Experiment set16IT019 for Pseudomonas putida KT2440

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.2 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -4.7 -6.4 phosphoserine phosphatase compare
PP_4065 -4.5 -9.7 methylcrotonyl-CoA carboxylase biotin-containing subunit beta conserved
PP_4067 -4.5 -9.6 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4403 -4.3 -8.8 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_0292 -4.2 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4400 -4.2 -7.5 Bkd operon transcriptional regulator conserved
PP_4695 -4.1 -11.3 Sensory box histidine kinase compare
PP_4678 -4.0 -14.5 Ketol-acid reductoisomerase compare
PP_1995 -4.0 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0356 -3.9 -8.8 malate synthase G compare
PP_4116 -3.9 -11.1 isocitrate lyase compare
PP_3511 -3.9 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_4402 -3.8 -11.1 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_0082 -3.8 -3.7 tryptophan synthase alpha chain compare
PP_0691 -3.7 -4.4 Glutamate 5-kinase compare
PP_5128 -3.6 -7.6 Dihydroxy-acid dehydratase compare
PP_0967 -3.6 -10.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4401 -3.5 -7.9 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_4680 -3.5 -13.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -3.4 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1215 -3.4 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0949 -3.3 -6.7 putative ATP-binding protein UPF0042 compare
PP_4723 -3.3 -14.3 Carbamoyl-phosphate synthase large chain compare
PP_4064 -3.3 -10.4 isovaleryl-CoA dehydrogenase conserved
PP_4679 -3.2 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5659 -3.1 -3.7 protein of unknown function compare
PP_0966 -3.0 -9.5 Histidinol dehydrogenase compare
PP_4066 -3.0 -4.1 methylglutaconyl-CoA hydratase compare
PP_2868 -3.0 -7.1 Transcriptional regulator, Cro/CI family compare
PP_1088 -3.0 -9.6 Argininosuccinate synthase compare
PP_0422 -2.9 -6.0 Indole-3-glycerol phosphate synthase compare
PP_5185 -2.9 -5.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5104 -2.9 -7.1 thiazole synthase compare
PP_4999 -2.9 -2.8 dihydroorotase-like protein compare
PP_2168 -2.8 -9.8 Transaldolase compare
PP_1233 -2.8 -5.7 sulfurtransferase compare
PP_0289 -2.8 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0083 -2.8 -5.4 tryptophan synthase beta chain compare
PP_4696 -2.8 -5.6 Nitrogen regulation protein NR(I) compare
PP_5145 -2.7 -20.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0735 -2.7 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_3999 -2.7 -6.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0362 -2.7 -11.1 Biotin synthase compare
PP_1231 -2.7 -5.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2302 -2.7 -5.4 DNA-binding, ATP-dependent protease compare
PP_2370 -2.7 -4.0 conserved protein of unknown function compare
PP_4122 -2.6 -3.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0290 -2.6 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2217 -2.6 -4.2 enoyl-CoA hydratase compare
PP_0417 -2.5 -13.5 Anthranilate synthase component 1 compare
PP_0421 -2.5 -6.7 Anthranilate phosphoribosyltransferase compare
PP_0184 -2.5 -5.9 Argininosuccinate lyase compare
PP_5289 -2.4 -4.4 Acetylglutamate kinase compare
PP_1598 -2.4 -5.4 regulatory intramembrane protein RIP zinc protease compare
PP_0965 -2.4 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1654 -2.4 -2.9 cysteine synthase B compare
PP_5098 -2.4 -7.2 methionine biosynthesis protein MetW compare
PP_4700 -2.4 -1.6 pantothenate synthetase compare
PP_4724 -2.4 -4.6 Carbamoyl-phosphate synthase small chain compare
PP_1317 -2.3 -5.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5155 -2.3 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1318 -2.3 -7.6 Cytochrome b compare
PP_4004 -2.2 -3.4 DNA translocase FtsK compare
PP_0593 -2.2 -1.6 putative ribosome-binding factor compare
PP_5095 -2.2 -2.1 pyrroline-5-carboxylate reductase compare
PP_1079 -2.2 -4.9 Ornithine carbamoyltransferase compare
PP_4120 -2.2 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_2433 -2.2 -3.5 conserved protein of unknown function compare
PP_4799 -2.1 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1138 -2.1 -4.0 branched chain amino acid transporter - ATP binding subunit compare
PP_0948 -2.1 -2.7 Phosphocarrier protein HPr compare
PP_1428 -2.1 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_4126 -2.1 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_4890 -2.0 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4814 -2.0 -3.3 ATP-dependent protease La domain protein compare
PP_4699 -2.0 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4124 -2.0 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_2044 -2.0 -2.0 conserved inner membrane protein of unknown function compare
PP_5097 -2.0 -10.1 homoserine O-acetyltransferase compare
PP_1319 -1.9 -6.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4121 -1.9 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4179 -1.9 -7.6 Chaperone protein HtpG compare
PP_1140 -1.9 -8.7 branched chain amino acid transporter - permease subunit conserved
PP_4131 -1.9 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_0880 -1.9 -3.6 dipeptide ABC transporter - putative membrane subunit compare
PP_2371 -1.9 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1137 -1.8 -4.6 high-affinity branched-chain amino acid transporter, ATP binding conserved
PP_4129 -1.8 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0881 -1.8 -5.1 dipeptide ABC transporter - putative membrane subunit compare
PP_4130 -1.8 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4684 -1.8 -6.5 conserved protein of unknown function with kinase-like domain compare
PP_1826 -1.7 -2.8 Hydrolase, isochorismatase family compare
PP_5706 -1.7 -2.3 Sec translocation complex - SecG subunit compare
PP_5073 -1.7 -2.8 conserved exported protein of unknown function compare
PP_4060 -1.7 -8.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2378 -1.7 -2.3 Fe/S biogenesis protein NfuA compare
PP_2001 -1.7 -7.4 O-succinylhomoserine sulfhydrylase compare
PP_4320 -1.7 -5.1 cytochrome c-type biogenesis protein compare
PP_1082 -1.6 -4.5 bacterioferritin compare
PP_5445 -1.6 -2.7 conserved protein of unknown function compare
PP_2031 -1.6 -2.4 conserved protein of unknown function compare
PP_1139 -1.6 -9.6 branched chain amino acid transporter - permease subunit conserved
PP_5055 -1.6 -3.8 Sulfurtransferase compare
PP_1141 -1.6 -6.0 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit conserved
PP_4865 -1.6 -6.5 High-affinity branched-chain amino acid transport system permease protein BraE conserved
PP_4098 -1.6 -1.9 UvrABC system protein C compare
PP_3649 -1.6 -3.1 Transcriptional regulator, GntR family compare
PP_4864 -1.6 -8.0 High-affinity branched-chain amino acid transport ATP-binding protein BraF conserved
PP_1348 -1.6 -4.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4482 -1.5 -3.3 Transcriptional regulator, AraC family compare
PP_5015 -1.5 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5338 -1.5 -2.3 aspartate ammonia-lyase compare
PP_0787 -1.5 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4964 -1.5 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4863 -1.5 -8.5 high-affinity branched-chain amino acid transporter, ATP-binding conserved
PP_1664 -1.5 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4693 -1.5 -4.5 RNA polymerase-binding transcription factor DksA compare
PP_3105 -1.4 -1.8 conserved membrane protein of unknown function compare
PP_3951 -1.4 -3.7 3-oxoadipate CoA-transferase subunit A compare
PP_3903 -1.4 -2.0 conserved protein of unknown function compare
PP_1075 -1.4 -5.8 glycerol kinase compare
PP_4782 -1.4 -4.0 Phosphomethylpyrimidine kinase compare
PP_1468 -1.4 -2.4 Tyrosine recombinase XerD compare
PP_1036 -1.3 -3.9 membrane-bound lytic murein transglycosylase F compare
PP_1328 -1.3 -1.7 Protein MraZ compare
PP_2765 -1.3 -1.4 putative Sulfonate monooxygenase MsuD compare
PP_3505 -1.3 -2.4 conserved protein of unknown function compare
PP_2999 -1.3 -2.1 Glyoxalase family protein compare
PP_4593 -1.3 -1.8 conserved protein of unknown function compare
PP_4866 -1.3 -7.1 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_3924 -1.3 -2.0 conserved protein of unknown function compare
PP_0393 -1.3 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1326 -1.2 -2.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4874 -1.2 -1.2 50S ribosomal protein L9 compare
PP_4532 -1.2 -1.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5347 -1.2 -5.8 pyruvate carboxylase subunit A compare
PP_4268 -1.2 -1.6 nucleoid-associated broad specificity regulator compare
PP_5348 -1.2 -4.8 Transcriptional regulator, LysR family compare
PP_2336 -1.2 -2.6 aconitate hydratase 1 compare
PP_4922 -1.2 -6.1 Phosphomethylpyrimidine synthase compare
PP_2313 -1.2 -2.4 conserved membrane protein of unknown function compare
PP_4666 -1.2 -3.2 3-hydroxyisobutyrate dehydrogenase compare
PP_4867 -1.1 -5.7 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) conserved
PP_2132 -1.1 -3.3 Universal stress protein compare
PP_1353 -1.1 -1.3 conserved membrane protein of unknown function compare
PP_1214 -1.1 -2.2 putative transcriptional regulatory protein compare
PP_1439 -1.1 -1.9 conserved exported protein of unknown function compare
PP_0396 -1.1 -6.6 conserved protein of unknown function compare
PP_0291 -1.1 -2.1 conserved protein of unknown function compare
PP_3328 -1.1 -1.7 putative Ring-cleaving dioxygenase compare
PP_5644 -1.1 -2.4 conserved membrane protein of unknown function compare
PP_3902 -1.1 -2.1 conserved protein of unknown function compare
PP_0397 -1.0 -7.4 protein kinase compare
PP_0108 -1.0 -3.2 conserved protein of unknown function compare
PP_3614 -1.0 -2.1 conserved membrane protein of unknown function compare
PP_0872 -1.0 -4.1 Peptide chain release factor 3 compare
PP_0513 -1.0 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2820 -1.0 -1.9 HTH-type transcriptional regulator nfxB compare
PP_4726 -1.0 -1.8 Chaperone protein DnaJ compare
PP_4984 -1.0 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3121 -1.0 -2.7 transcriptional regulator, LysR family compare
PP_2080 -1.0 -7.1 NAD-specific glutamate dehydrogenase conserved
PP_1021 -1.0 -4.2 DNA-binding transcriptional regulator compare
PP_2880 -1.0 -2.1 Transcriptional regulator, TetR family compare
PP_4722 -1.0 -2.7 Transcription elongation factor GreA compare
PP_1387 -1.0 -2.9 Probable HTH-type transcriptional regulator TtgR compare
PP_1734 -1.0 -1.5 Probable septum site-determining protein MinC compare
PP_2883 -1.0 -1.3 conserved protein of unknown function compare
PP_0001 -1.0 -1.1 probable chromosome-partitioning protein compare
PP_2337 -1.0 -1.8 aconitate isomerase compare
PP_2414 -1.0 -2.0 conserved exported protein of unknown function compare
PP_5241 -1.0 -2.1 DNA-binding response regulator, LuxR family compare
PP_0235 -0.9 -2.1 Peroxidase compare
PP_4850 -0.9 -3.9 conserved membrane protein of unknown function compare
PP_4565 -0.9 -5.8 Isocitrate dehydrogenase kinase/phosphatase compare
PP_5240 -0.9 -2.2 Response regulator compare
PP_0365 -0.9 -4.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5045 -0.9 -2.2 tRNA sulfurtransferase compare
PP_4824 -0.9 -3.4 Sensor histidine kinase/response regulator compare
PP_5640 -0.9 -2.1 conserved protein of unknown function compare
PP_2307 -0.9 -1.1 conserved protein of unknown function compare
PP_0152 -0.9 -1.7 conserved exported protein of unknown function compare
PP_4828 -0.9 -1.2 Precorrin-8X methylmutase compare
PP_5225 -0.9 -1.2 frataxin compare
PP_1683 -0.9 -1.8 Transcriptional regulator, MarR family compare
PP_5654 -0.9 -1.9 putative phosphotriesterase compare
PP_2740 -0.9 -1.4 Transcriptional regulator, MerR family compare
PP_5423 -0.9 -1.8 conserved membrane protein of unknown function compare
PP_4364 -0.9 -1.9 putative Anti-sigma F factor antagonist compare
PP_5027 -0.9 -0.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0757 -0.9 -3.3 conserved protein of unknown function compare
PP_1829 -0.8 -1.6 Hydrolase, alpha/beta fold family compare
PP_0406 -0.8 -3.2 Nucleotidyltransferase family protein compare
PP_4667 -0.8 -3.5 methylmalonate-semialdehyde dehydrogenase compare
PP_3401 -0.8 -2.8 conserved protein of unknown function compare
PP_0125 -0.8 -2.5 putative cytochrome c-type protein compare
PP_5571 -0.8 -1.2 conserved protein of unknown function compare
PP_1128 -0.8 -2.3 OmpA family protein compare
PP_1164 -0.8 -1.7 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 30 genes in this experiment

For carbon source L-Leucine in Pseudomonas putida KT2440

For carbon source L-Leucine across organisms