Experiment set15TCH731 for Dickeya dianthicola ME23
M9+polygalacturonate
Group: carbon sourceMedia: M9+polygalacturonate
Culturing: DdiaME23, 24 well plate
By: Tyler on 1/24/22
Specific Phenotypes
For 4 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Biotin biosynthesis | 2 |
| D-Galacturonate and D-Glucuronate Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| biotin biosynthesis from 8-amino-7-oxononanoate I | 4 | 4 | 3 |
| biotin biosynthesis from 8-amino-7-oxononanoate II | 4 | 3 | 3 |
| biotin biosynthesis from 8-amino-7-oxononanoate III | 5 | 3 | 3 |
| biotin biosynthesis II | 6 | 4 | 3 |
| D-galacturonate degradation I | 5 | 5 | 2 |
| β-D-glucuronide and D-glucuronate degradation | 3 | 2 | 1 |
| superpathway of hexuronide and hexuronate degradation | 10 | 9 | 3 |
| biotin biosynthesis I | 15 | 15 | 3 |
| pectin degradation II | 5 | 3 | 1 |
| superpathway of β-D-glucuronosides degradation | 7 | 6 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 19 | 3 |