Experiment set16IT017 for Pseudomonas putida KT2440

Compare to:

L-Valine carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -5.8 -18.7 Ketol-acid reductoisomerase compare
PP_2335 -5.6 -11.4 methylcitrate synthase compare
PP_0083 -5.5 -5.3 tryptophan synthase beta chain compare
PP_4666 -5.2 -7.5 3-hydroxyisobutyrate dehydrogenase conserved
PP_2334 -5.1 -8.9 2-methylisocitrate lyase compare
PP_4668 -4.9 -15.5 Transcriptional regulator, LysR family conserved
PP_4909 -4.8 -10.7 phosphoserine phosphatase compare
PP_5348 -4.8 -11.2 Transcriptional regulator, LysR family compare
PP_4724 -4.8 -8.8 Carbamoyl-phosphate synthase small chain compare
PP_1985 -4.8 -8.5 3-isopropylmalate dehydratase large subunit compare
PP_4680 -4.7 -18.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4667 -4.7 -12.7 methylmalonate-semialdehyde dehydrogenase conserved
PP_5347 -4.4 -15.7 pyruvate carboxylase subunit A compare
PP_5346 -4.4 -12.2 pyruvate carboxylase subunit B compare
PP_0082 -4.4 -7.2 tryptophan synthase alpha chain compare
PP_4403 -4.4 -9.9 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_5014 -4.3 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_3491 -4.3 -12.2 Enoly-coenzyme A hydratase/isomerase family protein conserved
PP_1986 -4.2 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_2371 -4.2 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -4.0 -8.1 Nitrogen regulation protein NR(I) compare
PP_0967 -4.0 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5128 -4.0 -7.9 Dihydroxy-acid dehydratase compare
PP_1231 -4.0 -8.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0290 -4.0 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -3.9 -14.8 Carbamoyl-phosphate synthase large chain compare
PP_1088 -3.9 -13.4 Argininosuccinate synthase compare
PP_3999 -3.9 -10.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4404 -3.9 -10.4 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_0292 -3.9 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -3.8 -10.7 3-isopropylmalate dehydrogenase compare
PP_5289 -3.7 -6.3 Acetylglutamate kinase compare
PP_4400 -3.7 -7.9 Bkd operon transcriptional regulator conserved
PP_0184 -3.7 -8.7 Argininosuccinate lyase compare
PP_3511 -3.7 -10.8 Branched-chain-amino-acid aminotransferase compare
PP_4999 -3.7 -4.0 dihydroorotase-like protein compare
PP_4402 -3.6 -10.6 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_2337 -3.6 -4.2 aconitate isomerase compare
PP_4401 -3.5 -10.0 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_2336 -3.5 -4.1 aconitate hydratase 1 compare
PP_2868 -3.5 -9.4 Transcriptional regulator, Cro/CI family compare
PP_2217 -3.5 -5.8 enoyl-CoA hydratase compare
PP_4799 -3.4 -5.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5155 -3.4 -6.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1995 -3.4 -10.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -3.4 -12.3 Histidinol dehydrogenase compare
PP_0289 -3.3 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_2433 -3.3 -5.0 conserved protein of unknown function compare
PP_4058 -3.2 -13.9 1,4-alpha-glucan branching enzyme compare
PP_0787 -3.1 -7.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5185 -3.1 -8.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -3.1 -5.0 Indole-3-glycerol phosphate synthase compare
PP_0261 -3.0 -9.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4890 -2.9 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_1079 -2.9 -7.9 Ornithine carbamoyltransferase compare
PP_4700 -2.9 -3.9 pantothenate synthetase compare
PP_0965 -2.8 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4067 -2.8 -11.3 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_1233 -2.7 -6.1 sulfurtransferase compare
PP_4066 -2.7 -5.9 methylglutaconyl-CoA hydratase compare
PP_0417 -2.6 -15.9 Anthranilate synthase component 1 compare
PP_1654 -2.6 -4.6 cysteine synthase B compare
PP_5097 -2.6 -13.5 homoserine O-acetyltransferase compare
PP_5188 -2.6 -7.3 putative transcriptional regulator (AsnC/Lrp family) conserved
PP_4874 -2.5 -2.4 50S ribosomal protein L9 compare
PP_4065 -2.5 -13.0 methylcrotonyl-CoA carboxylase biotin-containing subunit beta conserved
PP_0362 -2.5 -13.3 Biotin synthase compare
PP_4695 -2.5 -9.1 Sensory box histidine kinase compare
PP_2214 -2.5 -6.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2370 -2.5 -2.3 conserved protein of unknown function compare
PP_5098 -2.4 -8.2 methionine biosynthesis protein MetW compare
PP_2327 -2.4 -7.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2001 -2.4 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_4008 -2.3 -8.9 ATP-dependent serine protease compare
PP_0339 -2.3 -7.0 Pyruvate dehydrogenase E1 component compare
PP_4782 -2.2 -6.7 Phosphomethylpyrimidine kinase compare
PP_5104 -2.2 -10.8 thiazole synthase compare
PP_4004 -2.1 -4.8 DNA translocase FtsK compare
PP_0421 -2.1 -7.4 Anthranilate phosphoribosyltransferase compare
PP_5303 -2.1 -5.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3492 -2.1 -8.4 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PP_1764 -2.0 -8.7 Phosphoglycolate phosphatase 2 compare
PP_0405 -2.0 -16.2 conserved protein of unknown function compare
PP_4064 -2.0 -12.6 isovaleryl-CoA dehydrogenase conserved
PP_1355 -2.0 -16.1 Muropeptide permease AmpG compare
PP_5015 -2.0 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4693 -1.9 -5.8 RNA polymerase-binding transcription factor DksA compare
PP_0434 -1.9 -12.9 Anhydro-N-acetylmuramic acid kinase compare
PP_5338 -1.8 -3.7 aspartate ammonia-lyase compare
PP_5328 -1.8 -5.7 putative phosphate transport system permease protein compare
PP_5149 -1.8 -10.9 threonine deaminase compare
PP_1348 -1.7 -5.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2145 -1.7 -6.7 beta-N-acetylglucosaminidase compare
PP_5295 -1.7 -3.5 conserved protein of unknown function compare
PP_2378 -1.7 -3.3 Fe/S biogenesis protein NfuA compare
PP_5350 -1.7 -4.3 Transcriptional regulator, RpiR family compare
PP_0406 -1.7 -7.2 Nucleotidyltransferase family protein compare
PP_1428 -1.7 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_2302 -1.6 -6.7 DNA-binding, ATP-dependent protease compare
PP_1664 -1.6 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4681 -1.6 -2.7 conserved protein of unknown function compare
PP_3662 -1.6 -8.5 conserved protein of unknown function compare
PP_1826 -1.5 -3.7 Hydrolase, isochorismatase family compare
PP_1025 -1.5 -11.8 2-isopropylmalate synthase compare
PP_4964 -1.5 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5095 -1.5 -2.6 pyrroline-5-carboxylate reductase compare
PP_4922 -1.5 -9.8 Phosphomethylpyrimidine synthase compare
PP_2168 -1.5 -9.8 Transaldolase compare
PP_4722 -1.5 -5.2 Transcription elongation factor GreA compare
PP_0691 -1.4 -4.0 Glutamate 5-kinase compare
PP_4364 -1.4 -4.9 putative Anti-sigma F factor antagonist compare
PP_0735 -1.4 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1656 -1.3 -6.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_3754 -1.3 -4.7 Beta-ketothiolase BktB compare
PP_2414 -1.3 -2.4 conserved exported protein of unknown function compare
PP_1366 -1.3 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_4679 -1.3 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0291 -1.2 -1.9 conserved protein of unknown function compare
PP_5035 -1.2 -6.9 Histidine utilization repressor compare
PP_5329 -1.2 -4.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4546 -1.2 -4.5 ATP-dependent helicase HrpA compare
PP_5217 -1.2 -10.3 Polyphosphate kinase compare
PP_1217 -1.2 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1994 -1.2 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_0164 -1.2 -6.8 conserved protein of unknown function compare
PP_2328 -1.1 -4.8 Phosphoadenosine phosphosulfate reductase compare
PP_1215 -1.1 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_5327 -1.1 -4.9 putative phosphate ABC transporter, permease subunit compare
PP_3756 -1.1 -5.4 TetR family transcriptional regulator compare
PP_1127 -1.0 -7.3 Carboxylesterase compare
PP_2929 -1.0 -5.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2000 -1.0 -1.6 amidophosphoribosyl transferase compare
PP_5085 -1.0 -5.5 malic enzyme B compare
PP_3649 -1.0 -3.0 Transcriptional regulator, GntR family compare
PP_0356 -1.0 -6.5 malate synthase G compare
PP_3484 -1.0 -4.3 Response regulator receiver protein compare
PP_0364 -1.0 -4.8 pimeloyl-[acp] methyl ester esterase compare
PP_5227 -1.0 -4.6 diaminopimelate decarboxylase compare
PP_4988 -1.0 -4.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5198 -1.0 -3.1 conserved protein of unknown function compare
PP_0260 -1.0 -3.4 ADP-sugar pyrophosphorylase compare
PP_1128 -0.9 -2.6 OmpA family protein compare
PP_0365 -0.9 -6.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5232 -0.9 -2.5 conserved protein of unknown function compare
PP_2215 -0.9 -3.7 acetyl-CoA acetyltransferase compare
PP_0401 -0.9 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_2313 -0.9 -2.8 conserved membrane protein of unknown function compare
PP_2326 -0.9 -3.8 Universal stress protein compare
PP_1364 -0.9 -5.8 conserved exported protein of unknown function compare
PP_4793 -0.9 -2.4 conserved protein of unknown function compare
PP_3693 -0.9 -3.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4830 -0.9 -4.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_3102 -0.8 -3.6 conserved protein of unknown function compare
PP_3731 -0.8 -6.0 Transcriptional regulator, TetR family compare
PP_1655 -0.8 -4.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0980 -0.8 -4.7 Probable cytosol aminopeptidase compare
PP_4828 -0.8 -1.3 Precorrin-8X methylmutase compare
PP_1672 -0.8 -4.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1326 -0.8 -3.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_3505 -0.8 -2.2 conserved protein of unknown function compare
PP_4505 -0.8 -4.4 Sensor histidine kinase compare
PP_0363 -0.8 -6.2 8-amino-7-oxononanoate synthase compare
PP_0841 -0.8 -3.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4199 -0.8 -1.0 putative Lipoprotein compare
PP_1702 -0.8 -2.7 Recombination-associated protein RdgC compare
PP_0914 -0.8 -5.8 GGDEF domain protein compare
PP_2031 -0.8 -2.1 conserved protein of unknown function compare
PP_2027 -0.8 -3.7 conserved exported protein of unknown function compare
PP_4754 -0.8 -4.5 Transcriptional regulator, TetR family compare
PP_5017 -0.8 -1.3 Sec-independent protein translocase protein TatB compare
PP_4247 -0.7 -1.8 Exonuclease compare
PP_5274 -0.7 -1.5 conserved protein of unknown function compare
PP_0420 -0.7 -2.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4993 -0.7 -2.6 Glutathione synthetase compare
PP_5621 -0.7 -1.6 protein of unknown function compare
PP_0087 -0.7 -2.3 conserved exported protein of unknown function compare
PP_1328 -0.7 -1.6 Protein MraZ compare
PP_4827 -0.7 -5.5 Precorrin-2 C(20)-methyltransferase compare
PP_3755 -0.7 -3.0 3-hydroxybutyryl-CoA dehydrogenase compare
PP_2169 -0.7 -3.9 tRNA-dihydrouridine synthase A compare
PP_4471 -0.7 -2.8 Magnesium transporter compare
PP_1972 -0.7 -4.5 aromatic-amino-acid aminotransferase compare
PP_3539 -0.7 -2.5 putative Transcriptional regulator compare
PP_1734 -0.7 -1.9 Probable septum site-determining protein MinC compare
PP_0366 -0.7 -3.3 dethiobiotin synthetase compare
PP_1840 -0.7 -4.4 conserved protein of unknown function compare
PP_3507 -0.7 -5.6 Aerobic cobaltochelatase subunit CobN compare
PP_1813 -0.7 -2.4 ComEA-related protein compare
PP_4641 -0.7 -5.1 putative transporter compare
PP_1677 -0.7 -3.6 Adenosyl-cobyric acid synthase compare
PP_1055 -0.7 -1.5 Type II secretion pathway protein GspN compare
PP_0789 -0.7 -3.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1609 -0.7 -2.2 conserved protein of unknown function compare
PP_5426 -0.7 -4.0 conserved protein of unknown function compare
PP_2429 -0.7 -0.9 putative Membrane protein compare
PP_2333 -0.6 -1.4 GntR family transcriptional regulator compare
PP_0400 -0.6 -3.1 CO2+/MG2+ efflux protein compare
PP_0311 -0.6 -4.2 putative dimethylglycine dehydrogenase subunit compare
PP_2018 -0.6 -3.4 adhesin-associated BNR repeat protein (from data) compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source L-Valine in Pseudomonas putida KT2440

For carbon source L-Valine across organisms