Experiment set16IT009 for Pseudomonas putida KT2440

Compare to:

3-methyl-3-butenol carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -6.6 -7.9 Carbamoyl-phosphate synthase small chain compare
PP_0293 -6.3 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5014 -5.8 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4067 -5.8 -11.7 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_1995 -5.6 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -5.4 -17.6 Carbamoyl-phosphate synthase large chain compare
PP_0356 -5.4 -10.9 malate synthase G compare
PP_0292 -5.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -5.1 -10.4 3-isopropylmalate dehydrogenase compare
PP_1985 -5.1 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_1088 -5.1 -10.9 Argininosuccinate synthase compare
PP_0083 -5.0 -5.9 tryptophan synthase beta chain compare
PP_0417 -5.0 -20.7 Anthranilate synthase component 1 compare
PP_4066 -4.9 -4.7 methylglutaconyl-CoA hydratase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_4678 -4.8 -18.1 Ketol-acid reductoisomerase compare
PP_4696 -4.8 -5.7 Nitrogen regulation protein NR(I) compare
PP_0422 -4.7 -7.3 Indole-3-glycerol phosphate synthase compare
PP_0967 -4.7 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -4.7 -5.5 tryptophan synthase alpha chain compare
PP_4116 -4.7 -14.4 isocitrate lyase compare
PP_4680 -4.6 -17.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -4.5 -9.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0966 -4.4 -11.4 Histidinol dehydrogenase compare
PP_5095 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_2001 -4.3 -11.7 O-succinylhomoserine sulfhydrylase compare
PP_0184 -4.3 -7.7 Argininosuccinate lyase compare
PP_3511 -4.2 -8.6 Branched-chain-amino-acid aminotransferase compare
PP_0691 -4.1 -6.3 Glutamate 5-kinase compare
PP_5098 -4.1 -10.3 methionine biosynthesis protein MetW compare
PP_0289 -4.1 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4799 -4.1 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4890 -4.0 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_1986 -4.0 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_5128 -4.0 -7.6 Dihydroxy-acid dehydratase compare
PP_4064 -4.0 -13.3 isovaleryl-CoA dehydrogenase compare
PP_4679 -3.9 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -3.9 -10.3 phosphoserine phosphatase compare
PP_4065 -3.9 -13.1 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_5659 -3.8 -6.3 protein of unknown function compare
PP_5097 -3.8 -14.0 homoserine O-acetyltransferase compare
PP_5289 -3.7 -5.7 Acetylglutamate kinase compare
PP_3999 -3.7 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5185 -3.7 -8.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0421 -3.7 -8.0 Anthranilate phosphoribosyltransferase compare
PP_4700 -3.5 -2.4 pantothenate synthetase compare
PP_4364 -3.4 -5.9 putative Anti-sigma F factor antagonist compare
PP_1025 -3.3 -12.3 2-isopropylmalate synthase compare
PP_0965 -3.3 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -3.2 -8.4 Ornithine carbamoyltransferase compare
PP_0362 -3.2 -13.2 Biotin synthase compare
PP_4122 -3.1 -3.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2371 -3.1 -9.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5015 -3.1 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0420 -3.0 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1111 -2.9 -7.1 putative Synthetase compare
PP_1654 -2.9 -4.3 cysteine synthase B compare
PP_1231 -2.9 -6.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3123 -2.9 -10.1 acetoacetyl CoA-transferase (subunit B) compare
PP_0363 -2.8 -12.4 8-amino-7-oxononanoate synthase compare
PP_2370 -2.8 -4.9 conserved protein of unknown function compare
PP_3122 -2.8 -6.3 acetoacetyl CoA-transferase (subunit A) compare
PP_0787 -2.7 -5.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1110 -2.7 -3.0 serine acetyltransferase compare
PP_3121 -2.7 -5.9 transcriptional regulator, LysR family compare
PP_0127 -2.7 -8.0 Thiol:disulfide interchange protein compare
PP_2665 -2.7 -6.1 Glycerol metabolism activator compare
PP_0719 -2.6 -1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1826 -2.6 -3.4 Hydrolase, isochorismatase family compare
PP_0378 -2.6 -8.9 Pyrroloquinoline-quinone synthase compare
PP_5155 -2.5 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0366 -2.5 -5.2 dethiobiotin synthetase compare
PP_4984 -2.4 -11.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4693 -2.4 -7.0 RNA polymerase-binding transcription factor DksA compare
PP_1109 -2.4 -12.8 Transcriptional regulator, GntR family compare
PP_0381 -2.4 -7.8 Coenzyme PQQ synthesis protein F compare
PP_2675 -2.4 -4.3 Cytochrome c-type protein compare
PP_0376 -2.3 -11.0 Coenzyme PQQ synthesis protein E compare
PP_4004 -2.2 -4.4 DNA translocase FtsK compare
PP_2682 -2.2 -7.5 Fe-containing alcohol dehydrogenase compare
PP_0364 -2.2 -9.3 pimeloyl-[acp] methyl ester esterase compare
PP_5217 -2.2 -15.4 Polyphosphate kinase compare
PP_2327 -2.2 -7.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0164 -2.2 -8.1 conserved protein of unknown function compare
PP_0365 -2.1 -10.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0339 -1.9 -6.0 Pyruvate dehydrogenase E1 component compare
PP_1656 -1.9 -5.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_0377 -1.8 -2.9 coenzyme PQQ synthesis protein D compare
PP_5313 -1.8 -2.8 DNA-binding protein HU-alpha compare
PP_1734 -1.8 -3.2 Probable septum site-determining protein MinC compare
PP_4699 -1.7 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4695 -1.6 -6.6 Sensory box histidine kinase compare
PP_1719 -1.6 -8.7 Tail-specific protease prc compare
PP_2414 -1.6 -1.5 conserved exported protein of unknown function compare
PP_1598 -1.6 -5.8 regulatory intramembrane protein RIP zinc protease compare
PP_0122 -1.6 -2.9 conserved exported protein of unknown function compare
PP_2402 -1.6 -2.8 putative Sensor histidine kinase compare
PP_2581 -1.6 -2.6 conserved protein of unknown function compare
PP_0291 -1.5 -1.9 conserved protein of unknown function compare
PP_0914 -1.5 -8.8 GGDEF domain protein compare
PP_3505 -1.4 -3.4 conserved protein of unknown function compare
PP_5085 -1.4 -6.7 malic enzyme B compare
PP_0379 -1.3 -5.4 Coenzyme PQQ synthesis protein B compare
PP_4124 -1.3 -4.5 NADH-quinone oxidoreductase subunit G compare
PP_3484 -1.3 -5.4 Response regulator receiver protein compare
PP_2388 -1.3 -3.3 Transporter, LysE family compare
PP_4131 -1.3 -5.4 NADH-quinone oxidoreductase subunit N compare
PP_5146 -1.3 -7.7 RNA pyrophosphohydrolase compare
PP_1898 -1.3 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_5538 -1.3 -6.7 putative ABC transporter, substrate-binding protein compare
PP_5347 -1.2 -7.7 pyruvate carboxylase subunit A compare
PP_1733 -1.2 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3105 -1.2 -2.4 conserved membrane protein of unknown function compare
PP_5748 -1.2 -2.2 cytochrome c heme lyase subunit compare
PP_4121 -1.2 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PP_0435 -1.2 -9.5 Peptidase, M23/M37 family compare
PP_3286 -1.2 -5.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4129 -1.2 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4964 -1.2 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4993 -1.2 -2.9 Glutathione synthetase compare
PP_4358 -1.2 -6.6 flagellar synthesis, switching and energizing component compare
PP_4565 -1.2 -8.4 Isocitrate dehydrogenase kinase/phosphatase compare
PP_0809 -1.2 -7.7 disulfide bond formation protein B compare
PP_1217 -1.1 -3.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2868 -1.1 -5.1 Transcriptional regulator, Cro/CI family compare
PP_1493 -1.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0393 -1.1 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4895 -1.1 -2.6 tRNA dimethylallyltransferase compare
PP_5652 -1.1 -2.1 conserved protein of unknown function, phage origin compare
PP_5346 -1.0 -6.6 pyruvate carboxylase subunit B compare
PP_2302 -1.0 -4.7 DNA-binding, ATP-dependent protease compare
PP_4126 -1.0 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_4098 -1.0 -1.4 UvrABC system protein C compare
PP_0874 -1.0 -2.3 conserved protein of unknown function compare
PP_1616 -1.0 -6.5 formaldehyde dehydrogenase, glutathione-dependent compare
PP_1430 -1.0 -5.7 putative periplasmic serine endoprotease DegP-like compare
PP_2433 -1.0 -2.0 conserved protein of unknown function compare
PP_2390 -1.0 -5.2 Transcriptional regulator, LysR family compare
PP_1428 -1.0 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_0003 -1.0 -2.5 16S RNA methyltransferase compare
PP_4923 -1.0 -6.4 Outer membrane efflux protein compare
PP_4874 -1.0 -1.2 50S ribosomal protein L9 compare
PP_4320 -1.0 -3.5 cytochrome c-type biogenesis protein compare
PP_1941 -1.0 -4.8 conserved protein of unknown function compare
PP_2907 -0.9 -3.3 DNA-binding response regulator compare
PP_4063 -0.9 -6.7 putative Long-chain-fatty-acid-CoA ligase compare
PP_2168 -0.9 -6.5 Transaldolase compare
PP_2328 -0.9 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_3946 -0.9 -1.4 HTH-type transcriptional repressor NicR compare
PP_2679 -0.9 -6.2 quinoprotein ethanol dehydrogenase compare
PP_5145 -0.9 -8.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1664 -0.9 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_3365 -0.9 -1.8 Acetolactate synthase compare
PP_4994 -0.9 -3.5 conserved protein of unknown function compare
PP_2683 -0.9 -2.1 putative sensory box histidine kinase/response regulator compare
PP_5303 -0.9 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2737 -0.9 -1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4368 -0.9 -4.9 flagellar motor switch protein compare
PP_0566 -0.9 -1.3 translation-related factor compare
PP_3649 -0.9 -2.4 Transcriptional regulator, GntR family compare
PP_5230 -0.9 -1.8 Tyrosine recombinase XerC compare
PP_4804 -0.8 -1.9 RlpA-like lipoprotein compare
PP_1233 -0.8 -4.0 sulfurtransferase compare
PP_2667 -0.8 -5.3 ABC transporter compare
PP_2345 -0.8 -2.3 conserved exported protein of unknown function compare
PP_5017 -0.8 -1.4 Sec-independent protein translocase protein TatB compare
PP_t12 -0.8 -1.2 tRNA-Thr compare
PP_5348 -0.8 -3.7 Transcriptional regulator, LysR family compare
PP_2217 -0.8 -2.8 enoyl-CoA hydratase compare
PP_1935 -0.8 -1.7 Transcriptional regulator, Cro/CI family compare
PP_5338 -0.8 -1.8 aspartate ammonia-lyase compare
PP_2356 -0.8 -5.2 putative Phytochrome family protein compare
PP_3102 -0.8 -3.0 conserved protein of unknown function compare
PP_4797 -0.8 -1.4 conserved protein of unknown function compare
PP_5227 -0.8 -3.7 diaminopimelate decarboxylase compare
PP_1216 -0.8 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5203 -0.8 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_1629 -0.8 -3.5 Protein RecA compare
PP_2669 -0.8 -4.2 putative Outer membrane protein compare
PP_4793 -0.8 -2.1 conserved protein of unknown function compare
PP_1876 -0.7 -3.1 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1387 -0.7 -2.3 Probable HTH-type transcriptional regulator TtgR compare
PP_4130 -0.7 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4480 -0.7 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_0119 -0.7 -2.6 putative zinc uptake regulation protein ZUR compare
PP_2820 -0.7 -1.6 HTH-type transcriptional regulator nfxB compare
PP_2087 -0.7 -1.9 CmpX protein compare
PP_1679 -0.7 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1176 -0.7 -1.8 conserved protein of unknown function compare
PP_5393 -0.7 -0.9 putative metal-binding chaperone compare
PP_4977 -0.7 -5.3 5,10-methylenetetrahydrofolate reductase compare
PP_3073 -0.7 -3.2 3-hydroxybutyrate dehydrogenase compare
PP_0484 -0.7 -2.8 transporter of an unknown substrate compare
PP_5575 -0.7 -2.0 conserved protein of unknown function compare
PP_4380 -0.7 -5.9 Flagellar hook-associated protein FlgL compare
PP_0833 -0.7 -1.4 queuine tRNA-ribosyltransferase compare
PP_2389 -0.7 -3.4 conserved protein of unknown function compare
PP_0949 -0.7 -3.6 putative ATP-binding protein UPF0042 compare
PP_3359 -0.7 -1.5 putative Hydroxycinnamic acid degradation regulator compare
PP_1468 -0.7 -1.5 Tyrosine recombinase XerD compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source 3-methyl-3-butenol in Pseudomonas putida KT2440

For carbon source 3-methyl-3-butenol across organisms