Experiment set15IT081 for Pseudomonas putida KT2440

Compare to:

Heptanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0948 +1.3 5.8 Phosphocarrier protein HPr compare
PP_1655 +1.3 5.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1623 +1.3 9.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_5145 +1.3 12.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1113 +1.3 10.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0547 +1.2 4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4171 +1.2 10.2 conserved exported protein of unknown function compare
PP_5106 +1.1 4.0 conserved inner membrane protein compare
PP_4317 +1.1 3.9 conserved protein of unknown function compare
PP_4994 +1.0 6.4 conserved protein of unknown function compare
PP_5053 +1.0 4.8 Protein-export protein SecB compare
PP_2889 +1.0 3.2 putative Transmembrane regulator PrtR compare
PP_0250 +1.0 1.6 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1778 +0.9 4.5 Lipopolysaccharide ABC export system, permease protein compare
PP_1410 +0.9 1.9 conserved protein of unknown function compare
PP_4217 +0.9 8.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0138 +0.8 5.4 conserved membrane protein of unknown function compare
PP_2387 +0.8 3.3 conserved protein of unknown function compare
PP_4804 +0.8 3.0 RlpA-like lipoprotein compare
PP_4342 +0.8 2.1 flagellar synthesis regulator, putative ATPase compare
PP_5448 +0.8 4.3 conserved protein of unknown function compare
PP_5005 +0.8 5.9 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_0168 +0.7 6.9 putative surface adhesion protein compare
PP_4504 +0.7 1.0 conserved exported protein of unknown function compare
PP_4519 +0.7 6.5 Agglutination protein compare
PP_3971 +0.7 1.3 conserved protein of unknown function compare
PP_0240 +0.7 1.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4271 +0.7 0.8 conserved protein of unknown function compare
PP_1862 +0.7 2.0 conserved membrane protein of unknown function compare
PP_2060 +0.7 1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_t13 +0.7 1.8 tRNA-Lys compare
PP_0152 +0.7 1.8 conserved exported protein of unknown function compare
PP_2203 +0.7 1.5 conserved protein of unknown function compare
PP_2580 +0.7 2.6 conserved protein of unknown function compare
PP_4308 +0.7 3.0 Transcriptional regulator, AsnC family compare
PP_5232 +0.7 2.3 conserved protein of unknown function compare
PP_0801 +0.7 1.3 conserved exported protein of unknown function compare
PP_2067 +0.6 2.3 putative EmrB/QacA family drug resistance transporter compare
PP_5295 +0.6 2.0 conserved protein of unknown function compare
PP_0167 +0.6 5.8 Toxin secretion ATP-binding protein compare
PP_0166 +0.6 5.2 HlyD family secretion protein compare
PP_1454 +0.6 1.9 conserved protein of unknown function compare
PP_5003 +0.6 4.8 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_2581 +0.6 1.2 conserved protein of unknown function compare
PP_2816 +0.6 2.0 putative Transcriptional regulator NfxB compare
PP_5093 +0.6 1.1 twitching motility protein compare
PP_1898 +0.6 1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_0165 +0.6 5.2 GGDEF domain protein compare
PP_0886 +0.6 1.9 conserved exported protein of unknown function compare
PP_0274 +0.6 1.6 putative transcriptional regulator containing HTH domain compare
PP_1417 +0.6 2.3 putative Tricarboxylate transport protein TctB compare
PP_1845 +0.6 2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_0306 +0.6 1.9 conserved protein of unknown function compare
PP_2899 +0.6 1.4 conserved exported protein of unknown function compare
PP_0820 +0.6 2.6 GCN5-related N-acetyltransferase compare
PP_t49 +0.6 3.9 tRNA-Met compare
PP_2459 +0.6 1.2 ribose pyranase compare
PP_3831 +0.5 3.1 conserved protein of unknown function compare
PP_3037 +0.5 2.1 C4-type zinc finger protein, DksA/TraR family compare
PP_0355 +0.5 2.0 Response regulator compare
PP_5110 +0.5 2.4 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3035 +0.5 1.6 conserved protein of unknown function compare
PP_4159 +0.5 1.4 Potassium-transporting ATPase C chain compare
PP_0893 +0.5 1.0 ThiJ/PfpI family protein compare
PP_1512 +0.5 2.3 conserved protein of unknown function compare
PP_2189 +0.5 1.9 conserved protein of unknown function compare
PP_5157 +0.5 1.9 conserved exported protein of unknown function compare
PP_4208 +0.5 3.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0352 +0.5 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4961 +0.5 1.4 putative Lipoprotein compare
PP_2009 +0.5 3.2 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_0683 +0.5 2.2 conserved protein of unknown function compare
PP_4373 +0.5 3.8 Transcriptional regulator FleQ compare
PP_3205 +0.5 1.6 Fumarylacetoacetate hydrolase family protein compare
PP_5006 +0.5 2.3 Transcriptional regulator, TetR family compare
PP_3580 +0.5 1.1 conserved protein of unknown function compare
PP_2835 +0.5 1.0 putative oxidoreductase compare
PP_5625 +0.5 2.3 conserved protein of unknown function compare
PP_4837 +0.5 1.9 conserved protein of unknown function compare
PP_1122 +0.5 1.0 OmpA family protein compare
PP_2765 +0.5 1.5 putative Sulfonate monooxygenase MsuD compare
PP_2144 +0.5 2.0 Transcriptional regulator, TetR family compare
PP_4844 +0.5 2.3 putative Urea ABC transporter, ATP-binding protein compare
PP_4288 +0.5 2.7 ureidoglycolate lyase compare
PP_3926 +0.5 0.8 short-chain dehydrogenase compare
PP_1004 +0.5 1.3 conserved protein of unknown function compare
PP_0211 +0.5 1.8 conserved protein of unknown function compare
PP_5008 +0.5 0.7 Poly granule-associated protein compare
PP_4406 +0.5 1.0 conserved protein of unknown function compare
PP_4173 +0.5 3.2 Sensor histidine kinase/response regulator compare
PP_3935 +0.5 1.3 conserved protein of unknown function compare
PP_5658 +0.5 1.0 protein of unknown function compare
PP_4227 +0.5 0.6 conserved protein of unknown function compare
PP_2908 +0.5 1.4 DNA-binding transcriptional repressor compare
PP_1779 +0.5 2.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2972 +0.5 1.2 conserved protein of unknown function compare
PP_1522 +0.4 2.4 major cold shock protein compare
PP_3052 +0.4 0.8 conserved protein of unknown function compare
PP_3145 +0.4 1.8 conserved protein of unknown function compare
PP_5597 +0.4 1.4 conserved protein of unknown function compare
PP_5184 +0.4 2.3 glutamylpolyamine synthetase compare
PP_1112 +0.4 2.7 conserved membrane protein of unknown function compare
PP_3380 +0.4 1.7 2-ketogluconate utilization repressor compare
PP_4172 +0.4 2.5 conserved exported protein of unknown function compare
PP_5699 +0.4 3.1 putative iron uptake protein compare
PP_3411 +0.4 0.8 conserved protein of unknown function compare
PP_5667 +0.4 1.9 putative microcin B17-like-processing protein, McbC family compare
PP_2916 +0.4 1.7 riboflavin synthase compare
PP_2357 +0.4 2.6 putative Type 1 pili protein CsuB compare
PP_4528 +0.4 1.4 conserved protein of unknown function compare
PP_3179 +0.4 1.6 Transcriptional regulator, LysR family compare
PP_2147 +0.4 1.7 conserved exported protein of unknown function compare
PP_4054 +0.4 0.8 conserved protein of unknown function compare
PP_1635 +0.4 1.7 DNA-binding response regulator compare
PP_4785 +0.4 2.6 conserved exported protein of unknown function compare
PP_0132 +0.4 2.1 Alginate biosynthesis sensor protein KinB compare
PP_2373 +0.4 0.6 conserved protein of unknown function compare
PP_5557 +0.4 1.4 protein of unknown function compare
PP_3504 +0.4 1.8 conserved protein of unknown function compare
PP_0236 +0.4 1.3 NAD(P)H-dependent FMN reductase subunit compare
PP_3524 +0.4 2.4 conserved protein of unknown function compare
PP_5533 +0.4 0.7 conserved protein of unknown function compare
PP_4517 +0.4 0.9 conserved protein of unknown function compare
PP_4199 +0.4 0.7 putative Lipoprotein compare
PP_3098 +0.4 0.6 conserved protein of unknown function compare
PP_5393 +0.4 0.7 putative metal-binding chaperone compare
PP_0134 +0.4 2.8 conserved exported protein of unknown function compare
PP_0182 +0.4 1.7 conserved protein of unknown function compare
PP_2330 +0.4 1.8 conserved protein of unknown function compare
PP_4855 +0.4 2.4 Osmotically-inducible lipoprotein OsmE compare
PP_4793 +0.4 1.3 conserved protein of unknown function compare
PP_1656 +0.4 2.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_3643 +0.4 1.9 putative Oxidoreductase compare
PP_5631 +0.4 2.1 protein of unknown function compare
PP_2121 +0.4 1.1 putative Lipoprotein compare
PP_2712 +0.4 1.8 conserved exported protein of unknown function compare
PP_2845 +0.4 1.4 urease subunit alpha compare
PP_1255 +0.4 2.1 putative cis-4-hydroxy-D-proline oxidase compare
PP_1611 +0.4 1.9 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_5451 +0.4 1.5 protein of unknown function compare
PP_3398 +0.4 1.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5714 +0.4 1.5 conserved protein of unknown function compare
PP_3726 +0.4 0.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_1386 +0.4 2.9 Probable efflux pump periplasmic linker TtgA compare
PP_4449 +0.4 1.5 conserved protein of unknown function compare
PP_1855 +0.4 1.6 conserved exported protein of unknown function compare
PP_2622 +0.4 1.7 conserved protein of unknown function compare
PP_0796 +0.4 2.6 conserved protein of unknown function compare
PP_3946 +0.4 0.7 HTH-type transcriptional repressor NicR compare
PP_0957 +0.4 0.7 D-arabinose 5-phosphate isomerase compare
PP_3532 +0.4 0.8 Transcriptional regulator, AsnC family compare
PP_3284 +0.4 1.6 enoyl-CoA hydratase-isomerase compare
PP_5583 +0.4 1.0 conserved protein of unknown function compare
PP_1683 +0.4 1.3 Transcriptional regulator, MarR family compare
PP_1651 +0.4 2.1 two-component response regulator compare
PP_0643 +0.4 1.4 protein of unknown function compare
PP_1890 +0.4 2.4 Type 1 pili chaperone protein FimC compare
PP_1071 +0.4 2.5 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_5542 +0.4 1.8 protein of unknown function compare
PP_2036 +0.4 2.0 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2771 +0.4 2.1 Sigma-54 dependent transcriptional regulator compare
PP_2814 +0.4 1.4 conserved protein of unknown function compare
PP_3367 +0.4 1.9 conserved protein of unknown function compare
PP_4296 +0.4 0.8 conserved exported protein of unknown function compare
PP_3930 +0.4 1.2 conserved exported protein of unknown function compare
PP_4212 +0.4 1.6 pyoverdine biosynthesis related protein compare
PP_3181 +0.4 2.2 Site-specific recombinase, phage integrase family compare
PP_2320 +0.4 3.1 conserved exported protein of unknown function compare
PP_2978 +0.4 1.3 conserved protein of unknown function compare
PP_4470 +0.4 2.2 putative transcriptional regulator (Arc domain-containing) compare
PP_3538 +0.4 2.5 transcriptional regulator compare
PP_0195 +0.4 1.4 conserved protein of unknown function compare
PP_1987 +0.4 0.7 Methlytransferase, UbiE/COQ5 family compare
PP_2306 +0.4 1.0 conserved exported protein of unknown function compare
PP_0209 +0.4 2.1 ATP-binding taurine transporter subunit compare
PP_1141 +0.4 2.3 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1562 +0.4 0.9 putative Phage terminase, small subunit compare
PP_2933 +0.4 2.4 GSH-dependent disulfide bond oxidoreductase compare
PP_5730 +0.4 1.6 conserved protein of unknown function compare
PP_2804 +0.3 1.1 Hydrolase, alpha/beta fold family compare
PP_1441 +0.3 1.6 tRNA (cmo5U34)-methyltransferase compare
PP_3320 +0.3 1.0 conserved protein of unknown function compare
PP_1650 +0.3 2.8 Sensor protein GacS compare
PP_0398 +0.3 1.6 Thiosulfate sulfurtransferase GlpE compare
PP_5704 +0.3 1.3 conserved protein of unknown function compare
PP_4136 +0.3 0.4 Transcriptional regulator, LuxR family compare
PP_0610 +0.3 1.1 conserved exported protein of unknown function compare
PP_5200 +0.3 2.4 proline aminopeptidase P II compare
PP_2745 +0.3 1.3 Universal stress protein family compare
PP_1077 +0.3 2.2 Cys-tRNAPro deacylase compare
PP_2323 +0.3 2.8 conserved protein of unknown function compare
PP_4759 +0.3 2.4 transcriptional regulator, GntR family compare
PP_3480 +0.3 0.8 conserved protein of unknown function compare
PP_5469 +0.3 1.1 putative SAM-dependent methyltransferase compare
PP_1005 +0.3 1.1 Heme oxygenase compare
PP_5693 +0.3 2.2 conserved protein of unknown function compare
PP_3594 +0.3 1.9 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_3254 +0.3 1.6 putative Nucleosidase compare
PP_3651 +0.3 2.7 Sensor histidine kinase/response regulator compare
PP_2175 +0.3 1.4 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Heptanoic acid in Pseudomonas putida KT2440

For carbon source Heptanoic acid across organisms