Experiment set16IT005 for Pseudomonas putida KT2440

Compare to:

Butanol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0022 +1.1 3.0 hypothetical protein compare
PP_4942 +0.9 2.7 conserved protein of unknown function compare
PP_2387 +0.9 3.4 conserved protein of unknown function compare
PP_5093 +0.8 1.5 twitching motility protein compare
PP_1041 +0.8 2.5 twin arginine protein export complex subunit compare
PP_0048 +0.8 1.9 conserved protein of unknown function compare
PP_1623 +0.7 5.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_0547 +0.7 4.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1650 +0.7 6.8 Sensor protein GacS compare
PP_4171 +0.7 5.8 conserved exported protein of unknown function compare
PP_4099 +0.7 6.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2857 +0.6 1.5 conserved exported protein of unknown function compare
PP_2747 +0.6 2.3 conserved protein of unknown function compare
PP_3904 +0.6 3.1 conserved protein of unknown function compare
PP_3447 +0.6 1.4 conserved membrane protein of unknown function compare
PP_2847 +0.6 1.6 Urease accessory protein UreJ compare
PP_4944 +0.6 2.5 Carbamoyltransferase compare
PP_1038 +0.5 2.3 conserved protein of unknown function compare
PP_4785 +0.5 3.7 conserved exported protein of unknown function compare
PP_4561 +0.5 1.0 stress response protein compare
PP_4199 +0.5 1.0 putative Lipoprotein compare
PP_5053 +0.5 2.8 Protein-export protein SecB compare
PP_4054 +0.5 1.4 conserved protein of unknown function compare
PP_0168 +0.5 4.9 putative surface adhesion protein compare
PP_4373 +0.5 4.6 Transcriptional regulator FleQ compare
PP_0959 +0.5 2.0 phospholipid ABC transporter compare
PP_4449 +0.5 2.7 conserved protein of unknown function compare
PP_2309 +0.5 1.1 conserved protein of unknown function compare
PP_1113 +0.5 3.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0195 +0.5 2.1 conserved protein of unknown function compare
PP_0963 +0.5 2.1 putative BolA family protein compare
PP_1381 +0.5 1.2 4-carboxymuconolactone decarboxylase compare
PP_1066 +0.5 2.5 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1778 +0.5 2.2 Lipopolysaccharide ABC export system, permease protein compare
PP_3074 +0.5 2.4 D-beta-hydroxybutyrate permease compare
PP_2848 +0.5 2.0 urease accessory protein compare
PP_0516 +0.5 2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_5548 +0.4 1.5 protein of unknown function compare
PP_3040 +0.4 2.2 Pyocin R2_PP, holin compare
PP_2077 +0.4 2.7 diaminopimelate decarboxylase compare
PP_2341 +0.4 1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5698 +0.4 2.3 conserved exported protein of unknown function compare
PP_4792 +0.4 1.9 conserved exported protein of unknown function compare
PP_3770 +0.4 1.3 conserved protein of unknown function compare
PP_3524 +0.4 1.9 conserved protein of unknown function compare
PP_0274 +0.4 1.4 putative transcriptional regulator containing HTH domain compare
PP_2648 +0.4 2.1 Universal stress protein family compare
PP_2760 +0.4 2.6 putative ribose transport permease protein compare
PP_1824 +0.4 1.1 Smr domain protein compare
PP_2499 +0.4 1.0 conserved protein of unknown function compare
PP_0919 +0.4 2.1 conserved protein of unknown function compare
PP_0565 +0.4 2.2 putative enzyme compare
PP_0137 +0.4 3.1 glutamate/aspartate-proton DAACS transporter compare
PP_0167 +0.4 3.7 Toxin secretion ATP-binding protein compare
PP_2765 +0.4 1.3 putative Sulfonate monooxygenase MsuD compare
PP_5052 +0.4 1.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_4892 +0.4 2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2813 +0.4 1.8 BNR domain protein compare
PP_0166 +0.4 3.5 HlyD family secretion protein compare
PP_5175 +0.4 2.3 HlyD family secretion protein compare
PP_0508 +0.4 1.9 conserved exported protein of unknown function compare
PP_3532 +0.4 1.3 Transcriptional regulator, AsnC family compare
PP_1269 +0.4 0.9 Universal stress protein family compare
PP_1325 +0.4 2.5 putative lipoprotein compare
PP_0138 +0.4 2.6 conserved membrane protein of unknown function compare
PP_4938 +0.4 2.8 putative Glycosyl transferase compare
PP_4519 +0.4 3.5 Agglutination protein compare
PP_0839 +0.4 1.4 tRNA Cm32/Um32 methyltransferase compare
PP_3332 +0.4 1.1 putative cytochrome c-type protein compare
PP_4787 +0.4 1.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4916 +0.4 2.0 putative esterase compare
PP_3227 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_4133 +0.4 1.4 Transcriptional regulator-related protein compare
PP_3312 +0.4 0.9 putative Heat shock protein compare
PP_2764 +0.4 1.3 FMN reductase (NADPH) compare
PP_3580 +0.4 0.8 conserved protein of unknown function compare
PP_5471 +0.4 1.4 putative response regulator receiver protein compare
PP_4820 +0.4 2.5 tRNA-dihydrouridine synthase B compare
PP_2215 +0.4 1.5 acetyl-CoA acetyltransferase compare
PP_0900 +0.4 1.4 PAP2 family protein compare
PP_3715 +0.4 1.5 Muconate cycloisomerase 1 compare
PP_0512 +0.4 1.1 hypothetical protein compare
PP_5597 +0.4 1.5 conserved protein of unknown function compare
PP_3258 +0.4 1.6 conserved protein of unknown function compare
PP_4143 +0.4 2.1 conserved protein of unknown function compare
PP_1779 +0.4 2.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4786 +0.4 1.9 conserved protein of unknown function compare
PP_4943 +0.4 1.0 putative Glycosyl transferase compare
PP_2189 +0.4 1.3 conserved protein of unknown function compare
PP_3682 +0.3 1.5 conserved protein of unknown function compare
PP_0152 +0.3 1.4 conserved exported protein of unknown function compare
PP_1190 +0.3 1.9 conserved protein of unknown function compare
PP_0319 +0.3 1.1 conserved protein of unknown function compare
PP_5727 +0.3 2.2 protein of unknown function compare
PP_3714 +0.3 2.3 Muconolactone Delta-isomerase compare
PP_4627 +0.3 1.9 transcriptional regulator, LysR family compare
PP_1390 +0.3 1.4 conserved exported protein of unknown function compare
PP_2121 +0.3 1.2 putative Lipoprotein compare
PP_0781 +0.3 1.9 conserved protein of unknown function compare
PP_4803 +0.3 2.7 D-alanyl-D-alanine carboxypeptidase compare
PP_5490 +0.3 1.8 site-specific DNA recombinase compare
PP_3509 +0.3 1.3 Glyoxalase family protein compare
PP_3244 +0.3 1.8 Magnesium transporter, MgtC family compare
PP_3290 +0.3 2.3 Universal stress protein family compare
PP_4941 +0.3 2.5 conserved exported protein of unknown function compare
PP_3831 +0.3 2.5 conserved protein of unknown function compare
PP_1999 +0.3 1.3 membrane protein required for colicin V production compare
PP_2070 +0.3 1.2 Transcriptional regulator, AraC family compare
PP_2207 +0.3 1.4 conserved membrane protein of unknown function compare
PP_4690 +0.3 1.3 Rieske 2Fe-2S family protein compare
PP_4982 +0.3 1.5 putative cytochrome b561, iron-regulated compare
PP_3732 +0.3 1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_5546 +0.3 0.7 conserved protein of unknown function compare
PP_3773 +0.3 1.4 conserved protein of unknown function compare
PP_2280 +0.3 1.3 conserved protein of unknown function compare
PP_1609 +0.3 1.5 conserved protein of unknown function compare
PP_2582 +0.3 1.7 putative Heme oxygenase compare
PP_0594 +0.3 2.6 Transcriptional regulator, TetR family compare
PP_4566 +0.3 2.3 putative drug/metabolite transporter compare
PP_3662 +0.3 2.2 conserved protein of unknown function compare
PP_4768 +0.3 1.7 Exonuclease compare
PP_3239 +0.3 1.4 putative cointegrate resolution protein T Tn4652 compare
PP_4367 +0.3 1.5 Flagellar assembly protein FliH compare
PP_2880 +0.3 0.9 Transcriptional regulator, TetR family compare
PP_3880 +0.3 1.0 conserved exported protein of unknown function compare
PP_4994 +0.3 1.9 conserved protein of unknown function compare
PP_2409 +0.3 1.6 cobalt-zinc-cadmium resistance protein compare
PP_1005 +0.3 1.7 Heme oxygenase compare
PP_0240 +0.3 1.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1245 +0.3 2.3 conserved exported protein of unknown function compare
PP_3806 +0.3 1.5 Hydrolase, isochorismatase family compare
PP_3073 +0.3 1.4 3-hydroxybutyrate dehydrogenase compare
PP_1067 +0.3 2.7 Sensor histidine kinase compare
PP_t29 +0.3 1.0 tRNA-Ala compare
PP_2383 +0.3 1.6 Transcriptional regulator, AraC family compare
PP_5390 +0.3 1.2 conserved hypothetical protein compare
PP_3323 +0.3 1.3 CobW/P47K family protein compare
PP_0165 +0.3 2.8 GGDEF domain protein compare
PP_1439 +0.3 1.0 conserved exported protein of unknown function compare
PP_3710 +0.3 2.2 conserved protein of unknown function compare
PP_4340 +0.3 1.1 response regulator for chemotactic signal transduction compare
PP_5453 +0.3 0.9 conserved protein of unknown function compare
PP_3782 +0.3 1.7 conserved protein of unknown function compare
PP_3285 +0.3 1.5 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_3378 +0.3 0.9 putative 2-ketogluconokinase compare
PP_5042 +0.3 1.8 conserved protein of unknown function compare
PP_3824 +0.3 1.0 conserved exported protein of unknown function compare
PP_3487 +0.3 1.4 conserved exported protein of unknown function compare
PP_1575 +0.3 0.9 conserved protein of unknown function compare
PP_3480 +0.3 1.2 conserved protein of unknown function compare
PP_5200 +0.3 2.2 proline aminopeptidase P II compare
PP_2026 +0.3 1.6 conserved protein of unknown function compare
PP_3488 +0.3 1.8 Sco1/SenC family protein compare
PP_0357 +0.3 1.8 ACT domain protein compare
PP_4804 +0.3 1.1 RlpA-like lipoprotein compare
PP_3307 +0.3 0.9 conserved protein of unknown function compare
PP_5666 +0.3 1.5 putative microcin B17-like processing protein, McbB family compare
PP_5495 +0.3 1.2 protein of unknown function compare
PP_2723 +0.3 1.7 Uncharacterized oxidoreductase YhdF compare
PP_0771 +0.3 1.9 mRNA interferase compare
PP_3617 +0.3 1.8 conserved membrane protein of unknown function compare
PP_1776 +0.3 2.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1981 +0.3 1.6 tRNA-dihydrouridine synthase C compare
PP_2660 +0.3 2.3 conserved protein of unknown function compare
PP_2898 +0.3 1.2 conserved exported protein of unknown function compare
PP_5317 +0.3 1.0 Probable chorismate pyruvate-lyase compare
PP_1235 +0.3 1.8 AhpC/TSA family protein compare
PP_3052 +0.3 0.6 conserved protein of unknown function compare
PP_1291 +0.3 2.0 PhoH family protein compare
PP_2192 +0.3 1.6 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_3563 +0.3 1.6 conserved exported protein of unknown function compare
PP_2622 +0.3 1.1 conserved protein of unknown function compare
PP_2889 +0.3 1.9 putative Transmembrane regulator PrtR compare
PP_3835 +0.3 1.5 Sensory box histidine kinase compare
PP_1536 +0.3 1.0 conserved protein of unknown function compare
PP_1504 +0.3 1.9 conserved protein of unknown function compare
PP_2332 +0.3 1.6 conserved exported protein of unknown function compare
PP_4435 +0.3 1.1 conserved protein of unknown function compare
PP_4560 +0.3 1.5 putative Ribonuclease BN compare
PP_5557 +0.3 1.1 protein of unknown function compare
PP_0755 +0.3 1.5 conserved protein of unknown function compare
PP_0944 +0.3 2.1 fumarate hydratase (class 2) compare
PP_3900 +0.3 1.8 hypothetical protein compare
PP_4981 +0.3 1.1 polyisoprene-binding protein, acidic stress response factor compare
PP_0305 +0.3 1.4 HTH-type transcriptional regulator CdhR compare
PP_5337 +0.3 1.5 LysR family transcriptional regulator compare
PP_4940 +0.3 1.6 Putative glycosyltransferase compare
PP_3243 +0.3 1.1 Acetyltransferase, GNAT family compare
PP_2722 +0.3 1.2 conserved protein of unknown function compare
PP_0416 +0.3 1.6 Phosphoglycolate phosphatase compare
PP_1930 +0.3 1.3 arsenic resistance transcriptional regulator compare
PP_4893 +0.3 2.0 GTPase HflX compare
PP_5496 +0.3 1.3 conserved exported protein of unknown function compare
PP_2766 +0.3 1.4 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_3020 +0.3 1.3 putative Serine/threonine protein phosphatase compare
PP_3859 +0.3 1.4 conserved protein of unknown function compare
PP_1317 +0.3 1.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2858 +0.3 1.3 conserved exported protein of unknown function compare
PP_1466 +0.3 1.4 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2526 +0.3 0.9 conserved membrane protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Butanol in Pseudomonas putida KT2440

For carbon source Butanol across organisms