Experiment set16IT005 for Pseudomonas putida KT2440

Compare to:

Butanol carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.7 -8.0 Indole-3-glycerol phosphate synthase compare
PP_0290 -6.1 -8.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5659 -5.3 -5.4 protein of unknown function compare
PP_5014 -5.2 -6.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1985 -5.1 -8.5 3-isopropylmalate dehydratase large subunit compare
PP_0083 -5.0 -6.9 tryptophan synthase beta chain compare
PP_0967 -4.9 -14.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -4.8 -14.4 Histidinol dehydrogenase compare
PP_3511 -4.8 -11.4 Branched-chain-amino-acid aminotransferase compare
PP_5095 -4.8 -3.3 pyrroline-5-carboxylate reductase compare
PP_0293 -4.7 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -4.7 -9.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4723 -4.7 -18.9 Carbamoyl-phosphate synthase large chain compare
PP_0691 -4.6 -7.0 Glutamate 5-kinase compare
PP_4680 -4.6 -18.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -4.6 -8.8 Argininosuccinate lyase compare
PP_4679 -4.6 -10.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.6 -20.1 Ketol-acid reductoisomerase compare
PP_4696 -4.6 -8.2 Nitrogen regulation protein NR(I) compare
PP_0289 -4.5 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5289 -4.5 -7.4 Acetylglutamate kinase compare
PP_1088 -4.4 -14.9 Argininosuccinate synthase compare
PP_4724 -4.2 -9.4 Carbamoyl-phosphate synthase small chain compare
PP_0417 -4.1 -20.8 Anthranilate synthase component 1 compare
PP_1995 -4.1 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -4.0 -8.0 tryptophan synthase alpha chain compare
PP_5097 -3.9 -16.2 homoserine O-acetyltransferase compare
PP_1988 -3.9 -12.7 3-isopropylmalate dehydrogenase compare
PP_0420 -3.8 -14.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5098 -3.8 -11.1 methionine biosynthesis protein MetW compare
PP_0356 -3.7 -11.8 malate synthase G compare
PP_1079 -3.7 -7.6 Ornithine carbamoyltransferase compare
PP_1986 -3.6 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_4116 -3.6 -13.8 isocitrate lyase compare
PP_1025 -3.6 -14.8 2-isopropylmalate synthase compare
PP_4364 -3.6 -7.3 putative Anti-sigma F factor antagonist compare
PP_4890 -3.6 -9.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -3.5 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -3.5 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4999 -3.4 -4.0 dihydroorotase-like protein compare
PP_0421 -3.4 -7.8 Anthranilate phosphoribosyltransferase compare
PP_2001 -3.4 -12.9 O-succinylhomoserine sulfhydrylase compare
PP_4909 -3.3 -12.0 phosphoserine phosphatase compare
PP_4700 -3.3 -4.4 pantothenate synthetase compare
PP_5217 -3.2 -20.1 Polyphosphate kinase compare
PP_5128 -3.1 -7.7 Dihydroxy-acid dehydratase compare
PP_3553 -2.9 -14.1 AMP-binding domain protein compare
PP_0292 -2.7 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2371 -2.7 -8.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5347 -2.7 -14.3 pyruvate carboxylase subunit A compare
PP_0291 -2.6 -3.8 conserved protein of unknown function compare
PP_2370 -2.5 -4.9 conserved protein of unknown function compare
PP_3554 -2.5 -16.3 Acyl-CoA dehydrogenase family protein compare
PP_3551 -2.4 -3.5 DNA-binding response regulator, LuxR family compare
PP_4699 -2.3 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4693 -2.3 -6.3 RNA polymerase-binding transcription factor DksA compare
PP_5348 -2.3 -10.7 Transcriptional regulator, LysR family compare
PP_0787 -2.3 -7.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1656 -2.2 -8.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1110 -2.2 -5.6 serine acetyltransferase compare
PP_3754 -2.2 -8.8 Beta-ketothiolase BktB compare
PP_1654 -2.2 -4.6 cysteine synthase B compare
PP_1109 -2.2 -14.1 Transcriptional regulator, GntR family compare
PP_3999 -2.1 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -2.1 -5.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2327 -2.1 -8.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0393 -2.0 -2.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3755 -1.9 -8.9 3-hydroxybutyryl-CoA dehydrogenase compare
PP_1231 -1.9 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1826 -1.9 -3.1 Hydrolase, isochorismatase family compare
PP_5346 -1.9 -11.2 pyruvate carboxylase subunit B compare
PP_3756 -1.8 -6.8 TetR family transcriptional regulator compare
PP_4695 -1.8 -6.8 Sensory box histidine kinase compare
PP_3753 -1.7 -6.6 Transcriptional regulator, AraC family compare
PP_0164 -1.6 -7.7 conserved protein of unknown function compare
PP_1111 -1.6 -5.1 putative Synthetase compare
PP_5085 -1.6 -6.9 malic enzyme B compare
PP_3552 -1.6 -9.2 Sensory box histidine kinase compare
PP_0368 -1.5 -9.9 putative Acyl-CoA dehydrogenase compare
PP_3946 -1.5 -2.5 HTH-type transcriptional repressor NicR compare
PP_2136 -1.5 -5.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2388 -1.4 -3.9 Transporter, LysE family compare
PP_2390 -1.4 -5.9 Transcriptional regulator, LysR family compare
PP_1215 -1.4 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0833 -1.4 -2.5 queuine tRNA-ribosyltransferase compare
PP_0719 -1.3 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1655 -1.3 -3.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4895 -1.3 -3.7 tRNA dimethylallyltransferase compare
PP_1764 -1.3 -7.0 Phosphoglycolate phosphatase 2 compare
PP_2217 -1.3 -4.4 enoyl-CoA hydratase compare
PP_0381 -1.3 -7.3 Coenzyme PQQ synthesis protein F compare
PP_1428 -1.2 -2.2 Sigma factor AlgU negative regulatory protein compare
PP_2328 -1.2 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_2820 -1.1 -2.2 HTH-type transcriptional regulator nfxB compare
PP_2414 -1.1 -1.5 conserved exported protein of unknown function compare
PP_1734 -1.1 -2.8 Probable septum site-determining protein MinC compare
PP_5303 -1.1 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2137 -1.1 -2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_5017 -1.1 -1.8 Sec-independent protein translocase protein TatB compare
PP_4126 -1.1 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_4131 -1.1 -5.3 NADH-quinone oxidoreductase subunit N compare
PP_5227 -1.1 -5.5 diaminopimelate decarboxylase compare
PP_3484 -1.1 -4.6 Response regulator receiver protein compare
PP_4121 -1.1 -4.8 NADH-quinone oxidoreductase subunit C/D compare
PP_0513 -1.1 -3.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4565 -1.1 -8.3 Isocitrate dehydrogenase kinase/phosphatase compare
PP_1493 -1.0 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4964 -1.0 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4481 -1.0 -5.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1912 -1.0 -4.9 Phosphate acyltransferase compare
PP_3603 -1.0 -6.0 Transcriptional regulator, GntR family compare
PP_4124 -1.0 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_0122 -1.0 -3.5 conserved exported protein of unknown function compare
PP_3359 -0.9 -2.7 putative Hydroxycinnamic acid degradation regulator compare
PP_5035 -0.9 -4.3 Histidine utilization repressor compare
PP_2675 -0.9 -3.8 Cytochrome c-type protein compare
PP_4828 -0.9 -1.7 Precorrin-8X methylmutase compare
PP_0339 -0.9 -3.6 Pyruvate dehydrogenase E1 component compare
PP_0232 -0.9 -1.6 ATP-binding taurine transporter subunit compare
PP_1217 -0.9 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1468 -0.9 -2.8 Tyrosine recombinase XerD compare
PP_0248 -0.9 -7.2 Probable alpha-L-glutamate ligase compare
PP_1713 -0.9 -2.7 Transcriptional regulator PcaQ compare
PP_1589 -0.9 -6.3 uridylyltransferase compare
PP_1233 -0.9 -4.6 sulfurtransferase compare
PP_2389 -0.8 -3.1 conserved protein of unknown function compare
PP_1076 -0.8 -4.3 aquaglyceroporin compare
PP_0435 -0.8 -6.9 Peptidase, M23/M37 family compare
PP_4988 -0.8 -3.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4129 -0.8 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4120 -0.8 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_4480 -0.8 -5.6 arginine N-succinyltransferase, subunit alpha compare
PP_1664 -0.8 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1075 -0.8 -5.8 glycerol kinase compare
PP_1994 -0.8 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_0364 -0.8 -5.5 pimeloyl-[acp] methyl ester esterase compare
PP_3098 -0.8 -1.4 conserved protein of unknown function compare
PP_1629 -0.8 -3.8 Protein RecA compare
PP_2196 -0.7 -2.4 agmatinase compare
PP_1353 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_4004 -0.7 -2.4 DNA translocase FtsK compare
PP_2433 -0.7 -2.6 conserved protein of unknown function compare
PP_0379 -0.7 -3.5 Coenzyme PQQ synthesis protein B compare
PP_2665 -0.7 -3.3 Glycerol metabolism activator compare
PP_3903 -0.7 -2.1 conserved protein of unknown function compare
PP_4984 -0.7 -5.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3286 -0.7 -4.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0117 -0.7 -3.8 Zn(2+) ABC transporter - permease subunit compare
PP_2302 -0.7 -3.7 DNA-binding, ATP-dependent protease compare
PP_2868 -0.7 -4.1 Transcriptional regulator, Cro/CI family compare
PP_0673 -0.7 -2.1 conserved protein of unknown function compare
PP_1237 -0.7 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4832 -0.7 -3.5 Precorrin-6x reductase compare
PP_0362 -0.7 -5.5 Biotin synthase compare
PP_0484 -0.7 -4.2 transporter of an unknown substrate compare
PP_0846 -0.7 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_0376 -0.6 -4.7 Coenzyme PQQ synthesis protein E compare
PP_5198 -0.6 -2.4 conserved protein of unknown function compare
PP_1164 -0.6 -1.2 Transcriptional regulator, LysR family compare
PP_4874 -0.6 -0.9 50S ribosomal protein L9 compare
PP_0989 -0.6 -2.4 glycine cleavage system H protein 1 compare
PP_4271 -0.6 -1.2 conserved protein of unknown function compare
PP_0182 -0.6 -3.0 conserved protein of unknown function compare
PP_3035 -0.6 -1.9 conserved protein of unknown function compare
PP_5230 -0.6 -2.5 Tyrosine recombinase XerC compare
PP_5104 -0.6 -4.3 thiazole synthase compare
PP_3506 -0.6 -2.2 Magnesium chelatase, subunit ChII compare
PP_0003 -0.6 -2.4 16S RNA methyltransferase compare
PP_3105 -0.6 -1.6 conserved membrane protein of unknown function compare
PP_2031 -0.6 -1.8 conserved protein of unknown function compare
PP_1293 -0.6 -1.4 molybdopterin synthase small subunit compare
PP_2929 -0.6 -4.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0063 -0.6 -2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0127 -0.6 -3.3 Thiol:disulfide interchange protein compare
PP_4902 -0.6 -1.3 Oligoribonuclease compare
PP_5538 -0.6 -3.1 putative ABC transporter, substrate-binding protein compare
PP_4317 -0.6 -2.3 conserved protein of unknown function compare
PP_2402 -0.6 -1.5 putative Sensor histidine kinase compare
PP_5427 -0.6 -3.5 conserved exported protein of unknown function compare
PP_1099 -0.6 -2.0 Cold shock protein CapB compare
PP_5007 -0.6 -1.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0366 -0.6 -3.8 dethiobiotin synthetase compare
PP_5610 -0.6 -1.5 protein of unknown function compare
PP_5310 -0.6 -2.6 junction-specific ATP-dependent DNA helicase compare
PP_2123 -0.6 -3.6 molybdenum::molybdopterin ligase compare
PP_1678 -0.6 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2928 -0.6 -4.0 Saccharopine dehydrogenase compare
PP_0593 -0.6 -0.9 putative ribosome-binding factor compare
PP_3102 -0.6 -2.1 conserved protein of unknown function compare
PP_1677 -0.6 -3.3 Adenosyl-cobyric acid synthase compare
PP_4738 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4320 -0.6 -3.5 cytochrome c-type biogenesis protein compare
PP_3398 -0.6 -1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5582 -0.5 -1.4 conserved protein of unknown function compare
PP_0879 -0.5 -3.2 dipeptide ABC transporter - putative ATP binding subunit compare
PP_3839 -0.5 -3.7 short-chain alcohol dehydrogenase compare
PP_2683 -0.5 -3.0 putative sensory box histidine kinase/response regulator compare
PP_4363 -0.5 -4.1 Sensor histidine kinase/response regulator compare
PP_0888 -0.5 -1.4 Photosynthetic apparatus regulatory protein RegA compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Butanol in Pseudomonas putida KT2440

For carbon source Butanol across organisms