Experiment set16IT004 for Pseudomonas putida KT2440

Compare to:

Butanol carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5014 -6.2 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0967 -5.8 -13.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4364 -5.6 -7.7 putative Anti-sigma F factor antagonist compare
PP_0083 -5.5 -5.4 tryptophan synthase beta chain compare
PP_0184 -5.5 -6.5 Argininosuccinate lyase compare
PP_0691 -5.4 -6.4 Glutamate 5-kinase compare
PP_0290 -5.2 -10.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -5.1 -6.1 tryptophan synthase alpha chain compare
PP_0164 -5.1 -9.8 conserved protein of unknown function compare
PP_0422 -4.9 -8.9 Indole-3-glycerol phosphate synthase compare
PP_4723 -4.9 -18.2 Carbamoyl-phosphate synthase large chain compare
PP_0417 -4.9 -22.5 Anthranilate synthase component 1 compare
PP_4679 -4.8 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.8 -13.5 Argininosuccinate synthase compare
PP_5095 -4.7 -3.2 pyrroline-5-carboxylate reductase compare
PP_4678 -4.6 -17.7 Ketol-acid reductoisomerase compare
PP_0289 -4.6 -11.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1995 -4.6 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4890 -4.6 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -4.5 -14.4 Histidinol dehydrogenase compare
PP_4680 -4.5 -17.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -4.5 -8.0 Nitrogen regulation protein NR(I) compare
PP_4799 -4.4 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4724 -4.4 -9.8 Carbamoyl-phosphate synthase small chain compare
PP_4116 -4.4 -15.5 isocitrate lyase compare
PP_0356 -4.4 -12.5 malate synthase G compare
PP_1986 -4.2 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_5097 -4.2 -16.4 homoserine O-acetyltransferase compare
PP_1985 -4.2 -8.4 3-isopropylmalate dehydratase large subunit compare
PP_5098 -4.2 -10.1 methionine biosynthesis protein MetW compare
PP_5015 -4.2 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -4.1 -13.6 Branched-chain-amino-acid aminotransferase compare
PP_5128 -4.1 -8.6 Dihydroxy-acid dehydratase compare
PP_5185 -4.1 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1988 -4.1 -10.9 3-isopropylmalate dehydrogenase compare
PP_5289 -3.9 -7.0 Acetylglutamate kinase compare
PP_2001 -3.9 -11.8 O-succinylhomoserine sulfhydrylase compare
PP_1025 -3.9 -12.5 2-isopropylmalate synthase compare
PP_0421 -3.9 -8.0 Anthranilate phosphoribosyltransferase compare
PP_4700 -3.8 -2.6 pantothenate synthetase compare
PP_0965 -3.7 -10.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4909 -3.6 -10.7 phosphoserine phosphatase compare
PP_0292 -3.6 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3484 -3.6 -7.7 Response regulator receiver protein compare
PP_0420 -3.5 -12.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5659 -3.5 -4.9 protein of unknown function compare
PP_1079 -3.4 -7.9 Ornithine carbamoyltransferase compare
PP_5217 -3.4 -20.4 Polyphosphate kinase compare
PP_3999 -3.3 -11.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -3.2 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0291 -3.1 -3.4 conserved protein of unknown function compare
PP_1654 -3.0 -5.0 cysteine synthase B compare
PP_3553 -2.9 -13.2 AMP-binding domain protein compare
PP_5155 -2.9 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -2.8 -3.7 dihydroorotase-like protein compare
PP_5347 -2.6 -13.6 pyruvate carboxylase subunit A compare
PP_2370 -2.6 -4.1 conserved protein of unknown function compare
PP_4693 -2.5 -6.2 RNA polymerase-binding transcription factor DksA compare
PP_3755 -2.4 -10.3 3-hydroxybutyryl-CoA dehydrogenase compare
PP_3554 -2.4 -17.1 Acyl-CoA dehydrogenase family protein compare
PP_0787 -2.4 -7.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1656 -2.3 -7.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_0393 -2.3 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1231 -2.3 -8.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3754 -2.2 -7.1 Beta-ketothiolase BktB compare
PP_5346 -2.2 -9.9 pyruvate carboxylase subunit B compare
PP_1826 -2.2 -3.7 Hydrolase, isochorismatase family compare
PP_2327 -2.1 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5348 -2.1 -11.0 Transcriptional regulator, LysR family compare
PP_4874 -2.1 -2.4 50S ribosomal protein L9 compare
PP_0833 -2.1 -2.9 queuine tRNA-ribosyltransferase compare
PP_3753 -2.0 -6.5 Transcriptional regulator, AraC family compare
PP_1109 -2.0 -12.6 Transcriptional regulator, GntR family compare
PP_1110 -2.0 -2.4 serine acetyltransferase compare
PP_4699 -1.9 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5085 -1.9 -7.6 malic enzyme B compare
PP_3551 -1.8 -2.4 DNA-binding response regulator, LuxR family compare
PP_4695 -1.8 -7.2 Sensory box histidine kinase compare
PP_1493 -1.8 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1468 -1.8 -3.5 Tyrosine recombinase XerD compare
PP_2414 -1.8 -1.2 conserved exported protein of unknown function compare
PP_1111 -1.8 -6.8 putative Synthetase compare
PP_0381 -1.7 -7.9 Coenzyme PQQ synthesis protein F compare
PP_2328 -1.7 -6.5 Phosphoadenosine phosphosulfate reductase compare
PP_4120 -1.7 -4.6 NADH-quinone oxidoreductase subunit B compare
PP_3552 -1.6 -9.9 Sensory box histidine kinase compare
PP_3756 -1.6 -7.5 TetR family transcriptional regulator compare
PP_4004 -1.6 -4.4 DNA translocase FtsK compare
PP_2217 -1.6 -4.3 enoyl-CoA hydratase compare
PP_5303 -1.6 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1734 -1.6 -3.7 Probable septum site-determining protein MinC compare
PP_2136 -1.5 -5.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3821 -1.5 -9.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1215 -1.4 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4964 -1.4 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0368 -1.4 -8.9 putative Acyl-CoA dehydrogenase compare
PP_1733 -1.4 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_3649 -1.4 -3.5 Transcriptional regulator, GntR family compare
PP_1994 -1.4 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_2390 -1.3 -7.8 Transcriptional regulator, LysR family compare
PP_4923 -1.3 -8.5 Outer membrane efflux protein compare
PP_2388 -1.3 -4.4 Transporter, LysE family compare
PP_1655 -1.2 -3.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5114 -1.2 -2.1 putative adenine methyltransferase compare
PP_2137 -1.2 -2.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_4565 -1.2 -9.3 Isocitrate dehydrogenase kinase/phosphatase compare
PP_1783 -1.2 -2.4 dTDP-glucose pyrophosphorylase compare
PP_0377 -1.2 -2.7 coenzyme PQQ synthesis protein D compare
PP_1216 -1.2 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4121 -1.1 -5.0 NADH-quinone oxidoreductase subunit C/D compare
PP_4895 -1.1 -3.3 tRNA dimethylallyltransferase compare
PP_0435 -1.1 -9.4 Peptidase, M23/M37 family compare
PP_4131 -1.1 -5.3 NADH-quinone oxidoreductase subunit N compare
PP_5035 -1.1 -5.9 Histidine utilization repressor compare
PP_0406 -1.1 -5.3 Nucleotidyltransferase family protein compare
PP_1217 -1.1 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1764 -1.1 -5.4 Phosphoglycolate phosphatase 2 compare
PP_0888 -1.0 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_5227 -1.0 -5.9 diaminopimelate decarboxylase compare
PP_3603 -1.0 -6.1 Transcriptional regulator, GntR family compare
PP_4124 -1.0 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_4268 -1.0 -2.2 nucleoid-associated broad specificity regulator compare
PP_4943 -1.0 -1.9 putative Glycosyl transferase compare
PP_4130 -1.0 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1664 -1.0 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_5054 -1.0 -2.1 glutaredoxin 3 compare
PP_2000 -0.9 -1.5 amidophosphoribosyl transferase compare
PP_1233 -0.9 -4.7 sulfurtransferase compare
PP_0376 -0.9 -6.4 Coenzyme PQQ synthesis protein E compare
PP_0127 -0.9 -4.3 Thiol:disulfide interchange protein compare
PP_0248 -0.9 -6.2 Probable alpha-L-glutamate ligase compare
PP_1589 -0.9 -6.0 uridylyltransferase compare
PP_2820 -0.9 -1.5 HTH-type transcriptional regulator nfxB compare
PP_4126 -0.9 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4296 -0.9 -1.8 conserved exported protein of unknown function compare
PP_0846 -0.9 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_4129 -0.9 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2868 -0.9 -4.4 Transcriptional regulator, Cro/CI family compare
PP_4782 -0.9 -4.5 Phosphomethylpyrimidine kinase compare
PP_2302 -0.9 -4.5 DNA-binding, ATP-dependent protease compare
PP_0378 -0.9 -5.4 Pyrroloquinoline-quinone synthase compare
PP_3505 -0.9 -2.4 conserved protein of unknown function compare
PP_1912 -0.9 -3.8 Phosphate acyltransferase compare
PP_1430 -0.9 -5.4 putative periplasmic serine endoprotease DegP-like compare
PP_4480 -0.8 -6.0 arginine N-succinyltransferase, subunit alpha compare
PP_2665 -0.8 -3.6 Glycerol metabolism activator compare
PP_5338 -0.8 -2.4 aspartate ammonia-lyase compare
PP_4902 -0.8 -1.8 Oligoribonuclease compare
PP_3102 -0.8 -3.4 conserved protein of unknown function compare
PP_3286 -0.8 -4.6 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4593 -0.8 -2.1 conserved protein of unknown function compare
PP_0362 -0.8 -6.1 Biotin synthase compare
PP_0366 -0.8 -4.5 dethiobiotin synthetase compare
PP_2675 -0.8 -2.8 Cytochrome c-type protein compare
PP_0339 -0.8 -3.7 Pyruvate dehydrogenase E1 component compare
PP_1076 -0.8 -3.9 aquaglyceroporin compare
PP_0856 -0.8 -2.7 conserved lipoprotein of unknown function compare
PP_4832 -0.7 -3.7 Precorrin-6x reductase compare
PP_5582 -0.7 -1.8 conserved protein of unknown function compare
PP_4546 -0.7 -3.0 ATP-dependent helicase HrpA compare
PP_3946 -0.7 -1.2 HTH-type transcriptional repressor NicR compare
PP_0365 -0.7 -5.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1075 -0.7 -5.3 glycerol kinase compare
PP_5104 -0.7 -5.1 thiazole synthase compare
PP_1876 -0.7 -3.1 putative ATP/GTP-binding protein of the AAA+ family compare
PP_2433 -0.7 -1.4 conserved protein of unknown function compare
PP_1678 -0.7 -3.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2389 -0.7 -3.4 conserved protein of unknown function compare
PP_4122 -0.7 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4984 -0.7 -5.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0001 -0.7 -1.3 probable chromosome-partitioning protein compare
PP_4988 -0.7 -3.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4363 -0.7 -4.7 Sensor histidine kinase/response regulator compare
PP_1941 -0.7 -3.4 conserved protein of unknown function compare
PP_2121 -0.7 -2.2 putative Lipoprotein compare
PP_2442 -0.7 -2.0 conserved protein of unknown function, DUF480 family compare
PP_5216 -0.7 -2.0 exopolyphosphatase compare
PP_1862 -0.7 -2.8 conserved membrane protein of unknown function compare
PP_4989 -0.7 -1.9 Protein PilJ compare
PP_3245 -0.7 -1.4 conserved protein of unknown function compare
PP_4098 -0.6 -1.0 UvrABC system protein C compare
PP_2324 -0.6 -4.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0914 -0.6 -4.6 GGDEF domain protein compare
PP_3829 -0.6 -2.9 Molybdenum transport system permease protein ModB compare
PP_0405 -0.6 -5.8 conserved protein of unknown function compare
PP_0379 -0.6 -3.9 Coenzyme PQQ synthesis protein B compare
PP_1237 -0.6 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5230 -0.6 -1.9 Tyrosine recombinase XerC compare
PP_1528 -0.6 -1.4 conserved protein of unknown function compare
PP_3903 -0.6 -1.4 conserved protein of unknown function compare
PP_4681 -0.6 -1.8 conserved protein of unknown function compare
PP_1428 -0.6 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_3828 -0.6 -3.8 Molybdate-binding periplasmic protein compare
PP_1719 -0.6 -4.1 Tail-specific protease prc compare
PP_0363 -0.6 -4.5 8-amino-7-oxononanoate synthase compare
PP_4993 -0.6 -2.3 Glutathione synthetase compare
PP_0257 -0.6 -3.4 protein sulfur transferase compare
PP_4880 -0.6 -3.8 exoribonuclease R compare
PP_0434 -0.6 -4.8 Anhydro-N-acetylmuramic acid kinase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Butanol in Pseudomonas putida KT2440

For carbon source Butanol across organisms