Experiment set16IT012 for Pseudomonas putida KT2440

Compare to:

1-Pentanol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0168 +2.2 20.9 putative surface adhesion protein compare
PP_3539 +2.1 10.4 putative Transcriptional regulator compare
PP_0167 +2.0 19.4 Toxin secretion ATP-binding protein compare
PP_0166 +2.0 18.8 HlyD family secretion protein compare
PP_0165 +2.0 18.5 GGDEF domain protein compare
PP_4519 +2.0 17.8 Agglutination protein compare
PP_4373 +1.9 17.6 Transcriptional regulator FleQ compare
PP_1968 +1.9 13.7 TetR family transcriptional regulator compare
PP_5232 +1.6 3.9 conserved protein of unknown function compare
PP_2889 +1.6 7.0 putative Transmembrane regulator PrtR compare
PP_1650 +1.5 13.7 Sensor protein GacS compare
PP_1623 +1.5 12.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_3551 +1.5 4.7 DNA-binding response regulator, LuxR family compare
PP_3761 +1.5 12.8 Sensor histidine kinase/response regulator compare
PP_4099 +1.4 12.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5053 +1.4 7.0 Protein-export protein SecB compare
PP_4959 +1.3 9.0 diguanylate cyclase compare
PP_5429 +1.3 5.3 protein of unknown function compare
PP_5706 +1.1 2.7 Sec translocation complex - SecG subunit compare
PP_4363 +1.1 8.3 Sensor histidine kinase/response regulator compare
PP_4171 +1.1 7.4 conserved exported protein of unknown function compare
PP_3552 +1.1 4.8 Sensory box histidine kinase compare
PP_2144 +1.0 4.4 Transcriptional regulator, TetR family compare
PP_4824 +0.9 5.9 Sensor histidine kinase/response regulator compare
PP_4762 +0.8 5.9 Acyl-CoA thioesterase II compare
PP_0574 +0.8 6.9 DNA-binding response regulator, LuxR family compare
PP_2568 +0.8 2.1 Ring-cleaving dioxygenase compare
PP_2210 +0.8 2.9 LysR family transcriptional regulator compare
PP_5311 +0.7 5.5 putative signal transduction protein compare
PP_4629 +0.7 3.9 Sensory box protein compare
PP_4204 +0.7 4.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4710 +0.7 5.8 tRNA pseudouridine 55 synthase compare
PP_5093 +0.7 1.7 twitching motility protein compare
PP_2387 +0.7 2.7 conserved protein of unknown function compare
PP_0177 +0.7 3.9 conserved protein of unknown function compare
PP_0185 +0.7 5.2 Positive alginate biosynthesis regulatory protein compare
PP_3762 +0.7 1.8 Response regulator compare
PP_1214 +0.7 1.7 putative transcriptional regulatory protein compare
PP_0355 +0.7 2.3 Response regulator compare
PP_1268 +0.7 3.1 putative HtrA suppressor protein sohA compare
PP_3052 +0.7 1.4 conserved protein of unknown function compare
PP_4874 +0.7 1.0 50S ribosomal protein L9 compare
PP_3926 +0.6 1.4 short-chain dehydrogenase compare
PP_5705 +0.6 2.4 protein of unknown function compare
PP_4561 +0.6 1.1 stress response protein compare
PP_1713 +0.6 2.2 Transcriptional regulator PcaQ compare
PP_2499 +0.6 1.3 conserved protein of unknown function compare
PP_1269 +0.6 1.3 Universal stress protein family compare
PP_t29 +0.6 1.7 tRNA-Ala compare
PP_0412 +0.6 3.3 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_3580 +0.6 2.2 conserved protein of unknown function compare
PP_3810 +0.6 2.3 conserved protein of unknown function compare
PP_3447 +0.6 1.3 conserved membrane protein of unknown function compare
PP_4094 +0.6 2.3 conserved protein of unknown function compare
PP_4792 +0.6 1.6 conserved exported protein of unknown function compare
PP_2857 +0.6 2.0 conserved exported protein of unknown function compare
PP_4213 +0.6 2.2 putative dipeptidase compare
PP_0805 +0.6 4.5 Outer membrane efflux protein compare
PP_0839 +0.6 2.0 tRNA Cm32/Um32 methyltransferase compare
PP_0806 +0.6 5.4 putative Surface adhesion protein compare
PP_0803 +0.6 3.9 Protein secretion ABC efflux system, membrane fusion protein compare
PP_3930 +0.6 1.9 conserved exported protein of unknown function compare
PP_0674 +0.5 4.6 ADP/ATP ratio sensor and inhibitor of translation compare
PP_3142 +0.5 3.9 putative Sugar transferase compare
PP_3312 +0.5 1.3 putative Heat shock protein compare
PP_2247 +0.5 1.7 putative Endoribonuclease compare
PP_1344 +0.5 1.3 conserved protein of unknown function compare
PP_4843 +0.5 2.8 putative Urea ABC transporter, permease protein compare
PP_1066 +0.5 3.0 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_3121 +0.5 2.2 transcriptional regulator, LysR family compare
PP_3562 +0.5 3.2 conserved exported protein of unknown function compare
PP_0804 +0.5 3.3 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_1113 +0.5 3.8 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0306 +0.5 2.3 conserved protein of unknown function compare
PP_1544 +0.5 2.2 conserved protein of unknown function compare
PP_4342 +0.5 1.9 flagellar synthesis regulator, putative ATPase compare
PP_4670 +0.5 4.1 diguanylate cyclase compare
PP_3243 +0.5 1.9 Acetyltransferase, GNAT family compare
PP_1293 +0.5 1.0 molybdopterin synthase small subunit compare
PP_0276 +0.5 1.0 Transcriptional regulator, Cro/CI family compare
PP_5430 +0.5 1.0 protein of unknown function compare
PP_2121 +0.5 1.8 putative Lipoprotein compare
PP_5556 +0.5 2.0 putative bacteriophage lysis protein compare
PP_4517 +0.5 1.5 conserved protein of unknown function compare
PP_0963 +0.5 1.5 putative BolA family protein compare
PP_1482 +0.5 2.3 polyamine ABC transporter, permease protein compare
PP_1692 +0.5 1.5 conserved protein of unknown function compare
PP_4064 +0.4 3.7 isovaleryl-CoA dehydrogenase compare
PP_1503 +0.4 1.4 conserved protein of unknown function compare
PP_1386 +0.4 3.4 Probable efflux pump periplasmic linker TtgA compare
PP_0117 +0.4 2.9 Zn(2+) ABC transporter - permease subunit compare
PP_5486 +0.4 1.1 conserved protein of unknown function compare
PP_4328 +0.4 1.8 conserved protein of unknown function compare
PP_5597 +0.4 1.9 conserved protein of unknown function compare
PP_1808 +0.4 1.1 glucose-6-phosphate isomerase compare
PP_2002 +0.4 2.1 putative enzyme compare
PP_2309 +0.4 0.9 conserved protein of unknown function compare
PP_3040 +0.4 1.8 Pyocin R2_PP, holin compare
PP_1453 +0.4 3.5 putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity compare
PP_3831 +0.4 2.2 conserved protein of unknown function compare
PP_5621 +0.4 1.1 protein of unknown function compare
PP_5619 +0.4 1.4 protein of unknown function compare
PP_0048 +0.4 0.9 conserved protein of unknown function compare
PP_3002 +0.4 1.9 shikimate dehydrogenase-related enzyme compare
PP_0610 +0.4 1.9 conserved exported protein of unknown function compare
PP_5580 +0.4 0.9 protein of unknown function compare
PP_1556 +0.4 1.1 conserved protein of unknown function compare
PP_0775 +0.4 0.9 conserved protein of unknown function compare
PP_1142 +0.4 0.9 conserved protein of unknown function compare
PP_0152 +0.4 1.5 conserved exported protein of unknown function compare
PP_2189 +0.4 1.5 conserved protein of unknown function compare
PP_4390 +0.4 3.0 flagellar basal-body rod protein FlgC compare
PP_1770 +0.4 1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1307 +0.4 1.6 AsnC family transcriptional regulator compare
PP_4937 +0.4 1.8 toluene tolerance protein compare
PP_0178 +0.4 3.0 putative efflux pump compare
PP_3806 +0.4 1.7 Hydrolase, isochorismatase family compare
PP_3859 +0.4 2.5 conserved protein of unknown function compare
PP_5473 +0.4 1.2 putative transcriptional regulator, LuxR family compare
PP_4379 +0.4 2.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4768 +0.4 1.3 Exonuclease compare
PP_0176 +0.4 2.8 putative efflux transporter compare
PP_3732 +0.4 1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1385 +0.4 3.4 Probable efflux pump membrane transporter TtgB compare
PP_3198 +0.4 1.1 Ferredoxin, 2Fe-2S compare
PP_3899 +0.4 1.5 conserved protein of unknown function, hicB family compare
PP_2848 +0.4 1.6 urease accessory protein compare
PP_4982 +0.4 1.3 putative cytochrome b561, iron-regulated compare
PP_5084 +0.4 2.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0179 +0.4 2.7 putative efflux transporter compare
PP_5221 +0.4 1.7 conserved protein of unknown function, UPF0178 family compare
PP_4808 +0.4 0.8 23S rRNA m3psi1915 methyltransferase compare
PP_4738 +0.4 1.5 conserved exported protein of unknown function compare
PP_3559 +0.4 1.7 glycine betaine ABC transporter (permease) compare
PP_4892 +0.4 2.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1028 +0.4 1.8 Transcriptional regulator, LysR family compare
PP_4836 +0.4 1.5 conserved exported protein of unknown function compare
PP_2437 +0.4 2.4 putative Acyl-CoA dehydrogenase compare
PP_5023 +0.4 2.6 Amino acid ABC transporter, permease protein compare
PP_1410 +0.4 0.9 conserved protein of unknown function compare
PP_4560 +0.4 1.8 putative Ribonuclease BN compare
PP_5684 +0.4 2.4 protein of unknown function compare
PP_4073 +0.4 1.3 conserved exported protein of unknown function compare
PP_2127 +0.4 1.0 Sensor histidine kinase compare
PP_0766 +0.4 3.1 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_3138 +0.4 2.3 VirK domain protein compare
PP_4630 +0.4 2.3 Transcriptional regulator, MerR family compare
PP_4156 +0.4 1.0 Transcriptional regulator, LysR family compare
PP_3085 +0.4 2.0 putative Transmembrane sensor compare
PP_2079 +0.4 2.2 conserved protein of unknown function compare
PP_0191 +0.4 1.6 Transcriptional regulatory protein AlgQ compare
PP_3034 +0.4 1.3 putative Regulator protein compare
PP_2898 +0.3 1.1 conserved exported protein of unknown function compare
PP_2765 +0.3 0.6 putative Sulfonate monooxygenase MsuD compare
PP_4891 +0.3 2.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3126 +0.3 2.7 putative polysaccharide exported protein compare
PP_1813 +0.3 1.3 ComEA-related protein compare
PP_3131 +0.3 2.7 conserved membrane protein of unknown function compare
PP_1310 +0.3 1.2 conserved hypothetical protein compare
PP_4690 +0.3 1.6 Rieske 2Fe-2S family protein compare
PP_5337 +0.3 1.8 LysR family transcriptional regulator compare
PP_4981 +0.3 0.9 polyisoprene-binding protein, acidic stress response factor compare
PP_2054 +0.3 1.5 putative DNA-binding transcriptional regulator compare
PP_2226 +0.3 1.8 putative K(+)/H(+) antiporter subunit F compare
PP_4941 +0.3 2.3 conserved exported protein of unknown function compare
PP_2030 +0.3 1.5 conserved protein of unknown function compare
PP_1930 +0.3 1.8 arsenic resistance transcriptional regulator compare
PP_1153 +0.3 1.7 putative lipoprotein compare
PP_1550 +0.3 1.1 Transcriptional regulator, Cro/CI family compare
PP_0627 +0.3 1.3 conserved protein of unknown function compare
PP_1557 +0.3 1.7 conserved protein of unknown function compare
PP_5549 +0.3 2.0 conserved protein of unknown function compare
PP_2858 +0.3 1.1 conserved exported protein of unknown function compare
PP_4785 +0.3 1.9 conserved exported protein of unknown function compare
PP_5598 +0.3 1.3 conserved protein of unknown function compare
PP_2716 +0.3 1.5 arsenate reductase compare
PP_3323 +0.3 1.8 CobW/P47K family protein compare
PP_4184 +0.3 2.3 branched chain amino acid transporter compare
PP_4947 +0.3 2.9 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_2125 +0.3 1.6 lipid kinase compare
PP_1635 +0.3 1.2 DNA-binding response regulator compare
PP_3307 +0.3 1.1 conserved protein of unknown function compare
PP_2813 +0.3 1.5 BNR domain protein compare
PP_3978 +0.3 1.6 conserved protein of unknown function compare
PP_1369 +0.3 2.2 conserved protein of unknown function compare
PP_1523 +0.3 1.5 conserved protein of unknown function compare
PP_1235 +0.3 2.2 AhpC/TSA family protein compare
PP_2129 +0.3 1.5 conserved protein of unknown function compare
PP_0743 +0.3 2.3 conserved protein with NAD(P)-binding Rossmann-fold domain compare
PP_3063 +0.3 1.7 Pyocin R2_PP, tail formation protein compare
PP_5144 +0.3 1.7 conserved protein of unknown function compare
PP_1349 +0.3 1.8 ATP:cob(I)alamin adenosyltransferase compare
PP_0118 +0.3 2.5 zinc import ATP-binding protein compare
PP_5488 +0.3 1.4 conserved protein of unknown function compare
PP_1969 +0.3 2.2 putative Molybdenum cofactor biosynthesis protein A compare
PP_0414 +0.3 1.9 Polyamine ABC transporter, permease protein compare
PP_5514 +0.3 1.5 conserved protein of unknown function compare
PP_3281 +0.3 1.8 hydroxyphenylacetyl-CoA thioesterase compare
PP_2550 +0.3 0.8 putative transcriptional regulatory protein compare
PP_1265 +0.3 1.3 conserved protein of unknown function compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source 1-Pentanol in Pseudomonas putida KT2440

For carbon source 1-Pentanol across organisms