Experiment set16IT012 for Pseudomonas putida KT2440

Compare to:

1-Pentanol carbon source

200 most important genes:

  gene name fitness t score description  
PP_4364 -6.8 -6.6 putative Anti-sigma F factor antagonist compare
PP_0293 -6.4 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -5.5 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5185 -5.4 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -5.2 -3.6 tryptophan synthase alpha chain compare
PP_1995 -5.2 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0164 -5.1 -8.5 conserved protein of unknown function compare
PP_2335 -5.0 -11.5 methylcitrate synthase compare
PP_0083 -4.9 -5.9 tryptophan synthase beta chain compare
PP_0290 -4.9 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_4723 -4.8 -18.6 Carbamoyl-phosphate synthase large chain compare
PP_0966 -4.6 -12.2 Histidinol dehydrogenase compare
PP_0417 -4.5 -21.6 Anthranilate synthase component 1 compare
PP_3511 -4.5 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_3821 -4.4 -12.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5289 -4.3 -6.5 Acetylglutamate kinase compare
PP_4679 -4.1 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -4.1 -9.2 3-isopropylmalate dehydrogenase compare
PP_4799 -4.1 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2334 -4.1 -8.6 2-methylisocitrate lyase compare
PP_4680 -4.1 -15.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.0 -17.1 Ketol-acid reductoisomerase compare
PP_5014 -4.0 -5.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_2371 -3.9 -9.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -3.9 -7.5 Nitrogen regulation protein NR(I) compare
PP_1088 -3.9 -13.5 Argininosuccinate synthase compare
PP_0422 -3.9 -6.6 Indole-3-glycerol phosphate synthase compare
PP_5097 -3.8 -14.4 homoserine O-acetyltransferase compare
PP_5128 -3.8 -7.5 Dihydroxy-acid dehydratase compare
PP_1079 -3.8 -6.8 Ornithine carbamoyltransferase compare
PP_0292 -3.7 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -3.7 -10.1 phosphoserine phosphatase compare
PP_0184 -3.6 -8.7 Argininosuccinate lyase compare
PP_4940 -3.6 -9.8 Putative glycosyltransferase compare
PP_0691 -3.6 -5.8 Glutamate 5-kinase compare
PP_2370 -3.5 -4.0 conserved protein of unknown function compare
PP_5098 -3.5 -8.9 methionine biosynthesis protein MetW compare
PP_4700 -3.5 -2.4 pantothenate synthetase compare
PP_4890 -3.5 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -3.5 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_0289 -3.4 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4724 -3.4 -9.9 Carbamoyl-phosphate synthase small chain compare
PP_0339 -3.3 -6.0 Pyruvate dehydrogenase E1 component compare
PP_0421 -3.3 -8.0 Anthranilate phosphoribosyltransferase compare
PP_1986 -3.3 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_0965 -3.3 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0376 -3.2 -12.1 Coenzyme PQQ synthesis protein E compare
PP_2336 -3.2 -4.3 aconitate hydratase 1 compare
PP_2675 -3.2 -6.1 Cytochrome c-type protein compare
PP_2682 -3.1 -5.7 Fe-containing alcohol dehydrogenase compare
PP_2001 -3.1 -12.9 O-succinylhomoserine sulfhydrylase compare
PP_4699 -3.1 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0914 -2.9 -11.5 GGDEF domain protein compare
PP_3999 -2.9 -10.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2337 -2.8 -4.2 aconitate isomerase compare
PP_4004 -2.8 -5.3 DNA translocase FtsK compare
PP_1654 -2.8 -4.2 cysteine synthase B compare
PP_0127 -2.8 -6.2 Thiol:disulfide interchange protein compare
PP_0378 -2.8 -9.2 Pyrroloquinoline-quinone synthase compare
PP_2327 -2.8 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0420 -2.8 -11.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5015 -2.8 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1025 -2.8 -11.0 2-isopropylmalate synthase compare
PP_1898 -2.7 -4.1 MotA/TolQ/ExbB proton channel family protein compare
PP_2665 -2.6 -4.7 Glycerol metabolism activator compare
PP_1826 -2.6 -4.5 Hydrolase, isochorismatase family compare
PP_5347 -2.5 -12.4 pyruvate carboxylase subunit A compare
PP_2414 -2.5 -1.7 conserved exported protein of unknown function compare
PP_0377 -2.5 -3.3 coenzyme PQQ synthesis protein D compare
PP_4994 -2.5 -5.9 conserved protein of unknown function compare
PP_2683 -2.4 -5.4 putative sensory box histidine kinase/response regulator compare
PP_5346 -2.4 -9.3 pyruvate carboxylase subunit B compare
PP_0291 -2.4 -2.8 conserved protein of unknown function compare
PP_4693 -2.3 -6.0 RNA polymerase-binding transcription factor DksA compare
PP_0379 -2.3 -7.7 Coenzyme PQQ synthesis protein B compare
PP_5155 -2.2 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0381 -2.1 -6.4 Coenzyme PQQ synthesis protein F compare
PP_1328 -2.0 -3.9 Protein MraZ compare
PP_2679 -1.9 -12.3 quinoprotein ethanol dehydrogenase compare
PP_1493 -1.9 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1111 -1.9 -7.1 putative Synthetase compare
PP_1231 -1.9 -6.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3458 -1.9 -7.8 Butyrate--CoA ligase compare
PP_1110 -1.9 -4.2 serine acetyltransferase compare
PP_2328 -1.9 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_1109 -1.9 -11.5 Transcriptional regulator, GntR family compare
PP_0856 -1.9 -4.4 conserved lipoprotein of unknown function compare
PP_1656 -1.9 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4058 -1.8 -8.7 1,4-alpha-glucan branching enzyme compare
PP_1994 -1.8 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_2669 -1.8 -7.9 putative Outer membrane protein compare
PP_5348 -1.8 -8.9 Transcriptional regulator, LysR family compare
PP_5748 -1.8 -3.0 cytochrome c heme lyase subunit compare
PP_4943 -1.8 -2.0 putative Glycosyl transferase compare
PP_1217 -1.7 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3467 -1.7 -7.2 Sigma-54 dependent transcriptional regulator compare
PP_5095 -1.7 -2.7 pyrroline-5-carboxylate reductase compare
PP_4964 -1.7 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0435 -1.7 -11.9 Peptidase, M23/M37 family compare
PP_0356 -1.7 -8.8 malate synthase G compare
PP_3484 -1.6 -3.7 Response regulator receiver protein compare
PP_1215 -1.6 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_5538 -1.6 -8.0 putative ABC transporter, substrate-binding protein compare
PP_1734 -1.6 -3.0 Probable septum site-determining protein MinC compare
PP_4804 -1.6 -2.6 RlpA-like lipoprotein compare
PP_2433 -1.5 -3.2 conserved protein of unknown function compare
PP_2667 -1.5 -8.4 ABC transporter compare
PP_2168 -1.5 -9.1 Transaldolase compare
PP_0763 -1.5 -9.6 Medium-chain-fatty-acid CoA ligase compare
PP_3461 -1.5 -7.3 quinohemoprotein amine dehydrogenase modification protein compare
PP_2820 -1.5 -3.4 HTH-type transcriptional regulator nfxB compare
PP_2322 -1.4 -7.7 Major outer membrane lipoprotein compare
PP_5035 -1.4 -6.4 Histidine utilization repressor compare
PP_0834 -1.4 -2.7 Sec translocation complex subunit YajC compare
PP_3459 -1.4 -10.3 quinohemoprotein amine dehydrogenase, beta subunit compare
PP_5217 -1.4 -10.9 Polyphosphate kinase compare
PP_1598 -1.4 -4.9 regulatory intramembrane protein RIP zinc protease compare
PP_4895 -1.3 -3.3 tRNA dimethylallyltransferase compare
PP_0370 -1.3 -10.2 Acyl-CoA dehydrogenase family protein compare
PP_5546 -1.3 -2.6 conserved protein of unknown function compare
PP_3102 -1.3 -4.8 conserved protein of unknown function compare
PP_1719 -1.3 -7.9 Tail-specific protease prc compare
PP_4695 -1.3 -6.3 Sensory box histidine kinase compare
PP_5313 -1.3 -3.0 DNA-binding protein HU-alpha compare
PP_2302 -1.3 -5.4 DNA-binding, ATP-dependent protease compare
PP_2324 -1.3 -7.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2136 -1.3 -4.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1664 -1.2 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_4136 -1.2 -2.2 Transcriptional regulator, LuxR family compare
PP_5227 -1.2 -5.2 diaminopimelate decarboxylase compare
PP_1804 -1.2 -8.4 Glycosyl transferase WbpL compare
PP_3603 -1.2 -5.8 Transcriptional regulator, GntR family compare
PP_3460 -1.2 -2.6 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2903 -1.2 -3.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0787 -1.2 -4.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5602 -1.1 -8.1 quinohaemoprotein amine dehydrogenase, alpha subunit compare
PP_0406 -1.1 -5.1 Nucleotidyltransferase family protein compare
PP_4122 -1.1 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4129 -1.1 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0767 -1.1 -7.5 Transcriptional regulator, LuxR family compare
PP_4126 -1.1 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_2868 -1.1 -5.5 Transcriptional regulator, Cro/CI family compare
PP_1764 -1.1 -5.8 Phosphoglycolate phosphatase 2 compare
PP_0002 -1.1 -5.3 probable chromosome partition protein compare
PP_2672 -1.1 -3.7 Transcriptional activator protein ExaE compare
PP_3286 -1.1 -4.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4116 -1.1 -7.8 isocitrate lyase compare
PP_2676 -1.1 -5.5 putative Periplasmic binding protein compare
PP_4320 -1.0 -3.0 cytochrome c-type biogenesis protein compare
PP_0434 -1.0 -7.8 Anhydro-N-acetylmuramic acid kinase compare
PP_1801 -1.0 -7.9 Glycosyl transferase WbpY compare
PP_2320 -1.0 -8.0 conserved exported protein of unknown function compare
PP_1800 -1.0 -6.3 Oxidoreductase Rmd compare
PP_1355 -1.0 -8.7 Muropeptide permease AmpG compare
PP_0362 -1.0 -7.5 Biotin synthase compare
PP_2668 -1.0 -2.1 ABC efflux transporter, ATP-binding protein compare
PP_5203 -1.0 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_5230 -1.0 -3.2 Tyrosine recombinase XerC compare
PP_1224 -1.0 -4.4 periplasmic subunit of the TolQRA transport system compare
PP_1778 -1.0 -4.4 Lipopolysaccharide ABC export system, permease protein compare
PP_4504 -1.0 -2.1 conserved exported protein of unknown function compare
PP_4938 -1.0 -5.0 putative Glycosyl transferase compare
PP_4828 -1.0 -1.6 Precorrin-8X methylmutase compare
PP_1055 -1.0 -1.4 Type II secretion pathway protein GspN compare
PP_2333 -1.0 -2.0 GntR family transcriptional regulator compare
PP_3880 -0.9 -1.9 conserved exported protein of unknown function compare
PP_0405 -0.9 -8.0 conserved protein of unknown function compare
PP_4124 -0.9 -3.5 NADH-quinone oxidoreductase subunit G compare
PP_2217 -0.9 -3.0 enoyl-CoA hydratase compare
PP_1430 -0.9 -5.9 putative periplasmic serine endoprotease DegP-like compare
PP_3035 -0.9 -2.3 conserved protein of unknown function compare
PP_4984 -0.9 -6.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2326 -0.9 -5.1 Universal stress protein compare
PP_4870 -0.9 -2.8 Azurin compare
PP_1941 -0.9 -4.0 conserved protein of unknown function compare
PP_4121 -0.9 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1731 -0.9 -2.5 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1802 -0.9 -7.4 glycosyl transferase compare
PP_2390 -0.9 -4.8 Transcriptional regulator, LysR family compare
PP_0735 -0.9 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4515 -0.9 -4.3 Transcriptional regulator, MarR family compare
PP_0364 -0.8 -5.2 pimeloyl-[acp] methyl ester esterase compare
PP_0380 -0.8 -2.6 Coenzyme PQQ synthesis protein A compare
PP_2345 -0.8 -2.6 conserved exported protein of unknown function compare
PP_4726 -0.8 -1.7 Chaperone protein DnaJ compare
PP_4701 -0.8 -1.3 glucose-6-phosphate isomerase compare
PP_4010 -0.8 -2.5 DNA replication inhibitor compare
PP_2145 -0.8 -4.7 beta-N-acetylglucosaminidase compare
PP_0363 -0.8 -6.2 8-amino-7-oxononanoate synthase compare
PP_5114 -0.8 -1.3 putative adenine methyltransferase compare
PP_5110 -0.8 -1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5575 -0.8 -2.2 conserved protein of unknown function compare
PP_2681 -0.8 -1.7 coenzyme PQQ synthesis protein D compare
PP_4009 -0.8 -2.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_1799 -0.8 -5.9 GDP-mannose 4,6-dehydratase compare
PP_5303 -0.8 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1233 -0.8 -3.7 sulfurtransferase compare
PP_4917 -0.8 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1824 -0.8 -1.6 Smr domain protein compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source 1-Pentanol in Pseudomonas putida KT2440

For carbon source 1-Pentanol across organisms