Experiment set16IT016 for Pseudomonas putida KT2440

Compare to:

L-Valine carbon source

200 most important genes:

  gene name fitness t score description  
PP_4909 -6.0 -8.3 phosphoserine phosphatase compare
PP_4666 -5.8 -8.9 3-hydroxyisobutyrate dehydrogenase conserved
PP_4667 -5.7 -12.3 methylmalonate-semialdehyde dehydrogenase conserved
PP_4678 -5.7 -18.2 Ketol-acid reductoisomerase compare
PP_1985 -5.3 -8.4 3-isopropylmalate dehydratase large subunit compare
PP_5348 -5.2 -12.0 Transcriptional regulator, LysR family compare
PP_5347 -5.0 -17.0 pyruvate carboxylase subunit A compare
PP_4668 -5.0 -15.5 Transcriptional regulator, LysR family conserved
PP_2335 -5.0 -12.1 methylcitrate synthase compare
PP_1231 -5.0 -8.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4680 -5.0 -18.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4400 -5.0 -9.8 Bkd operon transcriptional regulator conserved
PP_5346 -4.9 -12.2 pyruvate carboxylase subunit B compare
PP_5014 -4.8 -6.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0967 -4.6 -14.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4696 -4.6 -7.0 Nitrogen regulation protein NR(I) compare
PP_1988 -4.5 -12.4 3-isopropylmalate dehydrogenase compare
PP_0293 -4.5 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -4.5 -12.5 Branched-chain-amino-acid aminotransferase compare
PP_4723 -4.5 -18.3 Carbamoyl-phosphate synthase large chain compare
PP_4401 -4.5 -12.2 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_0787 -4.4 -5.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4058 -4.4 -13.9 1,4-alpha-glucan branching enzyme compare
PP_2334 -4.3 -10.2 2-methylisocitrate lyase compare
PP_0290 -4.3 -10.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.3 -8.2 tryptophan synthase beta chain compare
PP_2370 -4.3 -5.5 conserved protein of unknown function compare
PP_2217 -4.2 -5.9 enoyl-CoA hydratase compare
PP_0082 -4.2 -7.4 tryptophan synthase alpha chain compare
PP_0422 -4.1 -7.8 Indole-3-glycerol phosphate synthase compare
PP_4724 -4.1 -9.1 Carbamoyl-phosphate synthase small chain compare
PP_0289 -4.1 -9.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1986 -4.1 -5.5 3-isopropylmalate dehydratase small subunit compare
PP_1995 -4.0 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4402 -4.0 -16.0 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_3491 -4.0 -14.6 Enoly-coenzyme A hydratase/isomerase family protein conserved
PP_2868 -3.9 -9.1 Transcriptional regulator, Cro/CI family compare
PP_5128 -3.8 -9.7 Dihydroxy-acid dehydratase compare
PP_4404 -3.8 -12.4 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_5289 -3.8 -6.8 Acetylglutamate kinase compare
PP_2337 -3.8 -4.5 aconitate isomerase compare
PP_4403 -3.8 -12.3 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_1088 -3.7 -13.2 Argininosuccinate synthase compare
PP_2336 -3.7 -3.5 aconitate hydratase 1 compare
PP_0292 -3.6 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5155 -3.6 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0966 -3.5 -14.9 Histidinol dehydrogenase compare
PP_0965 -3.4 -10.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -3.4 -10.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -3.3 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_0184 -3.3 -8.9 Argininosuccinate lyase compare
PP_5185 -3.2 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5098 -3.2 -8.6 methionine biosynthesis protein MetW compare
PP_4799 -3.2 -4.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0417 -3.1 -18.1 Anthranilate synthase component 1 compare
PP_1079 -3.1 -6.6 Ornithine carbamoyltransferase compare
PP_4065 -3.1 -11.3 methylcrotonyl-CoA carboxylase biotin-containing subunit beta conserved
PP_4066 -3.1 -6.7 methylglutaconyl-CoA hydratase compare
PP_1826 -3.0 -4.6 Hydrolase, isochorismatase family compare
PP_4890 -2.9 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0421 -2.8 -8.5 Anthranilate phosphoribosyltransferase compare
PP_0362 -2.7 -15.1 Biotin synthase compare
PP_2433 -2.7 -2.8 conserved protein of unknown function compare
PP_5015 -2.7 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2327 -2.7 -8.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1233 -2.7 -4.5 sulfurtransferase compare
PP_1654 -2.7 -4.7 cysteine synthase B compare
PP_4695 -2.7 -9.7 Sensory box histidine kinase compare
PP_4067 -2.7 -10.2 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5303 -2.6 -6.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4999 -2.6 -3.3 dihydroorotase-like protein compare
PP_5188 -2.5 -6.8 putative transcriptional regulator (AsnC/Lrp family) conserved
PP_5097 -2.5 -14.5 homoserine O-acetyltransferase compare
PP_4008 -2.4 -8.7 ATP-dependent serine protease compare
PP_0434 -2.4 -13.5 Anhydro-N-acetylmuramic acid kinase compare
PP_2214 -2.3 -5.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2001 -2.3 -11.8 O-succinylhomoserine sulfhydrylase compare
PP_0735 -2.3 -3.7 molybdopterin-synthase adenylyltransferase compare
PP_4782 -2.2 -5.8 Phosphomethylpyrimidine kinase compare
PP_1355 -2.2 -19.0 Muropeptide permease AmpG compare
PP_0261 -2.2 -8.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4693 -2.2 -7.2 RNA polymerase-binding transcription factor DksA compare
PP_3492 -2.1 -6.6 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PP_0406 -2.1 -9.4 Nucleotidyltransferase family protein compare
PP_1428 -2.1 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_0405 -2.1 -16.1 conserved protein of unknown function compare
PP_0691 -2.1 -5.2 Glutamate 5-kinase compare
PP_4064 -2.0 -13.0 isovaleryl-CoA dehydrogenase conserved
PP_2378 -2.0 -3.7 Fe/S biogenesis protein NfuA compare
PP_0339 -2.0 -6.5 Pyruvate dehydrogenase E1 component compare
PP_1664 -2.0 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_5149 -1.9 -12.0 threonine deaminase compare
PP_5104 -1.9 -8.2 thiazole synthase compare
PP_1764 -1.9 -8.9 Phosphoglycolate phosphatase 2 compare
PP_4004 -1.9 -4.6 DNA translocase FtsK compare
PP_2302 -1.9 -7.1 DNA-binding, ATP-dependent protease compare
PP_4364 -1.9 -7.0 putative Anti-sigma F factor antagonist compare
PP_2145 -1.9 -7.8 beta-N-acetylglucosaminidase compare
PP_4700 -1.9 -3.8 pantothenate synthetase compare
PP_5295 -1.8 -2.7 conserved protein of unknown function compare
PP_5350 -1.7 -4.7 Transcriptional regulator, RpiR family compare
PP_5095 -1.7 -2.2 pyrroline-5-carboxylate reductase compare
PP_1348 -1.6 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4681 -1.6 -5.2 conserved protein of unknown function compare
PP_0291 -1.6 -3.1 conserved protein of unknown function compare
PP_4922 -1.6 -10.7 Phosphomethylpyrimidine synthase compare
PP_3662 -1.6 -8.5 conserved protein of unknown function compare
PP_2168 -1.5 -9.4 Transaldolase compare
PP_0164 -1.5 -7.2 conserved protein of unknown function compare
PP_3649 -1.5 -4.3 Transcriptional regulator, GntR family compare
PP_1025 -1.5 -9.4 2-isopropylmalate synthase compare
PP_2031 -1.5 -3.3 conserved protein of unknown function compare
PP_4902 -1.3 -3.4 Oligoribonuclease compare
PP_1656 -1.3 -6.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_2414 -1.3 -1.7 conserved exported protein of unknown function compare
PP_3756 -1.3 -6.2 TetR family transcriptional regulator compare
PP_5328 -1.3 -4.2 putative phosphate transport system permease protein compare
PP_5217 -1.3 -10.4 Polyphosphate kinase compare
PP_1217 -1.2 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2999 -1.2 -2.7 Glyoxalase family protein compare
PP_5090 -1.2 -2.2 putative cell division protein compare
PP_0725 -1.2 -5.0 conserved hypothetical TPR repeat protein compare
PP_5329 -1.1 -4.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1215 -1.1 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0513 -1.1 -1.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0914 -1.1 -6.4 GGDEF domain protein compare
PP_1127 -1.1 -7.3 Carboxylesterase compare
PP_2929 -1.1 -5.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5085 -1.1 -5.9 malic enzyme B compare
PP_4722 -1.0 -3.3 Transcription elongation factor GreA compare
PP_4964 -1.0 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1994 -1.0 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_0022 -1.0 -1.5 hypothetical protein compare
PP_0364 -1.0 -6.7 pimeloyl-[acp] methyl ester esterase compare
PP_3808 -1.0 -2.0 Antibiotic synthesis protein MbtH compare
PP_0841 -1.0 -4.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_2326 -0.9 -4.8 Universal stress protein compare
PP_1679 -0.9 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1364 -0.9 -6.6 conserved exported protein of unknown function compare
PP_5035 -0.9 -5.0 Histidine utilization repressor compare
PP_1766 -0.9 -4.4 methylthioribose-1-phosphate isomerase compare
PP_3539 -0.9 -2.8 putative Transcriptional regulator compare
PP_4997 -0.9 -2.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4122 -0.9 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2474 -0.9 -3.1 Glutathione S-transferase family protein compare
PP_3754 -0.9 -3.8 Beta-ketothiolase BktB compare
PP_4546 -0.9 -3.4 ATP-dependent helicase HrpA compare
PP_5327 -0.9 -4.3 putative phosphate ABC transporter, permease subunit compare
PP_0260 -0.9 -3.1 ADP-sugar pyrophosphorylase compare
PP_1678 -0.9 -3.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1677 -0.9 -4.7 Adenosyl-cobyric acid synthase compare
PP_5652 -0.9 -2.0 conserved protein of unknown function, phage origin compare
PP_3693 -0.8 -3.4 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1734 -0.8 -2.3 Probable septum site-determining protein MinC compare
PP_4098 -0.8 -1.0 UvrABC system protein C compare
PP_2032 -0.8 -3.9 putative ATPase compare
PP_4988 -0.8 -3.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0150 -0.8 -3.0 conserved exported protein of unknown function compare
PP_3484 -0.8 -3.0 Response regulator receiver protein compare
PP_0366 -0.8 -4.3 dethiobiotin synthetase compare
PP_4199 -0.8 -1.0 putative Lipoprotein compare
PP_5338 -0.8 -2.0 aspartate ammonia-lyase compare
PP_0789 -0.8 -3.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4640 -0.8 -5.1 conserved protein of unknown function compare
PP_0757 -0.8 -3.5 conserved protein of unknown function compare
PP_4828 -0.8 -1.5 Precorrin-8X methylmutase compare
PP_0356 -0.8 -4.7 malate synthase G compare
PP_1076 -0.8 -4.0 aquaglyceroporin compare
PP_4471 -0.7 -2.6 Magnesium transporter compare
PP_0363 -0.7 -5.6 8-amino-7-oxononanoate synthase compare
PP_2029 -0.7 -1.3 von Willebrand factor type A domain protein compare
PP_0627 -0.7 -2.5 conserved protein of unknown function compare
PP_1326 -0.7 -2.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0420 -0.7 -2.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5227 -0.7 -3.9 diaminopimelate decarboxylase compare
PP_4505 -0.7 -3.7 Sensor histidine kinase compare
PP_3102 -0.7 -3.2 conserved protein of unknown function compare
PP_3508 -0.7 -2.7 Protein CobW compare
PP_2348 -0.7 -3.9 Sensor histidine kinase compare
PP_1508 -0.7 -3.0 conserved protein of unknown function compare
PP_4641 -0.7 -5.3 putative transporter compare
PP_5241 -0.7 -2.5 DNA-binding response regulator, LuxR family compare
PP_1972 -0.7 -4.4 aromatic-amino-acid aminotransferase compare
PP_2000 -0.7 -1.2 amidophosphoribosyl transferase compare
PP_1655 -0.7 -3.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1224 -0.7 -4.0 periplasmic subunit of the TolQRA transport system compare
PP_0980 -0.7 -4.1 Probable cytosol aminopeptidase compare
PP_1672 -0.7 -3.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0401 -0.7 -1.7 Ribosomal RNA small subunit methyltransferase A compare
PP_4874 -0.7 -0.9 50S ribosomal protein L9 compare
PP_3731 -0.7 -4.7 Transcriptional regulator, TetR family compare
PP_3409 -0.7 -1.6 putative Cobalamin biosynthesis protein cobE compare
PP_1609 -0.7 -1.3 conserved protein of unknown function compare
PP_0066 -0.7 -3.1 Ribosomal RNA small subunit methyltransferase B compare
PP_1036 -0.7 -3.5 membrane-bound lytic murein transglycosylase F compare
PP_0057 -0.7 -5.5 major facilitator family transporter compare
PP_3105 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_5426 -0.7 -3.6 conserved protein of unknown function compare
PP_5017 -0.7 -1.2 Sec-independent protein translocase protein TatB compare
PP_0435 -0.7 -3.2 Peptidase, M23/M37 family compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source L-Valine in Pseudomonas putida KT2440

For carbon source L-Valine across organisms