Experiment set16IT006 for Pseudomonas putida KT2440

Compare to:

1,3-Butandiol carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4116 -6.6 -12.7 isocitrate lyase compare
PP_4679 -6.6 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -6.4 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -6.3 -8.6 Indole-3-glycerol phosphate synthase compare
PP_0290 -6.0 -8.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -6.0 -19.1 Carbamoyl-phosphate synthase large chain compare
PP_1079 -5.8 -7.9 Ornithine carbamoyltransferase compare
PP_1995 -5.7 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5014 -5.6 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4724 -5.5 -11.6 Carbamoyl-phosphate synthase small chain compare
PP_3511 -5.4 -12.5 Branched-chain-amino-acid aminotransferase compare
PP_4680 -5.4 -18.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3123 -5.4 -12.4 acetoacetyl CoA-transferase (subunit B) compare
PP_1988 -5.3 -11.0 3-isopropylmalate dehydrogenase compare
PP_0184 -5.3 -7.3 Argininosuccinate lyase compare
PP_5015 -5.3 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1985 -5.3 -8.0 3-isopropylmalate dehydratase large subunit compare
PP_1088 -5.2 -13.0 Argininosuccinate synthase compare
PP_4999 -5.2 -3.6 dihydroorotase-like protein compare
PP_0356 -5.2 -11.4 malate synthase G compare
PP_0417 -5.1 -21.2 Anthranilate synthase component 1 compare
PP_0083 -5.1 -7.0 tryptophan synthase beta chain compare
PP_5659 -5.1 -6.0 protein of unknown function compare
PP_0082 -5.1 -6.0 tryptophan synthase alpha chain compare
PP_1986 -5.1 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_4909 -5.0 -11.2 phosphoserine phosphatase compare
PP_4678 -5.0 -20.1 Ketol-acid reductoisomerase compare
PP_0966 -4.8 -14.7 Histidinol dehydrogenase compare
PP_5289 -4.7 -7.2 Acetylglutamate kinase compare
PP_0421 -4.7 -8.4 Anthranilate phosphoribosyltransferase compare
PP_5185 -4.7 -8.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4696 -4.6 -8.3 Nitrogen regulation protein NR(I) compare
PP_0289 -4.6 -10.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4799 -4.4 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0691 -4.4 -6.3 Glutamate 5-kinase compare
PP_0965 -4.3 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5128 -4.2 -7.9 Dihydroxy-acid dehydratase compare
PP_5097 -4.1 -15.3 homoserine O-acetyltransferase compare
PP_2371 -4.1 -10.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3121 -4.0 -6.2 transcriptional regulator, LysR family compare
PP_5155 -4.0 -7.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2001 -3.9 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_4890 -3.9 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -3.9 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4700 -3.8 -2.6 pantothenate synthetase compare
PP_0420 -3.8 -11.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3999 -3.7 -10.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5098 -3.7 -10.9 methionine biosynthesis protein MetW compare
PP_3122 -3.4 -5.4 acetoacetyl CoA-transferase (subunit A) compare
PP_2327 -3.4 -9.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1109 -3.3 -13.6 Transcriptional regulator, GntR family compare
PP_1110 -3.3 -5.3 serine acetyltransferase compare
PP_3073 -3.1 -11.5 3-hydroxybutyrate dehydrogenase compare
PP_1111 -3.0 -8.3 putative Synthetase compare
PP_5095 -2.7 -3.7 pyrroline-5-carboxylate reductase compare
PP_0393 -2.7 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4122 -2.6 -3.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1025 -2.6 -9.1 2-isopropylmalate synthase compare
PP_1826 -2.6 -5.1 Hydrolase, isochorismatase family compare
PP_2328 -2.6 -6.8 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -2.5 -3.0 conserved protein of unknown function compare
PP_4695 -2.4 -7.6 Sensory box histidine kinase compare
PP_4130 -2.4 -4.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4126 -2.4 -3.1 NADH-quinone oxidoreductase subunit I compare
PP_4693 -2.4 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_4004 -2.3 -5.2 DNA translocase FtsK compare
PP_5347 -2.3 -14.7 pyruvate carboxylase subunit A compare
PP_5346 -2.2 -10.5 pyruvate carboxylase subunit B compare
PP_2868 -2.2 -9.5 Transcriptional regulator, Cro/CI family compare
PP_4131 -2.1 -7.7 NADH-quinone oxidoreductase subunit N compare
PP_4121 -2.1 -7.1 NADH-quinone oxidoreductase subunit C/D compare
PP_1233 -2.1 -8.2 sulfurtransferase compare
PP_3075 -2.1 -7.0 putative transcriptional regulator compare
PP_1231 -2.1 -8.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4120 -2.0 -5.1 NADH-quinone oxidoreductase subunit B compare
PP_1654 -2.0 -4.6 cysteine synthase B compare
PP_0291 -2.0 -2.0 conserved protein of unknown function compare
PP_0787 -2.0 -6.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4124 -1.9 -6.2 NADH-quinone oxidoreductase subunit G compare
PP_3603 -1.9 -9.3 Transcriptional regulator, GntR family compare
PP_4782 -1.9 -5.9 Phosphomethylpyrimidine kinase compare
PP_4699 -1.9 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5145 -1.8 -16.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4364 -1.8 -4.3 putative Anti-sigma F factor antagonist compare
PP_5085 -1.8 -7.5 malic enzyme B compare
PP_1734 -1.8 -3.7 Probable septum site-determining protein MinC compare
PP_3790 -1.7 -10.3 diaminopimelate epimerase compare
PP_0164 -1.7 -6.5 conserved protein of unknown function compare
PP_1656 -1.7 -6.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_2433 -1.7 -4.5 conserved protein of unknown function compare
PP_3776 -1.6 -9.8 putative permease (RarD protein) compare
PP_0339 -1.6 -6.1 Pyruvate dehydrogenase E1 component compare
PP_4129 -1.6 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0914 -1.6 -9.4 GGDEF domain protein compare
PP_5348 -1.6 -9.8 Transcriptional regulator, LysR family compare
PP_1664 -1.6 -3.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_0127 -1.5 -5.6 Thiol:disulfide interchange protein compare
PP_5104 -1.5 -8.3 thiazole synthase compare
PP_1493 -1.5 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0735 -1.5 -3.2 molybdopterin-synthase adenylyltransferase compare
PP_3649 -1.5 -4.5 Transcriptional regulator, GntR family compare
PP_1994 -1.3 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4480 -1.3 -8.7 arginine N-succinyltransferase, subunit alpha compare
PP_1217 -1.3 -3.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3105 -1.3 -3.1 conserved membrane protein of unknown function compare
PP_1428 -1.2 -2.7 Sigma factor AlgU negative regulatory protein compare
PP_0248 -1.2 -8.9 Probable alpha-L-glutamate ligase compare
PP_5748 -1.2 -3.0 cytochrome c heme lyase subunit compare
PP_1237 -1.2 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5303 -1.2 -5.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5227 -1.2 -6.1 diaminopimelate decarboxylase compare
PP_1348 -1.2 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0381 -1.1 -7.1 Coenzyme PQQ synthesis protein F compare
PP_4369 -1.1 -6.8 Flagellar M-ring protein compare
PP_1215 -1.1 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_2682 -1.1 -5.6 Fe-containing alcohol dehydrogenase compare
PP_4895 -1.1 -3.3 tRNA dimethylallyltransferase compare
PP_t29 -1.1 -1.5 tRNA-Ala compare
PP_2675 -1.1 -3.6 Cytochrome c-type protein compare
PP_4358 -1.1 -6.0 flagellar synthesis, switching and energizing component compare
PP_3074 -1.1 -3.5 D-beta-hydroxybutyrate permease compare
PP_0949 -1.1 -5.4 putative ATP-binding protein UPF0042 compare
PP_4098 -1.1 -2.3 UvrABC system protein C compare
PP_4565 -1.0 -7.9 Isocitrate dehydrogenase kinase/phosphatase compare
PP_5217 -1.0 -8.9 Polyphosphate kinase compare
PP_4368 -1.0 -4.2 flagellar motor switch protein compare
PP_0833 -1.0 -2.0 queuine tRNA-ribosyltransferase compare
PP_1984 -1.0 -4.6 Transcriptional regulator, LysR family compare
PP_4874 -1.0 -1.4 50S ribosomal protein L9 compare
PP_0809 -1.0 -6.8 disulfide bond formation protein B compare
PP_0948 -1.0 -2.5 Phosphocarrier protein HPr compare
PP_2388 -0.9 -3.7 Transporter, LysE family compare
PP_0362 -0.9 -7.1 Biotin synthase compare
PP_3484 -0.9 -4.2 Response regulator receiver protein compare
PP_5575 -0.9 -2.7 conserved protein of unknown function compare
PP_2806 -0.9 -3.8 Transcriptional regulator, TetR family compare
PP_1216 -0.9 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3777 -0.9 -5.3 conserved protein of unknown function compare
PP_4370 -0.9 -4.2 Flagellar hook-basal body complex protein FliE compare
PP_1074 -0.9 -3.1 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5507 -0.9 -2.7 protein of unknown function compare
PP_3102 -0.9 -2.9 conserved protein of unknown function compare
PP_3731 -0.9 -6.3 Transcriptional regulator, TetR family compare
PP_2665 -0.8 -4.3 Glycerol metabolism activator compare
PP_2683 -0.8 -3.2 putative sensory box histidine kinase/response regulator compare
PP_4380 -0.8 -7.3 Flagellar hook-associated protein FlgL compare
PP_1468 -0.8 -2.4 Tyrosine recombinase XerD compare
PP_2414 -0.8 -1.1 conserved exported protein of unknown function compare
PP_4793 -0.8 -2.5 conserved protein of unknown function compare
PP_4922 -0.8 -5.8 Phosphomethylpyrimidine synthase compare
PP_5313 -0.8 -2.9 DNA-binding protein HU-alpha compare
PP_5338 -0.8 -2.3 aspartate ammonia-lyase compare
PP_5225 -0.8 -1.7 frataxin compare
PP_5035 -0.8 -4.6 Histidine utilization repressor compare
PP_5230 -0.8 -2.6 Tyrosine recombinase XerC compare
PP_4375 -0.8 -5.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_5146 -0.8 -4.8 RNA pyrophosphohydrolase compare
PP_2390 -0.8 -5.1 Transcriptional regulator, LysR family compare
PP_0376 -0.8 -6.0 Coenzyme PQQ synthesis protein E compare
PP_0057 -0.8 -6.7 major facilitator family transporter compare
PP_2794 -0.8 -2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0986 -0.8 -3.6 aminomethyltransferase compare
PP_1629 -0.8 -3.5 Protein RecA compare
PP_1353 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_0653 -0.8 -1.7 conserved protein of unknown function compare
PP_4058 -0.8 -4.9 1,4-alpha-glucan branching enzyme compare
PP_2168 -0.8 -5.5 Transaldolase compare
PP_2136 -0.7 -3.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4378 -0.7 -6.3 flagellin, filament structural protein compare
PP_5216 -0.7 -1.8 exopolyphosphatase compare
PP_1099 -0.7 -2.4 Cold shock protein CapB compare
PP_2302 -0.7 -3.3 DNA-binding, ATP-dependent protease compare
PP_0378 -0.7 -4.4 Pyrroloquinoline-quinone synthase compare
PP_0593 -0.7 -1.1 putative ribosome-binding factor compare
PP_1733 -0.7 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0377 -0.7 -1.5 coenzyme PQQ synthesis protein D compare
PP_3245 -0.7 -2.3 conserved protein of unknown function compare
PP_5027 -0.7 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2378 -0.7 -1.8 Fe/S biogenesis protein NfuA compare
PP_4847 -0.7 -2.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_2070 -0.7 -2.1 Transcriptional regulator, AraC family compare
PP_1112 -0.7 -5.3 conserved membrane protein of unknown function compare
PP_0775 -0.7 -1.8 conserved protein of unknown function compare
PP_2720 -0.7 -1.4 conserved protein of unknown function compare
PP_1075 -0.7 -4.9 glycerol kinase compare
PP_4354 -0.7 -2.5 flagellar export apparatus subunit compare
PP_4396 -0.7 -3.1 conserved protein of unknown function compare
PP_0379 -0.7 -3.8 Coenzyme PQQ synthesis protein B compare
PP_5161 -0.7 -4.0 putative lysophospholipase compare
PP_3779 -0.7 -4.1 Transcriptional regulator, LysR family compare
PP_2972 -0.7 -1.7 conserved protein of unknown function compare
PP_1941 -0.7 -3.5 conserved protein of unknown function compare
PP_0163 -0.7 -5.0 putative transcriptional regulator compare
PP_2999 -0.7 -1.8 Glyoxalase family protein compare
PP_3789 -0.7 -3.6 putative Efflux transporter compare
PP_3946 -0.7 -1.4 HTH-type transcriptional repressor NicR compare
PP_0022 -0.7 -1.1 hypothetical protein compare
PP_2000 -0.6 -1.2 amidophosphoribosyl transferase compare
PP_4923 -0.6 -4.3 Outer membrane efflux protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source 1,3-Butandiol in Pseudomonas putida KT2440

For carbon source 1,3-Butandiol across organisms