Experiment set15IT080 for Pseudomonas putida KT2440

Compare to:

Oleic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0948 +1.7 6.7 Phosphocarrier protein HPr compare
PP_5145 +1.5 13.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4835 +1.4 1.3 conserved exported protein of unknown function compare
PP_3198 +1.3 1.9 Ferredoxin, 2Fe-2S compare
PP_1113 +1.3 7.1 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2581 +1.2 2.0 conserved protein of unknown function compare
PP_1562 +1.2 1.3 putative Phage terminase, small subunit compare
PP_1344 +1.1 1.7 conserved protein of unknown function compare
PP_0319 +1.0 2.7 conserved protein of unknown function compare
PP_5146 +1.0 5.8 RNA pyrophosphohydrolase compare
PP_1004 +1.0 2.4 conserved protein of unknown function compare
PP_0276 +1.0 1.7 Transcriptional regulator, Cro/CI family compare
PP_1293 +1.0 1.5 molybdopterin synthase small subunit compare
PP_4952 +1.0 2.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5483 +0.9 1.8 conserved protein of unknown function compare
PP_2835 +0.9 2.3 putative oxidoreductase compare
PP_1623 +0.9 6.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_4171 +0.9 7.8 conserved exported protein of unknown function compare
PP_4561 +0.9 1.3 stress response protein compare
PP_5230 +0.9 2.5 Tyrosine recombinase XerC compare
PP_3892 +0.9 1.8 conserved protein of unknown function compare
PP_2414 +0.9 2.1 conserved exported protein of unknown function compare
PP_4227 +0.8 1.6 conserved protein of unknown function compare
PP_4172 +0.8 3.8 conserved exported protein of unknown function compare
PP_5597 +0.8 2.3 conserved protein of unknown function compare
PP_4173 +0.8 4.3 Sensor histidine kinase/response regulator compare
PP_3908 +0.8 2.6 conserved protein of unknown function compare
PP_0127 +0.8 3.7 Thiol:disulfide interchange protein compare
PP_5000 +0.8 1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_5556 +0.8 3.1 putative bacteriophage lysis protein compare
PP_2677 +0.8 2.1 conserved exported protein of unknown function compare
PP_2387 +0.8 2.4 conserved protein of unknown function compare
PP_0775 +0.8 1.1 conserved protein of unknown function compare
PP_3035 +0.7 2.5 conserved protein of unknown function compare
PP_1655 +0.7 3.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5451 +0.7 3.2 protein of unknown function compare
PP_1224 +0.7 2.9 periplasmic subunit of the TolQRA transport system compare
PP_2976 +0.7 2.1 putative transposase compare
PP_4470 +0.7 2.5 putative transcriptional regulator (Arc domain-containing) compare
PP_5110 +0.7 1.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0683 +0.7 2.5 conserved protein of unknown function compare
PP_4217 +0.7 6.3 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5093 +0.7 1.3 twitching motility protein compare
PP_5693 +0.7 4.0 conserved protein of unknown function compare
PP_2970 +0.7 2.0 conserved exported protein of unknown function compare
PP_0211 +0.7 2.3 conserved protein of unknown function compare
PP_5658 +0.7 1.5 protein of unknown function compare
PP_2716 +0.7 2.3 arsenate reductase compare
PP_4159 +0.7 2.9 Potassium-transporting ATPase C chain compare
PP_5644 +0.6 1.5 conserved membrane protein of unknown function compare
PP_5313 +0.6 1.7 DNA-binding protein HU-alpha compare
PP_4847 +0.6 0.8 chaperone modulatory of CbpA co-chaperone protein compare
PP_4069 +0.6 2.0 conserved protein of unknown function compare
PP_5027 +0.6 1.4 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0914 +0.6 4.0 GGDEF domain protein compare
PP_4196 +0.6 1.6 conserved exported protein of unknown function compare
PP_5557 +0.6 1.9 protein of unknown function compare
PP_1742 +0.6 2.1 conserved inner membrane protein of unknown function compare
PP_2254 +0.6 2.2 Transcriptional regulator, GntR family compare
PP_4238 +0.6 2.6 conserved protein of unknown function compare
PP_3757 +0.6 1.2 Chemotaxis protein CheY compare
PP_5030 +0.6 2.5 Imidazolonepropionase compare
PP_0163 +0.6 4.6 putative transcriptional regulator compare
PP_5176 +0.6 1.6 conserved protein of unknown function compare
PP_3398 +0.6 1.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0880 +0.6 1.2 dipeptide ABC transporter - putative membrane subunit compare
PP_3408 +0.6 1.6 cobalt transporter subunit A compare
PP_2740 +0.6 1.3 Transcriptional regulator, MerR family compare
PP_3532 +0.6 1.1 Transcriptional regulator, AsnC family compare
PP_0679 +0.6 2.7 conserved exported protein of unknown function compare
PP_0058 +0.6 5.6 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1068 +0.6 1.7 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_0833 +0.6 1.3 queuine tRNA-ribosyltransferase compare
PP_1935 +0.6 1.2 Transcriptional regulator, Cro/CI family compare
PP_t57 +0.6 1.6 tRNA-Arg compare
PP_2210 +0.6 2.2 LysR family transcriptional regulator compare
PP_2580 +0.6 1.5 conserved protein of unknown function compare
PP_0893 +0.6 1.0 ThiJ/PfpI family protein compare
PP_5191 +0.6 1.6 conserved exported protein of unknown function compare
PP_0536 +0.6 1.7 conserved protein of unknown function compare
PP_5552 +0.6 1.7 conserved protein of unknown function compare
PP_1352 +0.6 1.5 UPF0234 protein PP_1352 compare
PP_2633 +0.6 1.4 conserved protein of unknown function compare
PP_1716 +0.6 1.0 Transcriptional regulator, Cro/CI family compare
PP_3424 +0.5 2.3 Type II secretion pathway protein XcpS compare
PP_1697 +0.5 1.3 transcriptional regulator, GntR family compare
PP_1410 +0.5 0.9 conserved protein of unknown function compare
PP_4102 +0.5 1.5 conserved protein of unknown function compare
PP_4517 +0.5 0.8 conserved protein of unknown function compare
PP_0821 +0.5 1.5 conserved exported protein of unknown function compare
PP_2075 +0.5 2.7 conserved membrane protein of unknown function compare
PP_3880 +0.5 1.1 conserved exported protein of unknown function compare
PP_0048 +0.5 0.8 conserved protein of unknown function compare
PP_0903 +0.5 1.8 conserved protein of unknown function compare
PP_0086 +0.5 1.5 conserved protein of unknown function compare
PP_2309 +0.5 1.0 conserved protein of unknown function compare
PP_2189 +0.5 1.2 conserved protein of unknown function compare
PP_2172 +0.5 1.9 conserved exported protein of unknown function compare
PP_0152 +0.5 1.1 conserved exported protein of unknown function compare
PP_5538 +0.5 2.5 putative ABC transporter, substrate-binding protein compare
PP_1817 +0.5 1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0301 +0.5 2.0 betainyl-CoA thiolase compare
PP_2416 +0.5 1.7 putative Iron ABC transporter, ATP-binding protein compare
PP_5005 +0.5 3.3 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4370 +0.5 1.9 Flagellar hook-basal body complex protein FliE compare
PP_0232 +0.5 0.6 ATP-binding taurine transporter subunit compare
PP_4015 +0.5 1.7 HflD-like high frequency lysogenization protein compare
PP_2105 +0.5 1.9 conserved protein of unknown function compare
PP_3455 +0.5 2.0 Multidrug efflux RND membrane fusion protein compare
PP_1774 +0.5 0.8 conserved exported protein of unknown function compare
PP_4518 +0.5 2.4 conserved protein of unknown function compare
PP_1122 +0.5 0.9 OmpA family protein compare
PP_4265 +0.5 1.4 DNA-binding transcriptional dual regulator compare
PP_5582 +0.5 0.8 conserved protein of unknown function compare
PP_4586 +0.5 2.9 conserved exported protein of unknown function compare
PP_3564 +0.5 2.7 Transcriptional regulator, AraC family compare
PP_2653 +0.5 1.1 Transcriptional regulator, Cro/CI family compare
PP_2825 +0.5 1.5 putative Integrase compare
PP_3480 +0.5 1.4 conserved protein of unknown function compare
PP_1745 +0.5 2.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_5508 +0.5 0.7 conserved protein of unknown function compare
PP_4509 +0.5 1.9 conserved protein of unknown function compare
PP_2793 +0.5 1.0 Acyl-CoA dehydrogenase family protein compare
PP_0181 +0.5 1.5 conserved protein of unknown function compare
PP_0770 +0.5 2.3 PemI-like protein compare
PP_5704 +0.5 1.2 conserved protein of unknown function compare
PP_3883 +0.5 0.8 putative Phage holin compare
PP_2933 +0.5 2.9 GSH-dependent disulfide bond oxidoreductase compare
PP_2409 +0.5 1.1 cobalt-zinc-cadmium resistance protein compare
PP_4296 +0.5 0.6 conserved exported protein of unknown function compare
PP_4109 +0.5 0.7 conserved protein of unknown function compare
PP_0550 +0.5 1.7 conserved protein of unknown function compare
PP_1722 +0.5 1.9 ABC transporter, ATP-binding protein compare
PP_4271 +0.5 0.4 conserved protein of unknown function compare
PP_2683 +0.5 2.0 putative sensory box histidine kinase/response regulator compare
PP_0306 +0.5 1.4 conserved protein of unknown function compare
PP_0361 +0.4 0.9 putative Competence protein ComF compare
PP_0973 +0.4 1.6 Nucleoid-associated protein PP_0973 compare
PP_5456 +0.4 0.5 conserved protein of unknown function compare
PP_5714 +0.4 1.5 conserved protein of unknown function compare
PP_2067 +0.4 1.1 putative EmrB/QacA family drug resistance transporter compare
PP_2547 +0.4 1.4 Transcriptional regulator, LysR family compare
PP_2323 +0.4 3.3 conserved protein of unknown function compare
PP_0874 +0.4 0.8 conserved protein of unknown function compare
PP_4690 +0.4 2.2 Rieske 2Fe-2S family protein compare
PP_3831 +0.4 2.9 conserved protein of unknown function compare
PP_5671 +0.4 1.7 conserved protein of unknown function compare
PP_2361 +0.4 2.5 putative chaperone protein compare
PP_5063 +0.4 1.9 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_2227 +0.4 1.9 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_0132 +0.4 2.0 Alginate biosynthesis sensor protein KinB compare
PP_4212 +0.4 1.8 pyoverdine biosynthesis related protein compare
PP_1999 +0.4 1.0 membrane protein required for colicin V production compare
PP_1473 +0.4 1.4 conserved protein of unknown function compare
PP_4054 +0.4 1.0 conserved protein of unknown function compare
PP_2318 +0.4 2.4 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_2999 +0.4 0.8 Glyoxalase family protein compare
PP_3884 +0.4 1.4 Phage holin, lambda family compare
PP_2415 +0.4 2.1 putative acetyltransferase, GNAT family compare
PP_1994 +0.4 0.9 tRNA pseudouridine (38-40)synthase compare
PP_2412 +0.4 1.8 ParA family protein compare
PP_4156 +0.4 1.4 Transcriptional regulator, LysR family compare
PP_2099 +0.4 1.9 conserved protein of unknown function compare
PP_4392 +0.4 3.1 chemotaxis protein methyltransferase compare
PP_1415 +0.4 1.4 putative membrane associated enzyme subunit compare
PP_4273 +0.4 0.9 Transcriptional regulator, MerR family compare
PP_2322 +0.4 2.8 Major outer membrane lipoprotein compare
PP_2030 +0.4 1.3 conserved protein of unknown function compare
PP_1438 +0.4 1.4 response regulator compare
PP_0227 +0.4 3.1 periplasmic cystine-binding protein compare
PP_2050 +0.4 1.6 conserved protein of unknown function compare
PP_4697 +0.4 1.7 poly(A) polymerase compare
PP_2594 +0.4 2.1 Ferric anguibactin transport system permease protein FatD compare
PP_4961 +0.4 0.9 putative Lipoprotein compare
PP_2347 +0.4 1.5 DNA-binding response regulator compare
PP_3509 +0.4 1.1 Glyoxalase family protein compare
PP_3323 +0.4 1.6 CobW/P47K family protein compare
PP_5232 +0.4 0.7 conserved protein of unknown function compare
PP_3365 +0.4 0.7 Acetolactate synthase compare
PP_1776 +0.4 3.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2404 +0.4 1.4 conserved exported protein of unknown function compare
PP_4332 +0.4 1.5 Chemotaxis protein CheW compare
PP_0091 +0.4 2.8 putative lipoprotein compare
PP_1898 +0.4 0.7 MotA/TolQ/ExbB proton channel family protein compare
PP_2187 +0.4 1.9 Universal stress protein family compare
PP_2077 +0.4 2.6 diaminopimelate decarboxylase compare
PP_1261 +0.4 1.3 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4240 +0.4 1.8 putative Microcin b17 processing protein mcbd compare
PP_2197 +0.4 0.9 conserved exported protein of unknown function compare
PP_3380 +0.4 1.5 2-ketogluconate utilization repressor compare
PP_5003 +0.4 2.7 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_5216 +0.4 0.9 exopolyphosphatase compare
PP_5695 +0.4 1.4 conserved protein of unknown function compare
PP_0957 +0.4 0.9 D-arabinose 5-phosphate isomerase compare
PP_4406 +0.4 0.8 conserved protein of unknown function compare
PP_0917 +0.4 1.7 Chromosome initiation inhibitor compare
PP_4367 +0.4 1.4 Flagellar assembly protein FliH compare
PP_2752 +0.4 1.7 conserved exported protein of unknown function compare
PP_0511 +0.4 1.7 putative methyltransferase compare
PP_1561 +0.4 2.3 putative Phage holin compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Oleic acid in Pseudomonas putida KT2440

For carbon source Oleic acid across organisms