Experiment set15TCH693 for Dickeya dadantii 3937
M9+starch
Group: carbon sourceMedia: M9+starch
Culturing: Dda3937, 24 well plate
By: Tyler on 1/24/22
Specific Phenotypes
For 8 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Maltose and Maltodextrin Utilization | 5 |
| Glycogen metabolism | 3 |
| Trehalose Uptake and Utilization | 2 |
| Bacterial Chemotaxis | 1 |
| Trehalose Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Glycolysis / Gluconeogenesis
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Aminosugars metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycogen biosynthesis I (from ADP-D-Glucose) | 4 | 4 | 2 |
| glycogen degradation I | 8 | 8 | 3 |
| glycogen degradation II | 6 | 4 | 2 |
| starch biosynthesis | 10 | 6 | 3 |
| starch degradation V | 4 | 3 | 1 |
| starch degradation III | 4 | 2 | 1 |
| glycogen biosynthesis II (from UDP-D-Glucose) | 4 | 1 | 1 |
| glucosylglycerol biosynthesis | 5 | 3 | 1 |
| sucrose biosynthesis II | 8 | 6 | 1 |
| glycogen biosynthesis III (from α-maltose 1-phosphate) | 8 | 2 | 1 |
| glycolysis I (from glucose 6-phosphate) | 13 | 13 | 1 |
| superpathway of glycolysis and the Entner-Doudoroff pathway | 17 | 16 | 1 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 25 | 1 |