Experiment set16IT013 for Pseudomonas putida KT2440

Compare to:

1-Pentanol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_3539 +2.4 10.7 putative Transcriptional regulator compare
PP_0168 +2.0 19.4 putative surface adhesion protein compare
PP_0167 +2.0 18.7 Toxin secretion ATP-binding protein compare
PP_0166 +1.9 17.6 HlyD family secretion protein compare
PP_3551 +1.9 4.2 DNA-binding response regulator, LuxR family compare
PP_1968 +1.9 15.1 TetR family transcriptional regulator compare
PP_4519 +1.9 17.1 Agglutination protein compare
PP_0165 +1.9 17.3 GGDEF domain protein compare
PP_4373 +1.8 16.6 Transcriptional regulator FleQ compare
PP_1650 +1.4 13.7 Sensor protein GacS compare
PP_4099 +1.3 12.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3761 +1.3 11.7 Sensor histidine kinase/response regulator compare
PP_2889 +1.3 5.7 putative Transmembrane regulator PrtR compare
PP_5429 +1.3 5.5 protein of unknown function compare
PP_1623 +1.2 10.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_4959 +1.2 8.4 diguanylate cyclase compare
PP_3552 +1.1 5.6 Sensory box histidine kinase compare
PP_5706 +1.1 3.7 Sec translocation complex - SecG subunit compare
PP_5053 +1.1 5.6 Protein-export protein SecB compare
PP_5232 +1.0 4.5 conserved protein of unknown function compare
PP_4171 +1.0 7.6 conserved exported protein of unknown function compare
PP_2144 +0.9 4.9 Transcriptional regulator, TetR family compare
PP_4824 +0.9 5.9 Sensor histidine kinase/response regulator compare
PP_4363 +0.9 7.0 Sensor histidine kinase/response regulator compare
PP_0401 +0.8 3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_2210 +0.8 3.5 LysR family transcriptional regulator compare
PP_0355 +0.8 2.8 Response regulator compare
PP_0574 +0.7 6.5 DNA-binding response regulator, LuxR family compare
PP_5705 +0.7 2.4 protein of unknown function compare
PP_5311 +0.7 5.1 putative signal transduction protein compare
PP_4670 +0.7 5.8 diguanylate cyclase compare
PP_0566 +0.7 1.6 translation-related factor compare
PP_1568 +0.7 1.6 conserved protein of unknown function compare
PP_1122 +0.7 1.8 OmpA family protein compare
PP_5505 +0.6 2.3 conserved transmembrane protein of unknown function compare
PP_5000 +0.6 1.6 peptidase component of the ATP-dependent HslVU protease compare
PP_4710 +0.6 4.9 tRNA pseudouridine 55 synthase compare
PP_3637 +0.6 1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2437 +0.6 4.8 putative Acyl-CoA dehydrogenase compare
PP_1575 +0.6 1.2 conserved protein of unknown function compare
PP_0177 +0.6 3.3 conserved protein of unknown function compare
PP_4669 +0.6 1.9 OmpA family protein compare
PP_4199 +0.6 1.2 putative Lipoprotein compare
PP_4204 +0.6 2.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0048 +0.6 1.4 conserved protein of unknown function compare
PP_0806 +0.6 5.6 putative Surface adhesion protein compare
PP_0306 +0.6 2.5 conserved protein of unknown function compare
PP_4828 +0.6 1.5 Precorrin-8X methylmutase compare
PP_4342 +0.6 2.5 flagellar synthesis regulator, putative ATPase compare
PP_0232 +0.6 1.4 ATP-binding taurine transporter subunit compare
PP_4762 +0.6 3.4 Acyl-CoA thioesterase II compare
PP_4629 +0.5 2.9 Sensory box protein compare
PP_0803 +0.5 4.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_0674 +0.5 4.4 ADP/ATP ratio sensor and inhibitor of translation compare
PP_2878 +0.5 2.1 conserved protein of unknown function compare
PP_0137 +0.5 4.3 glutamate/aspartate-proton DAACS transporter compare
PP_0805 +0.5 4.3 Outer membrane efflux protein compare
PP_1066 +0.5 3.1 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0719 +0.5 1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5486 +0.5 1.2 conserved protein of unknown function compare
PP_t10 +0.5 1.5 tRNA-Pro compare
PP_2387 +0.5 2.0 conserved protein of unknown function compare
PP_1646 +0.5 2.6 putative Thioredoxin compare
PP_4064 +0.5 4.1 isovaleryl-CoA dehydrogenase compare
PP_2204 +0.5 2.1 copper resistance protein B compare
PP_2214 +0.5 2.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2121 +0.5 2.0 putative Lipoprotein compare
PP_0176 +0.5 3.8 putative efflux transporter compare
PP_5255 +0.5 3.0 putative hydrolase compare
PP_0195 +0.5 2.1 conserved protein of unknown function compare
PP_4426 +0.5 1.8 Amino acid ABC transporter, permease protein compare
PP_4214 +0.5 1.9 pyoverdine biosynthesis related protein compare
PP_3908 +0.5 2.2 conserved protein of unknown function compare
PP_0274 +0.4 0.9 putative transcriptional regulator containing HTH domain compare
PP_4054 +0.4 1.5 conserved protein of unknown function compare
PP_4109 +0.4 1.8 conserved protein of unknown function compare
PP_0547 +0.4 2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3140 +0.4 3.2 Glycosyl transferase, group 2 family protein compare
PP_0516 +0.4 2.0 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_4213 +0.4 1.3 putative dipeptidase compare
PP_2456 +0.4 2.8 D-ribose ABC transporter - permease subunit compare
PP_1385 +0.4 4.0 Probable efflux pump membrane transporter TtgB compare
PP_0385 +0.4 2.7 putative serine acetyltransferase compare
PP_3314 +0.4 1.7 Heat shock protein, HSP20 family compare
PP_1005 +0.4 2.5 Heme oxygenase compare
PP_4941 +0.4 2.9 conserved exported protein of unknown function compare
PP_3235 +0.4 2.5 conserved protein of unknown function compare
PP_0775 +0.4 1.0 conserved protein of unknown function compare
PP_2499 +0.4 0.9 conserved protein of unknown function compare
PP_3020 +0.4 1.8 putative Serine/threonine protein phosphatase compare
PP_0191 +0.4 1.9 Transcriptional regulatory protein AlgQ compare
PP_4808 +0.4 1.5 23S rRNA m3psi1915 methyltransferase compare
PP_3773 +0.4 2.0 conserved protein of unknown function compare
PP_4789 +0.4 1.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3831 +0.4 2.6 conserved protein of unknown function compare
PP_1386 +0.4 3.3 Probable efflux pump periplasmic linker TtgA compare
PP_4340 +0.4 1.6 response regulator for chemotactic signal transduction compare
PP_3378 +0.4 1.3 putative 2-ketogluconokinase compare
PP_2192 +0.4 2.2 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_1268 +0.4 1.6 putative HtrA suppressor protein sohA compare
PP_0319 +0.4 0.8 conserved protein of unknown function compare
PP_3509 +0.4 2.1 Glyoxalase family protein compare
PP_3126 +0.4 3.2 putative polysaccharide exported protein compare
PP_4449 +0.4 1.2 conserved protein of unknown function compare
PP_2740 +0.4 1.5 Transcriptional regulator, MerR family compare
PP_4769 +0.4 1.8 conserved protein of unknown function compare
PP_2698 +0.4 2.4 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase compare
PP_4379 +0.4 2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1453 +0.4 3.2 putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity compare
PP_5483 +0.4 1.3 conserved protein of unknown function compare
PP_4184 +0.4 3.1 branched chain amino acid transporter compare
PP_1536 +0.4 1.8 conserved protein of unknown function compare
PP_2649 +0.4 2.1 Transcriptional regulator, LysR family compare
PP_0765 +0.4 3.6 putative adhesin (DUF1302) (from data) compare
PP_3335 +0.4 2.2 conserved protein of unknown function compare
PP_5084 +0.4 3.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4390 +0.4 2.6 flagellar basal-body rod protein FlgC compare
PP_3243 +0.4 1.1 Acetyltransferase, GNAT family compare
PP_4196 +0.4 1.1 conserved exported protein of unknown function compare
PP_0743 +0.4 3.0 conserved protein with NAD(P)-binding Rossmann-fold domain compare
PP_3732 +0.4 2.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_2858 +0.4 1.8 conserved exported protein of unknown function compare
PP_3729 +0.4 2.2 Periplasmic amino acid-binding protein-related protein compare
PP_3285 +0.4 1.9 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_5561 +0.4 2.1 conserved protein of unknown function compare
PP_0509 +0.4 2.0 conserved protein of unknown function compare
PP_5175 +0.4 2.5 HlyD family secretion protein compare
PP_3835 +0.4 2.4 Sensory box histidine kinase compare
PP_1352 +0.4 1.5 UPF0234 protein PP_1352 compare
PP_5533 +0.4 0.9 conserved protein of unknown function compare
PP_1845 +0.4 1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_4391 +0.4 2.8 flagellar basal-body rod protein FlgB compare
PP_1635 +0.4 1.3 DNA-binding response regulator compare
PP_5329 +0.4 2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2813 +0.4 1.8 BNR domain protein compare
PP_1404 +0.4 1.6 conserved protein of unknown function compare
PP_4385 +0.4 2.1 flagellar basal-body rod protein FlgG compare
PP_4253 +0.4 1.2 cytochrome c oxidase subunit, cbb3-type compare
PP_5557 +0.4 1.5 protein of unknown function compare
PP_1366 +0.4 0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_0313 +0.4 1.8 putative electron transfer flavoprotein beta subunit compare
PP_1917 +0.4 2.4 4-amino-4-deoxychorismate lyase compare
PP_1554 +0.4 1.2 conserved protein of unknown function compare
PP_1864 +0.4 1.6 conserved protein of unknown function compare
PP_0585 +0.4 1.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2711 +0.4 2.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0412 +0.4 2.1 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_1067 +0.4 3.0 Sensor histidine kinase compare
PP_1544 +0.4 1.8 conserved protein of unknown function compare
PP_4328 +0.4 1.9 conserved protein of unknown function compare
PP_5331 +0.4 2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_0178 +0.4 2.6 putative efflux pump compare
PP_2222 +0.4 1.5 conserved protein of unknown function compare
PP_5514 +0.4 2.0 conserved protein of unknown function compare
PP_5648 +0.4 1.4 conserved exported protein of unknown function compare
PP_2510 +0.4 1.1 conserved protein of unknown function compare
PP_1309 +0.4 2.5 conserved exported protein of unknown function compare
PP_3138 +0.4 2.1 VirK domain protein compare
PP_0766 +0.3 3.1 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_1190 +0.3 1.6 conserved protein of unknown function compare
PP_0945 +0.3 1.2 conserved protein of unknown function compare
PP_0804 +0.3 2.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3052 +0.3 0.7 conserved protein of unknown function compare
PP_3135 +0.3 2.6 putative Glycosyl transferase compare
PP_0369 +0.3 2.8 putative diguanylate cyclase compare
PP_2247 +0.3 1.7 putative Endoribonuclease compare
PP_0220 +0.3 1.1 methionine import ATP-binding protein metN2 compare
PP_0185 +0.3 2.8 Positive alginate biosynthesis regulatory protein compare
PP_2220 +0.3 1.4 C4-type zinc finger protein, DksA/TraR family compare
PP_4180 +0.3 1.7 conserved protein of unknown function compare
PP_5556 +0.3 1.8 putative bacteriophage lysis protein compare
PP_1550 +0.3 1.3 Transcriptional regulator, Cro/CI family compare
PP_1871 +0.3 2.0 Protease HtpX compare
PP_2002 +0.3 1.3 putative enzyme compare
PP_0085 +0.3 2.3 conserved protein of unknown function compare
PP_4029 +0.3 2.3 NADH pyrophosphatase compare
PP_2724 +0.3 1.6 conserved protein of unknown function compare
PP_3127 +0.3 2.4 putative Exopolysaccharide transport protein compare
PP_4625 +0.3 1.5 anti-holin regulator of holin CidA compare
PP_4227 +0.3 0.7 conserved protein of unknown function compare
PP_3307 +0.3 0.9 conserved protein of unknown function compare
PP_3967 +0.3 1.8 MutT/nudix family protein compare
PP_0639 +0.3 2.2 conserved protein of unknown function compare
PP_0425 +0.3 1.2 conserved protein of unknown function compare
PP_2016 +0.3 1.2 conserved protein of unknown function compare
PP_1559 +0.3 1.2 Holin compare
PP_0963 +0.3 0.9 putative BolA family protein compare
PP_5519 +0.3 1.5 conserved protein of unknown function of phage origin compare
PP_2062 +0.3 2.0 conserved protein of unknown function compare
PP_4387 +0.3 0.8 conserved exported protein of unknown function compare
PP_4966 +0.3 0.9 transcriptional regulator of methionine metabolism compare
PP_4871 +0.3 1.8 putative lysine decarboxylase family protein compare
PP_4394 +0.3 1.7 flagella basal body P-ring formation protein compare
PP_0757 +0.3 1.5 conserved protein of unknown function compare
PP_0992 +0.3 1.7 conserved protein of unknown function, UPF0276 family compare
PP_0123 +0.3 2.2 DNA polymerase I, 5 compare
PP_5001 +0.3 1.4 protease HslVU, ATPase component compare
PP_0179 +0.3 2.4 putative efflux transporter compare
PP_1480 +0.3 1.4 conserved protein of unknown function compare
PP_5051 +0.3 1.4 conserved protein of unknown function compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source 1-Pentanol in Pseudomonas putida KT2440

For carbon source 1-Pentanol across organisms