Experiment set16IT007 for Pseudomonas putida KT2440

Compare to:

1,3-Butandiol carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -6.2 -8.4 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.9 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -5.2 -7.8 3-isopropylmalate dehydratase large subunit compare
PP_1215 -4.8 -3.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0967 -4.8 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0184 -4.6 -8.3 Argininosuccinate lyase compare
PP_0691 -4.5 -6.9 Glutamate 5-kinase compare
PP_4696 -4.4 -7.4 Nitrogen regulation protein NR(I) compare
PP_4724 -4.4 -7.7 Carbamoyl-phosphate synthase small chain compare
PP_0082 -4.3 -6.6 tryptophan synthase alpha chain compare
PP_5014 -4.3 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -4.2 -11.9 Histidinol dehydrogenase compare
PP_1986 -4.2 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_5185 -4.2 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4116 -4.1 -14.7 isocitrate lyase compare
PP_1079 -4.1 -9.0 Ornithine carbamoyltransferase compare
PP_4723 -4.0 -16.8 Carbamoyl-phosphate synthase large chain compare
PP_0417 -4.0 -18.4 Anthranilate synthase component 1 compare
PP_5289 -4.0 -6.6 Acetylglutamate kinase compare
PP_5659 -3.9 -7.0 protein of unknown function compare
PP_4799 -3.9 -3.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4890 -3.9 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0290 -3.9 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -3.8 -18.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -3.8 -11.5 3-isopropylmalate dehydrogenase compare
PP_1088 -3.7 -13.8 Argininosuccinate synthase compare
PP_5015 -3.6 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4678 -3.6 -16.9 Ketol-acid reductoisomerase compare
PP_0356 -3.6 -11.8 malate synthase G compare
PP_3511 -3.6 -8.0 Branched-chain-amino-acid aminotransferase compare
PP_0292 -3.6 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4679 -3.4 -9.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -3.4 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_1328 -3.4 -4.1 Protein MraZ compare
PP_0083 -3.4 -8.4 tryptophan synthase beta chain compare
PP_4909 -3.4 -11.4 phosphoserine phosphatase compare
PP_5098 -3.3 -11.1 methionine biosynthesis protein MetW compare
PP_5155 -3.3 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0421 -3.3 -9.3 Anthranilate phosphoribosyltransferase compare
PP_1654 -3.2 -4.4 cysteine synthase B compare
PP_5095 -3.2 -3.7 pyrroline-5-carboxylate reductase compare
PP_1826 -3.1 -4.6 Hydrolase, isochorismatase family compare
PP_5097 -3.0 -13.5 homoserine O-acetyltransferase compare
PP_5128 -2.9 -8.4 Dihydroxy-acid dehydratase compare
PP_2001 -2.9 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_4695 -2.8 -9.3 Sensory box histidine kinase compare
PP_4999 -2.8 -3.7 dihydroorotase-like protein compare
PP_4700 -2.8 -3.8 pantothenate synthetase compare
PP_3999 -2.8 -10.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4129 -2.8 -5.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0965 -2.8 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2371 -2.7 -8.0 Sulphite reductase hemoprotein, beta subunit compare
PP_3123 -2.6 -9.3 acetoacetyl CoA-transferase (subunit B) compare
PP_4131 -2.6 -7.8 NADH-quinone oxidoreductase subunit N compare
PP_0339 -2.6 -7.0 Pyruvate dehydrogenase E1 component compare
PP_1111 -2.5 -10.8 putative Synthetase compare
PP_2370 -2.5 -4.2 conserved protein of unknown function compare
PP_4699 -2.5 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0420 -2.4 -9.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2868 -2.4 -9.4 Transcriptional regulator, Cro/CI family compare
PP_3122 -2.4 -7.6 acetoacetyl CoA-transferase (subunit A) compare
PP_1025 -2.3 -10.8 2-isopropylmalate synthase compare
PP_1109 -2.3 -14.5 Transcriptional regulator, GntR family compare
PP_3105 -2.3 -4.4 conserved membrane protein of unknown function compare
PP_1110 -2.3 -2.7 serine acetyltransferase compare
PP_4124 -2.2 -6.4 NADH-quinone oxidoreductase subunit G compare
PP_3121 -2.2 -3.7 transcriptional regulator, LysR family compare
PP_2682 -2.2 -8.1 Fe-containing alcohol dehydrogenase compare
PP_2327 -2.1 -5.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4693 -2.0 -5.3 RNA polymerase-binding transcription factor DksA compare
PP_4120 -2.0 -4.9 NADH-quinone oxidoreductase subunit B compare
PP_4122 -2.0 -3.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2675 -1.9 -4.5 Cytochrome c-type protein compare
PP_3649 -1.9 -5.1 Transcriptional regulator, GntR family compare
PP_1734 -1.9 -3.6 Probable septum site-determining protein MinC compare
PP_3073 -1.9 -9.9 3-hydroxybutyrate dehydrogenase compare
PP_0378 -1.8 -9.6 Pyrroloquinoline-quinone synthase compare
PP_5347 -1.8 -10.2 pyruvate carboxylase subunit A compare
PP_2665 -1.8 -7.2 Glycerol metabolism activator compare
PP_5346 -1.8 -9.2 pyruvate carboxylase subunit B compare
PP_1233 -1.8 -6.8 sulfurtransferase compare
PP_4121 -1.7 -6.2 NADH-quinone oxidoreductase subunit C/D compare
PP_0381 -1.7 -8.9 Coenzyme PQQ synthesis protein F compare
PP_1428 -1.6 -3.5 Sigma factor AlgU negative regulatory protein compare
PP_5227 -1.6 -6.8 diaminopimelate decarboxylase compare
PP_5161 -1.6 -5.9 putative lysophospholipase compare
PP_0291 -1.6 -3.0 conserved protein of unknown function compare
PP_1309 -1.6 -6.7 conserved exported protein of unknown function compare
PP_1217 -1.6 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1231 -1.6 -5.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3075 -1.5 -5.2 putative transcriptional regulator compare
PP_2433 -1.5 -2.4 conserved protein of unknown function compare
PP_1656 -1.5 -5.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_2402 -1.5 -2.6 putative Sensor histidine kinase compare
PP_1294 -1.5 -4.6 molybdopterin synthase large subunit compare
PP_4004 -1.5 -3.9 DNA translocase FtsK compare
PP_0379 -1.4 -7.9 Coenzyme PQQ synthesis protein B compare
PP_2000 -1.4 -1.6 amidophosphoribosyl transferase compare
PP_4130 -1.4 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4480 -1.4 -7.7 arginine N-succinyltransferase, subunit alpha compare
PP_0376 -1.4 -8.3 Coenzyme PQQ synthesis protein E compare
PP_5085 -1.4 -5.8 malic enzyme B compare
PP_0937 -1.4 -6.5 endoribonuclease G (RNAse G) compare
PP_4726 -1.4 -2.8 Chaperone protein DnaJ compare
PP_4126 -1.3 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_0735 -1.3 -2.7 molybdopterin-synthase adenylyltransferase compare
PP_1216 -1.3 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3603 -1.3 -6.1 Transcriptional regulator, GntR family compare
PP_1292 -1.3 -5.9 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_5348 -1.3 -6.7 Transcriptional regulator, LysR family compare
PP_2328 -1.3 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_4782 -1.2 -5.5 Phosphomethylpyrimidine kinase compare
PP_3286 -1.2 -5.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5104 -1.2 -7.5 thiazole synthase compare
PP_4254 -1.2 -2.9 conserved protein of unknown function compare
PP_0368 -1.2 -7.5 putative Acyl-CoA dehydrogenase compare
PP_5705 -1.2 -3.0 protein of unknown function compare
PP_2326 -1.2 -7.6 Universal stress protein compare
PP_5145 -1.2 -10.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5313 -1.2 -3.5 DNA-binding protein HU-alpha compare
PP_2123 -1.2 -6.2 molybdenum::molybdopterin ligase compare
PP_0787 -1.2 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1664 -1.2 -3.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_3828 -1.1 -6.9 Molybdate-binding periplasmic protein compare
PP_3755 -1.1 -6.2 3-hydroxybutyryl-CoA dehydrogenase compare
PP_2806 -1.1 -5.3 Transcriptional regulator, TetR family compare
PP_2136 -1.1 -4.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4923 -1.1 -7.0 Outer membrane efflux protein compare
PP_1860 -1.1 -4.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_2217 -1.1 -3.3 enoyl-CoA hydratase compare
PP_1075 -1.0 -7.3 glycerol kinase compare
PP_4143 -1.0 -4.5 conserved protein of unknown function compare
PP_1912 -1.0 -4.2 Phosphate acyltransferase compare
PP_4289 -1.0 -7.1 conserved membrane protein of unknown function compare
PP_5114 -1.0 -1.8 putative adenine methyltransferase compare
PP_3447 -1.0 -1.5 conserved membrane protein of unknown function compare
PP_4010 -1.0 -3.9 DNA replication inhibitor compare
PP_5146 -1.0 -6.0 RNA pyrophosphohydrolase compare
PP_4793 -1.0 -2.4 conserved protein of unknown function compare
PP_3829 -1.0 -3.2 Molybdenum transport system permease protein ModB compare
PP_2324 -1.0 -4.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1941 -0.9 -4.5 conserved protein of unknown function compare
PP_5582 -0.9 -2.0 conserved protein of unknown function compare
PP_5338 -0.9 -2.4 aspartate ammonia-lyase compare
PP_1237 -0.9 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3484 -0.9 -4.5 Response regulator receiver protein compare
PP_4895 -0.9 -2.7 tRNA dimethylallyltransferase compare
PP_4058 -0.9 -6.0 1,4-alpha-glucan branching enzyme compare
PP_4268 -0.9 -1.8 nucleoid-associated broad specificity regulator compare
PP_1021 -0.8 -4.2 DNA-binding transcriptional regulator compare
PP_3790 -0.8 -5.6 diaminopimelate epimerase compare
PP_4098 -0.8 -1.5 UvrABC system protein C compare
PP_5748 -0.8 -1.3 cytochrome c heme lyase subunit compare
PP_0119 -0.8 -2.7 putative zinc uptake regulation protein ZUR compare
PP_2720 -0.8 -1.6 conserved protein of unknown function compare
PP_4009 -0.8 -1.7 ATP-dependent Clp protease adapter protein ClpS compare
PP_0025 -0.8 -1.5 hypothetical protein compare
PP_4262 -0.8 -2.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0856 -0.8 -2.6 conserved lipoprotein of unknown function compare
PP_2999 -0.8 -1.9 Glyoxalase family protein compare
PP_1348 -0.8 -3.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0949 -0.8 -4.0 putative ATP-binding protein UPF0042 compare
PP_3830 -0.8 -5.6 Molybdenum import ATP-binding protein ModC compare
PP_1702 -0.8 -2.8 Recombination-associated protein RdgC compare
PP_4320 -0.8 -3.3 cytochrome c-type biogenesis protein compare
PP_4247 -0.8 -1.8 Exonuclease compare
PP_0409 -0.8 -5.2 Sensory box histidine kinase compare
PP_3946 -0.7 -0.9 HTH-type transcriptional repressor NicR compare
PP_2631 -0.7 -2.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3776 -0.7 -5.2 putative permease (RarD protein) compare
PP_1824 -0.7 -1.5 Smr domain protein compare
PP_1074 -0.7 -2.6 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3074 -0.7 -2.8 D-beta-hydroxybutyrate permease compare
PP_1293 -0.7 -1.2 molybdopterin synthase small subunit compare
PP_5717 -0.7 -1.9 conserved protein of unknown function compare
PP_0058 -0.7 -6.5 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1430 -0.7 -5.1 putative periplasmic serine endoprotease DegP-like compare
PP_1553 -0.7 -1.7 conserved protein of unknown function compare
PP_0120 -0.7 -4.2 putative zinc ABC transporter compare
PP_2302 -0.7 -3.3 DNA-binding, ATP-dependent protease compare
PP_3245 -0.7 -1.3 conserved protein of unknown function compare
PP_2087 -0.7 -2.0 CmpX protein compare
PP_1655 -0.7 -2.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1994 -0.7 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_2416 -0.7 -2.1 putative Iron ABC transporter, ATP-binding protein compare
PP_0127 -0.7 -3.8 Thiol:disulfide interchange protein compare
PP_0377 -0.7 -1.7 coenzyme PQQ synthesis protein D compare
PP_4565 -0.7 -5.3 Isocitrate dehydrogenase kinase/phosphatase compare
PP_1076 -0.7 -3.4 aquaglyceroporin compare
PP_4734 -0.7 -4.2 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0685 -0.7 -2.1 conserved protein of unknown function compare
PP_2666 -0.7 -2.8 conserved exported protein of unknown function compare
PP_2348 -0.7 -3.6 Sensor histidine kinase compare
PP_5035 -0.7 -4.1 Histidine utilization repressor compare
PP_1326 -0.7 -2.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0248 -0.7 -4.9 Probable alpha-L-glutamate ligase compare
PP_4159 -0.7 -1.8 Potassium-transporting ATPase C chain compare
PP_0118 -0.7 -4.5 zinc import ATP-binding protein compare
PP_1304 -0.7 -4.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source 1,3-Butandiol in Pseudomonas putida KT2440

For carbon source 1,3-Butandiol across organisms