Experiment set16IT006 for Pseudomonas putida KT2440

Compare to:

1,3-Butandiol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +1.8 15.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_4373 +1.5 13.0 Transcriptional regulator FleQ compare
PP_5232 +1.3 4.5 conserved protein of unknown function compare
PP_0168 +1.2 11.8 putative surface adhesion protein compare
PP_0166 +1.2 10.7 HlyD family secretion protein compare
PP_0167 +1.2 10.9 Toxin secretion ATP-binding protein compare
PP_0165 +1.2 10.9 GGDEF domain protein compare
PP_4519 +1.1 10.4 Agglutination protein compare
PP_2387 +1.1 4.7 conserved protein of unknown function compare
PP_4994 +1.0 6.4 conserved protein of unknown function compare
PP_0276 +1.0 2.7 Transcriptional regulator, Cro/CI family compare
PP_0319 +1.0 3.3 conserved protein of unknown function compare
PP_0261 +0.9 6.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4171 +0.9 7.1 conserved exported protein of unknown function compare
PP_5053 +0.9 4.9 Protein-export protein SecB compare
PP_0185 +0.8 6.7 Positive alginate biosynthesis regulatory protein compare
PP_5706 +0.8 2.5 Sec translocation complex - SecG subunit compare
PP_5107 +0.8 2.5 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_5491 +0.7 3.2 conserved protein of unknown function with SEC-C motif domain compare
PP_0719 +0.7 1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4942 +0.7 2.0 conserved protein of unknown function compare
PP_5000 +0.7 1.9 peptidase component of the ATP-dependent HslVU protease compare
PP_4944 +0.7 2.6 Carbamoyltransferase compare
PP_5093 +0.7 1.7 twitching motility protein compare
PP_2765 +0.7 1.4 putative Sulfonate monooxygenase MsuD compare
PP_5429 +0.7 3.5 protein of unknown function compare
PP_5350 +0.7 3.4 Transcriptional regulator, RpiR family compare
PP_1898 +0.7 3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1113 +0.7 4.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2747 +0.7 2.3 conserved protein of unknown function compare
PP_4329 +0.6 2.6 FlhB domain protein compare
PP_1054 +0.6 1.7 Type II secretion pathway protein XcpZ compare
PP_4296 +0.6 2.0 conserved exported protein of unknown function compare
PP_4893 +0.6 4.8 GTPase HflX compare
PP_5076 +0.6 5.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_4363 +0.6 4.8 Sensor histidine kinase/response regulator compare
PP_0574 +0.6 5.2 DNA-binding response regulator, LuxR family compare
PP_1776 +0.6 5.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_3810 +0.6 2.5 conserved protein of unknown function compare
PP_1650 +0.6 5.5 Sensor protein GacS compare
PP_3312 +0.6 1.6 putative Heat shock protein compare
PP_2319 +0.6 3.7 conserved protein of unknown function compare
PP_4060 +0.6 5.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1503 +0.6 1.8 conserved protein of unknown function compare
PP_0406 +0.6 4.2 Nucleotidyltransferase family protein compare
PP_1097 +0.6 1.5 Methionine--tRNA ligase compare
PP_4099 +0.5 5.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1800 +0.5 4.4 Oxidoreductase Rmd compare
PP_0355 +0.5 1.8 Response regulator compare
PP_4390 +0.5 3.8 flagellar basal-body rod protein FlgC compare
PP_2889 +0.5 2.9 putative Transmembrane regulator PrtR compare
PP_3831 +0.5 2.6 conserved protein of unknown function compare
PP_4959 +0.5 3.9 diguanylate cyclase compare
PP_4824 +0.5 3.2 Sensor histidine kinase/response regulator compare
PP_3761 +0.5 4.3 Sensor histidine kinase/response regulator compare
PP_1799 +0.5 4.5 GDP-mannose 4,6-dehydratase compare
PP_0440 +0.5 2.5 Elongation factor Tu-A compare
PP_4904 +0.5 3.6 Flagellar motor rotation protein compare
PP_2716 +0.5 1.6 arsenate reductase compare
PP_3637 +0.5 1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1176 +0.5 1.7 conserved protein of unknown function compare
PP_1778 +0.5 2.9 Lipopolysaccharide ABC export system, permease protein compare
PP_5331 +0.5 2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_4391 +0.5 3.6 flagellar basal-body rod protein FlgB compare
PP_3083 +0.5 2.4 putative Membrane protein compare
PP_1801 +0.5 4.0 Glycosyl transferase WbpY compare
PP_1310 +0.5 2.0 conserved hypothetical protein compare
PP_0260 +0.5 2.6 ADP-sugar pyrophosphorylase compare
PP_0697 +0.5 3.5 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_2568 +0.5 1.2 Ring-cleaving dioxygenase compare
PP_5619 +0.5 2.1 protein of unknown function compare
PP_4018 +0.5 1.5 Acetyltransferase, GNAT family compare
PP_3726 +0.5 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_2857 +0.4 1.6 conserved exported protein of unknown function compare
PP_4941 +0.4 3.0 conserved exported protein of unknown function compare
PP_2511 +0.4 2.2 conserved protein of unknown function compare
PP_5256 +0.4 2.0 Cyclic nucleotide-binding protein compare
PP_1055 +0.4 1.1 Type II secretion pathway protein GspN compare
PP_0963 +0.4 1.7 putative BolA family protein compare
PP_5528 +0.4 1.5 conserved protein of unknown function compare
PP_5162 +0.4 3.0 conserved exported protein of unknown function compare
PP_4660 +0.4 2.4 Transcriptional regulator, LysR family compare
PP_0674 +0.4 3.5 ADP/ATP ratio sensor and inhibitor of translation compare
PP_0893 +0.4 2.1 ThiJ/PfpI family protein compare
PP_1066 +0.4 2.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4517 +0.4 1.2 conserved protein of unknown function compare
PP_4199 +0.4 0.8 putative Lipoprotein compare
PP_5727 +0.4 2.6 protein of unknown function compare
PP_2970 +0.4 1.7 conserved exported protein of unknown function compare
PP_2409 +0.4 1.6 cobalt-zinc-cadmium resistance protein compare
PP_3037 +0.4 1.2 C4-type zinc finger protein, DksA/TraR family compare
PP_1729 +0.4 1.3 conserved protein of unknown function compare
PP_1780 +0.4 4.0 putative mannosyltransferase compare
PP_5625 +0.4 2.3 conserved protein of unknown function compare
PP_2503 +0.4 1.9 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2054 +0.4 1.1 putative DNA-binding transcriptional regulator compare
PP_1788 +0.4 1.8 conserved protein of unknown function compare
PP_1087 +0.4 3.2 Outer membrane protein, OmpA family compare
PP_4958 +0.4 3.0 putative metal-dependent hydrolase compare
PP_5508 +0.4 0.9 conserved protein of unknown function compare
PP_2147 +0.4 2.1 conserved exported protein of unknown function compare
PP_2337 +0.4 1.3 aconitate isomerase compare
PP_4328 +0.4 1.2 conserved protein of unknown function compare
PP_3487 +0.4 1.7 conserved exported protein of unknown function compare
PP_2144 +0.4 2.0 Transcriptional regulator, TetR family compare
PP_5075 +0.4 3.3 glutamate synthase (NADPH) beta subunit compare
PP_5594 +0.4 1.6 conserved protein of unknown function compare
PP_1805 +0.4 3.7 Polysaccharide biosynthesis protein compare
PP_5597 +0.4 1.6 conserved protein of unknown function compare
PP_t12 +0.4 0.8 tRNA-Thr compare
PP_4385 +0.4 2.5 flagellar basal-body rod protein FlgG compare
PP_4690 +0.4 1.7 Rieske 2Fe-2S family protein compare
PP_0425 +0.4 1.9 conserved protein of unknown function compare
PP_4993 +0.4 1.8 Glutathione synthetase compare
PP_1761 +0.4 3.2 diguanylate cyclase with phosphodiesterase domain compare
PP_1554 +0.4 1.4 conserved protein of unknown function compare
PP_0743 +0.4 2.9 conserved protein with NAD(P)-binding Rossmann-fold domain compare
PP_2103 +0.4 2.1 conserved protein of unknown function compare
PP_5209 +0.4 2.7 conserved exported protein of unknown function compare
PP_3258 +0.4 1.5 conserved protein of unknown function compare
PP_4629 +0.4 1.7 Sensory box protein compare
PP_4265 +0.4 1.6 DNA-binding transcriptional dual regulator compare
PP_5430 +0.4 1.7 protein of unknown function compare
PP_1803 +0.4 3.1 UDP-sugar epimerase compare
PP_1930 +0.4 2.1 arsenic resistance transcriptional regulator compare
PP_4100 +0.4 2.0 Transcriptional regulator, Cro/CI family compare
PP_1004 +0.4 1.8 conserved protein of unknown function compare
PP_1802 +0.4 3.4 glycosyl transferase compare
PP_0434 +0.4 2.7 Anhydro-N-acetylmuramic acid kinase compare
PP_3473 +0.4 1.3 curli secretion and assembly outer membrane associated component compare
PP_5058 +0.4 2.0 Carboxy-terminal-processing protease compare
PP_0919 +0.4 1.4 conserved protein of unknown function compare
PP_2539 +0.4 2.2 Transcriptional regulator, LysR family compare
PP_5505 +0.3 1.1 conserved transmembrane protein of unknown function compare
PP_4905 +0.3 2.3 Flagellar motor rotation protein compare
PP_5675 +0.3 1.5 conserved protein of unknown function compare
PP_5084 +0.3 2.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4902 +0.3 1.0 Oligoribonuclease compare
PP_2848 +0.3 1.6 urease accessory protein compare
PP_3597 +0.3 1.4 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_1071 +0.3 2.2 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_0412 +0.3 2.3 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_4581 +0.3 1.0 putative amidotransferase compare
PP_0195 +0.3 1.2 conserved protein of unknown function compare
PP_5667 +0.3 1.6 putative microcin B17-like-processing protein, McbC family compare
PP_2648 +0.3 1.8 Universal stress protein family compare
PP_1053 +0.3 2.3 Type II secretion pathway protein XcpY compare
PP_2540 +0.3 1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2247 +0.3 1.7 putative Endoribonuclease compare
PP_4938 +0.3 2.5 putative Glycosyl transferase compare
PP_0725 +0.3 2.0 conserved hypothetical TPR repeat protein compare
PP_1918 +0.3 2.9 septation protein compare
PP_0232 +0.3 0.7 ATP-binding taurine transporter subunit compare
PP_2077 +0.3 1.5 diaminopimelate decarboxylase compare
PP_5428 +0.3 1.5 conserved exported protein of unknown function compare
PP_3580 +0.3 0.9 conserved protein of unknown function compare
PP_2847 +0.3 0.9 Urease accessory protein UreJ compare
PP_1903 +0.3 1.5 putative phosphotyrosine-protein phosphatase compare
PP_5194 +0.3 2.4 aminomethyltransferase compare
PP_4054 +0.3 1.2 conserved protein of unknown function compare
PP_2880 +0.3 1.0 Transcriptional regulator, TetR family compare
PP_2332 +0.3 2.0 conserved exported protein of unknown function compare
PP_1804 +0.3 2.5 Glycosyl transferase WbpL compare
PP_4710 +0.3 2.6 tRNA pseudouridine 55 synthase compare
PP_2309 +0.3 0.7 conserved protein of unknown function compare
PP_1269 +0.3 0.7 Universal stress protein family compare
PP_4616 +0.3 1.5 conserved protein of unknown function compare
PP_1561 +0.3 1.8 putative Phage holin compare
PP_2219 +0.3 1.5 conserved protein of unknown function compare
PP_0957 +0.3 0.9 D-arabinose 5-phosphate isomerase compare
PP_4173 +0.3 2.0 Sensor histidine kinase/response regulator compare
PP_5143 +0.3 1.2 conserved membrane protein of unknown function compare
PP_2176 +0.3 1.9 transcriptional regulator, LysR family compare
PP_3117 +0.3 1.3 putative protein involved in error-prone processing of DNA lesions compare
PP_0088 +0.3 2.2 putative alkanal monooxygenase compare
PP_1226 +0.3 1.4 pre-queuosine 0 synthase compare
PP_4015 +0.3 1.6 HflD-like high frequency lysogenization protein compare
PP_3617 +0.3 1.8 conserved membrane protein of unknown function compare
PP_3574 +0.3 2.0 conserved protein of unknown function compare
PP_2306 +0.3 0.8 conserved exported protein of unknown function compare
PP_3061 +0.3 1.6 conserved protein of unknown function compare
PP_5488 +0.3 1.7 conserved protein of unknown function compare
PP_5311 +0.3 2.4 putative signal transduction protein compare
PP_2559 +0.3 1.6 Metalloprotease secretion protein compare
PP_0640 +0.3 1.0 conserved protein of unknown function compare
PP_3964 +0.3 1.9 transposase compare
PP_4540 +0.3 1.8 Hydrolase, alpha/beta fold family compare
PP_5070 +0.3 1.9 ParA family protein compare
PP_4792 +0.3 0.8 conserved exported protein of unknown function compare
PP_2189 +0.3 0.9 conserved protein of unknown function compare
PP_0215 +0.3 2.2 Response regulator compare
PP_4029 +0.3 2.0 NADH pyrophosphatase compare
PP_3017 +0.3 1.7 O6-methylguanine-DNA methyltransferase compare
PP_0405 +0.3 2.6 conserved protein of unknown function compare
PP_5496 +0.3 1.3 conserved exported protein of unknown function compare
PP_4246 +0.3 2.3 Periplasmic binding protein compare
PP_2633 +0.3 0.5 conserved protein of unknown function compare
PP_5515 +0.3 1.9 protein of unknown function compare
PP_4625 +0.3 1.3 anti-holin regulator of holin CidA compare
PP_4670 +0.3 2.2 diguanylate cyclase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source 1,3-Butandiol in Pseudomonas putida KT2440

For carbon source 1,3-Butandiol across organisms