Experiment set15IT079 for Pseudomonas putida KT2440

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0356 -4.9 -8.1 malate synthase G compare
PP_4116 -4.9 -13.9 isocitrate lyase compare
PP_0691 -4.8 -4.7 Glutamate 5-kinase compare
PP_3756 -4.7 -7.0 TetR family transcriptional regulator compare
PP_4909 -4.5 -8.7 phosphoserine phosphatase compare
PP_0289 -4.5 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5155 -4.5 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5185 -4.4 -7.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5098 -4.4 -10.4 methionine biosynthesis protein MetW compare
PP_1988 -4.3 -10.6 3-isopropylmalate dehydrogenase compare
PP_1664 -4.3 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_0290 -4.2 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -4.2 -4.1 tryptophan synthase alpha chain compare
PP_3553 -4.2 -10.2 AMP-binding domain protein compare
PP_3511 -4.1 -7.2 Branched-chain-amino-acid aminotransferase compare
PP_0422 -4.0 -5.0 Indole-3-glycerol phosphate synthase compare
PP_1986 -3.9 -3.7 3-isopropylmalate dehydratase small subunit compare
PP_2029 -3.9 -2.7 von Willebrand factor type A domain protein compare
PP_0293 -3.9 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -3.8 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_4793 -3.8 -2.5 conserved protein of unknown function compare
PP_4678 -3.8 -12.9 Ketol-acid reductoisomerase compare
PP_4723 -3.8 -12.1 Carbamoyl-phosphate synthase large chain compare
PP_1995 -3.7 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0184 -3.7 -6.2 Argininosuccinate lyase compare
PP_2371 -3.6 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1985 -3.6 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_3999 -3.6 -7.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0966 -3.6 -9.7 Histidinol dehydrogenase compare
PP_0083 -3.6 -6.4 tryptophan synthase beta chain compare
PP_0967 -3.6 -6.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4700 -3.6 -4.2 pantothenate synthetase compare
PP_1025 -3.5 -11.6 2-isopropylmalate synthase compare
PP_4680 -3.5 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5659 -3.5 -4.5 protein of unknown function compare
PP_5313 -3.4 -2.7 DNA-binding protein HU-alpha compare
PP_3552 -3.4 -9.4 Sensory box histidine kinase compare
PP_5128 -3.4 -6.4 Dihydroxy-acid dehydratase compare
PP_0292 -3.4 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4699 -3.4 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4679 -3.3 -5.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.3 -14.4 Anthranilate synthase component 1 compare
PP_1079 -3.3 -4.3 Ornithine carbamoyltransferase compare
PP_1088 -3.3 -11.2 Argininosuccinate synthase compare
PP_1826 -3.3 -2.3 Hydrolase, isochorismatase family compare
PP_2001 -3.2 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_3754 -3.2 -4.8 Beta-ketothiolase BktB compare
PP_2217 -3.2 -3.0 enoyl-CoA hydratase compare
PP_5015 -3.2 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5289 -3.2 -4.2 Acetylglutamate kinase compare
PP_4364 -3.2 -5.3 putative Anti-sigma F factor antagonist compare
PP_3554 -3.1 -11.9 Acyl-CoA dehydrogenase family protein compare
PP_5097 -3.1 -10.6 homoserine O-acetyltransferase compare
PP_0965 -3.1 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0001 -3.1 -2.6 probable chromosome-partitioning protein compare
PP_4799 -3.1 -2.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5085 -3.0 -6.9 malic enzyme B compare
PP_0421 -2.9 -7.2 Anthranilate phosphoribosyltransferase compare
PP_0420 -2.9 -6.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5095 -2.9 -1.9 pyrroline-5-carboxylate reductase compare
PP_0834 -2.8 -1.9 Sec translocation complex subunit YajC compare
PP_3755 -2.7 -5.2 3-hydroxybutyryl-CoA dehydrogenase compare
PP_1716 -2.7 -2.3 Transcriptional regulator, Cro/CI family compare
PP_2402 -2.7 -2.6 putative Sensor histidine kinase compare
PP_2356 -2.6 -8.1 putative Phytochrome family protein compare
PP_0959 -2.6 -3.0 phospholipid ABC transporter compare
PP_4890 -2.5 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_1231 -2.4 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2327 -2.4 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4058 -2.3 -9.5 1,4-alpha-glucan branching enzyme compare
PP_1054 -2.3 -1.7 Type II secretion pathway protein XcpZ compare
PP_0164 -2.3 -5.4 conserved protein of unknown function compare
PP_2354 -2.3 -8.1 Sensory box histidine kinase/response regulator compare
PP_3753 -2.3 -4.6 Transcriptional regulator, AraC family compare
PP_2337 -2.3 -1.5 aconitate isomerase compare
PP_3286 -2.2 -6.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4989 -2.2 -3.4 Protein PilJ compare
PP_3551 -2.2 -1.7 DNA-binding response regulator, LuxR family compare
PP_0888 -2.1 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_5217 -2.1 -13.7 Polyphosphate kinase compare
PP_3902 -2.1 -3.1 conserved protein of unknown function compare
PP_2000 -2.1 -1.5 amidophosphoribosyl transferase compare
PP_5471 -2.1 -2.4 putative response regulator receiver protein compare
PP_1589 -2.0 -6.6 uridylyltransferase compare
PP_0801 -2.0 -1.3 conserved exported protein of unknown function compare
PP_4937 -2.0 -1.9 toluene tolerance protein compare
PP_4696 -1.9 -1.9 Nitrogen regulation protein NR(I) compare
PP_5216 -1.9 -2.6 exopolyphosphatase compare
PP_5014 -1.9 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_2370 -1.9 -2.0 conserved protein of unknown function compare
PP_0787 -1.8 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2136 -1.8 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2433 -1.8 -2.2 conserved protein of unknown function compare
PP_0291 -1.7 -2.0 conserved protein of unknown function compare
PP_5329 -1.7 -4.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2302 -1.7 -3.6 DNA-binding, ATP-dependent protease compare
PP_0841 -1.7 -2.7 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0048 -1.7 -1.1 conserved protein of unknown function compare
PP_2345 -1.7 -2.0 conserved exported protein of unknown function compare
PP_1764 -1.7 -5.5 Phosphoglycolate phosphatase 2 compare
PP_4121 -1.6 -1.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4098 -1.6 -1.4 UvrABC system protein C compare
PP_3903 -1.6 -2.2 conserved protein of unknown function compare
PP_4004 -1.6 -1.5 DNA translocase FtsK compare
PP_1695 -1.6 -6.6 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_0958 -1.6 -4.1 phospholipid ABC transporter ATP-binding subunit compare
PP_4247 -1.5 -2.1 Exonuclease compare
PP_5035 -1.5 -4.3 Histidine utilization repressor compare
PP_3248 -1.5 -1.0 Dyp-type peroxidase family protein compare
PP_3726 -1.5 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1635 -1.5 -2.8 DNA-binding response regulator compare
PP_1629 -1.5 -3.3 Protein RecA compare
PP_3833 -1.5 -4.1 Response regulator compare
PP_1237 -1.5 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4993 -1.5 -3.1 Glutathione synthetase compare
PP_4045 -1.5 -3.1 conserved protein of unknown function compare
PP_2328 -1.4 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_4008 -1.4 -4.6 ATP-dependent serine protease compare
PP_3971 -1.4 -1.1 conserved protein of unknown function compare
PP_1493 -1.4 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2414 -1.4 -2.1 conserved exported protein of unknown function compare
PP_3603 -1.4 -3.2 Transcriptional regulator, GntR family compare
PP_2326 -1.4 -5.0 Universal stress protein compare
PP_0434 -1.4 -7.8 Anhydro-N-acetylmuramic acid kinase compare
PP_4296 -1.4 -1.1 conserved exported protein of unknown function compare
PP_0063 -1.4 -0.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1109 -1.4 -6.8 Transcriptional regulator, GntR family compare
PP_5327 -1.4 -4.3 putative phosphate ABC transporter, permease subunit compare
PP_0003 -1.3 -2.2 16S RNA methyltransferase compare
PP_0313 -1.3 -1.1 putative electron transfer flavoprotein beta subunit compare
PP_1262 -1.3 -6.1 LysR family transcriptional regulator conserved
PP_1021 -1.3 -4.1 DNA-binding transcriptional regulator compare
PP_2499 -1.3 -1.1 conserved protein of unknown function compare
PP_1415 -1.3 -1.8 putative membrane associated enzyme subunit compare
PP_4622 -1.3 -2.5 Hmg transcriptional repressor compare
PP_5491 -1.3 -2.0 conserved protein of unknown function with SEC-C motif domain compare
PP_5328 -1.2 -2.1 putative phosphate transport system permease protein compare
PP_5253 -1.2 -2.7 Arylesterase compare
PP_1734 -1.2 -2.2 Probable septum site-determining protein MinC compare
PP_4829 -1.2 -2.0 putative precorrin-3B synthase compare
PP_3880 -1.2 -1.3 conserved exported protein of unknown function compare
PP_0405 -1.2 -9.9 conserved protein of unknown function compare
PP_1355 -1.2 -9.3 Muropeptide permease AmpG compare
PP_5600 -1.2 -2.4 conserved protein of unknown function compare
PP_1233 -1.2 -2.2 sulfurtransferase compare
PP_1304 -1.2 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4419 -1.2 -1.5 transposase compare
PP_t12 -1.2 -0.8 tRNA-Thr compare
PP_1855 -1.2 -3.1 conserved exported protein of unknown function compare
PP_0025 -1.1 -1.0 hypothetical protein compare
PP_3649 -1.1 -2.5 Transcriptional regulator, GntR family compare
PP_2145 -1.1 -3.9 beta-N-acetylglucosaminidase compare
PP_5352 -1.1 -6.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5346 -1.1 -4.5 pyruvate carboxylase subunit B compare
PP_2446 -1.1 -3.6 conserved exported protein of unknown function compare
PP_4122 -1.1 -0.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5045 -1.1 -2.6 tRNA sulfurtransferase compare
PP_5SB -1.1 -2.3 5S ribosomal RNA compare
PP_4575 -1.1 -2.0 Urea amidolyase-related protein compare
PP_1428 -1.1 -1.0 Sigma factor AlgU negative regulatory protein compare
PP_4695 -1.1 -4.4 Sensory box histidine kinase compare
PP_2868 -1.1 -4.1 Transcriptional regulator, Cro/CI family compare
PP_4738 -1.1 -1.7 conserved exported protein of unknown function compare
PP_1344 -1.1 -0.9 conserved protein of unknown function compare
PP_1381 -1.1 -0.8 4-carboxymuconolactone decarboxylase compare
PP_1110 -1.1 -1.6 serine acetyltransferase compare
PP_0978 -1.1 -1.3 conserved protein of unknown function compare
PP_0852 -1.1 -1.2 Transcriptional regulator, Cro/CI family compare
PP_3190 -1.1 -2.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_1609 -1.0 -0.8 conserved protein of unknown function compare
PP_3539 -1.0 -1.2 putative Transcriptional regulator compare
PP_2903 -1.0 -1.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4875 -1.0 -2.3 conserved membrane protein of unknown function compare
PP_5294 -1.0 -2.9 Ribonuclease PH compare
PP_5317 -1.0 -1.4 Probable chorismate pyruvate-lyase compare
PP_1621 -1.0 -2.6 Protein-L-isoaspartate O-methyltransferase compare
PP_0738 -1.0 -2.3 conserved protein of unknown function compare
PP_1679 -1.0 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0326 -1.0 -2.8 sarcosine oxidase subunit gamma compare
PP_2857 -1.0 -1.3 conserved exported protein of unknown function compare
PP_1111 -1.0 -2.7 putative Synthetase compare
PP_3808 -1.0 -1.7 Antibiotic synthesis protein MbtH compare
PP_4129 -1.0 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1994 -1.0 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_5054 -1.0 -0.9 glutaredoxin 3 compare
PP_3899 -1.0 -1.1 conserved protein of unknown function, hicB family compare
PP_4480 -1.0 -3.9 arginine N-succinyltransferase, subunit alpha compare
PP_5028 -1.0 -1.7 proline iminopeptidase compare
PP_5652 -1.0 -0.7 conserved protein of unknown function, phage origin compare
PP_0879 -1.0 -3.0 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1303 -0.9 -2.7 Sulfate adenylyltransferase subunit 2 compare
PP_4379 -0.9 -2.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0312 -0.9 -2.6 electron transfer flavoprotein, alpha subunit compare
PP_3121 -0.9 -1.9 transcriptional regulator, LysR family compare
PP_5248 -0.9 -0.9 putative hydrolase compare
PP_4925 -0.9 -2.1 conserved protein of unknown function compare
PP_0949 -0.9 -2.7 putative ATP-binding protein UPF0042 compare
PP_4902 -0.9 -1.2 Oligoribonuclease compare
PP_3312 -0.9 -0.8 putative Heat shock protein compare
PP_2168 -0.9 -3.9 Transaldolase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas putida KT2440

For carbon source Sodium butyrate across organisms