Experiment set15TCH743 for Dickeya dianthicola 67-19

M9+polygalacturonate

Group: carbon source
Media: M9+polygalacturonate
Culturing: Ddia6719, 24 well plate
By: Tyler on 1/24/22

Specific Phenotypes

For 9 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Multidrug Resistance Efflux Pumps	1
Peptidoglycan Biosynthesis	1
Phosphate metabolism	1
Purine conversions	1
Pyruvate metabolism I: anaplerotic reactions, PEP	1
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate	1
Serine-glyoxylate cycle	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycolysis / Gluconeogenesis
• Citrate cycle (TCA cycle)
• Purine metabolism
• Peptidoglycan biosynthesis
• Pyruvate metabolism
• Carbon fixation in photosynthetic organisms
• Nicotinate and nicotinamide metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
NAD phosphorylation and transhydrogenation	2	2	1
guanine and guanosine salvage I	2	2	1
xanthine and xanthosine salvage	2	2	1
guanine and guanosine salvage II	2	2	1
NAD phosphorylation and dephosphorylation	3	3	1
adenine salvage	3	2	1
superpathway of guanine and guanosine salvage	3	2	1
adenine and adenosine salvage III	4	4	1
glucose and glucose-1-phosphate degradation	5	4	1
NAD(P)/NADPH interconversion	6	4	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	4	2
gluconeogenesis I	13	13	1
superpathway of purine nucleotide salvage	14	13	1
superpathway of glyoxylate cycle and fatty acid degradation	14	11	1
C4 photosynthetic carbon assimilation cycle, PEPCK type	14	9	1
peptidoglycan biosynthesis II (staphylococci)	17	12	1
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	1