.0 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5203 -1.0 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_2402 -1.0 -2.2 putative Sensor histidine kinase compare
PP_2324 -1.0 -5.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5145 -1.0 -8.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3102 -1.0 -3.2 conserved protein of unknown function compare
PP_2028 -1.0 -3.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4505 -1.0 -5.2 Sensor histidine kinase compare
PP_1632 -1.0 -2.2 conserved protein of unknown function compare
PP_5426 -1.0 -5.3 conserved protein of unknown function compare
PP_2999 -0.9 -2.3 Glyoxalase family protein compare
PP_1224 -0.9 -3.6 periplasmic subunit of the TolQRA transport system compare
PP_4370 -0.9 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_1215 -0.9 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_1716 -0.9 -2.9 Transcriptional regulator, Cro/CI family compare
PP_0789 -0.9 -5.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5456 -0.9 -2.2 conserved protein of unknown function compare
PP_4804 -0.9 -2.0 RlpA-like lipoprotein compare
PP_1941 -0.9 -4.9 conserved protein of unknown function compare
PP_4344 -0.9 -6.2 flagellar export pore protein compare
PP_0719 -0.9 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3484 -0.9 -2.6 Response regulator receiver protein compare
PP_1783 -0.9 -1.7 dTDP-glucose pyrophosphorylase compare
PP_0364 -0.9 -5.4 pimeloyl-[acp] methyl ester esterase compare
PP_5028 -0.9 -2.7 proline iminopeptidase compare
PP_0260 -0.9 -3.6 ADP-sugar pyrophosphorylase compare
PP_4396 -0.9 -3.3 conserved protein of unknown function compare
PP_1021 -0.9 -5.0 DNA-binding transcriptional regulator compare
PP_5216 -0.9 -1.6 exopolyphosphatase compare
PP_2027 -0.9 -3.9 conserved exported protein of unknown function compare
PP_3776 -0.8 -5.7 putative permease (RarD protein) compare
PP_4341 -0.8 -5.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_3510 -0.8 -3.3 conserved protein of unknown function compare
PP_5055 -0.8 -2.6 Sulfurtransferase compare
PP_1216 -0.8 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4116 -0.8 -5.8 isocitrate lyase compare
PP_2333 -0.8 -1.7 GntR family transcriptional regulator compare


Specific Phenotypes

For 25 genes in this experiment

For carbon source L-Isoleucine in Pseudomonas putida KT2440

For carbon source L-Isoleucine across organisms