Experiment set15IT078 for Pseudomonas putida KT2440

Compare to:

Myristic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4890 -7.6 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -7.2 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.7 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2136 -6.3 -4.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1986 -6.1 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_5659 -6.0 -5.7 protein of unknown function compare
PP_5185 -6.0 -8.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4724 -5.9 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_4723 -5.8 -15.5 Carbamoyl-phosphate synthase large chain compare
PP_0083 -5.6 -5.5 tryptophan synthase beta chain compare
PP_1988 -5.6 -12.5 3-isopropylmalate dehydrogenase compare
PP_3511 -5.5 -11.7 Branched-chain-amino-acid aminotransferase compare
PP_2137 -5.4 -4.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_0356 -5.4 -12.2 malate synthase G compare
PP_4678 -5.4 -16.2 Ketol-acid reductoisomerase compare
PP_4680 -5.4 -18.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0368 -5.2 -16.1 putative Acyl-CoA dehydrogenase compare
PP_0184 -5.2 -7.1 Argininosuccinate lyase compare
PP_0290 -5.2 -9.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -5.1 -6.9 Glutamate 5-kinase compare
PP_0967 -4.9 -11.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4116 -4.9 -13.9 isocitrate lyase compare
PP_0965 -4.8 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -4.8 -7.9 Ornithine carbamoyltransferase compare
PP_4700 -4.7 -5.6 pantothenate synthetase compare
PP_4549 -4.7 -14.2 long-chain-fatty-acid/CoA ligase conserved
PP_4909 -4.7 -11.9 phosphoserine phosphatase compare
PP_4679 -4.7 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -4.6 -11.5 Histidinol dehydrogenase compare
PP_1088 -4.6 -15.5 Argininosuccinate synthase compare
PP_5015 -4.5 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0292 -4.5 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -4.4 -6.6 Imidazoleglycerol-phosphate dehydratase compare
PP_5155 -4.2 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5128 -4.2 -8.7 Dihydroxy-acid dehydratase compare
PP_0082 -4.2 -8.4 tryptophan synthase alpha chain compare
PP_2371 -4.2 -8.4 Sulphite reductase hemoprotein, beta subunit compare
PP_5289 -4.0 -6.7 Acetylglutamate kinase compare
PP_1995 -4.0 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3999 -4.0 -11.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4999 -3.8 -2.6 dihydroorotase-like protein compare
PP_5098 -3.8 -11.8 methionine biosynthesis protein MetW compare
PP_0735 -3.8 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_5097 -3.7 -17.1 homoserine O-acetyltransferase compare
PP_0420 -3.7 -12.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1664 -3.6 -7.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1025 -3.6 -11.4 2-isopropylmalate synthase compare
PP_0422 -3.6 -8.1 Indole-3-glycerol phosphate synthase compare
PP_2001 -3.4 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_0888 -3.3 -3.2 Photosynthetic apparatus regulatory protein RegA compare
PP_5095 -3.3 -3.1 pyrroline-5-carboxylate reductase compare
PP_0421 -3.2 -8.6 Anthranilate phosphoribosyltransferase compare
PP_2327 -3.2 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2328 -3.1 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_1237 -3.1 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0417 -3.1 -16.3 Anthranilate synthase component 1 compare
PP_4696 -3.0 -4.1 Nitrogen regulation protein NR(I) compare
PP_5014 -3.0 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5303 -3.0 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4699 -2.9 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1109 -2.9 -13.8 Transcriptional regulator, GntR family compare
PP_0393 -2.8 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4943 -2.8 -2.7 putative Glycosyl transferase compare
PP_1111 -2.7 -8.6 putative Synthetase compare
PP_2388 -2.6 -5.3 Transporter, LysE family compare
PP_0787 -2.5 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3248 -2.5 -2.4 Dyp-type peroxidase family protein compare
PP_5347 -2.4 -12.6 pyruvate carboxylase subunit A compare
PP_1233 -2.4 -8.2 sulfurtransferase compare
PP_5085 -2.4 -6.8 malic enzyme B compare
PP_2370 -2.4 -2.0 conserved protein of unknown function compare
PP_0063 -2.3 -3.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0164 -2.3 -8.5 conserved protein of unknown function compare
PP_4693 -2.2 -6.5 RNA polymerase-binding transcription factor DksA compare
PP_3790 -2.2 -8.9 diaminopimelate epimerase compare
PP_0856 -2.1 -1.5 conserved lipoprotein of unknown function compare
PP_1110 -2.1 -2.2 serine acetyltransferase compare
PP_2000 -2.1 -3.4 amidophosphoribosyl transferase compare
PP_5309 -2.0 -1.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4782 -1.9 -5.4 Phosphomethylpyrimidine kinase compare
PP_5346 -1.9 -7.9 pyruvate carboxylase subunit B compare
PP_5028 -1.9 -3.6 proline iminopeptidase compare
PP_5227 -1.9 -8.4 diaminopimelate decarboxylase compare
PP_4129 -1.9 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1353 -1.9 -2.5 conserved membrane protein of unknown function compare
PP_1186 -1.8 -2.7 two component system DNA-binding transcriptional dual regulator compare
PP_4799 -1.8 -4.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5007 -1.8 -3.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4120 -1.8 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_3903 -1.7 -2.8 conserved protein of unknown function compare
PP_2356 -1.7 -8.9 putative Phytochrome family protein compare
PP_t29 -1.7 -3.0 tRNA-Ala compare
PP_5348 -1.7 -8.1 Transcriptional regulator, LysR family compare
PP_1097 -1.6 -2.0 Methionine--tRNA ligase compare
PP_1654 -1.6 -3.1 cysteine synthase B compare
PP_1589 -1.6 -7.5 uridylyltransferase compare
PP_3098 -1.6 -1.4 conserved protein of unknown function compare
PP_0370 -1.5 -11.2 Acyl-CoA dehydrogenase family protein compare
PP_1231 -1.5 -5.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4126 -1.5 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_5104 -1.5 -6.8 thiazole synthase compare
PP_1629 -1.4 -4.8 Protein RecA compare
PP_1912 -1.4 -3.4 Phosphate acyltransferase compare
PP_4917 -1.4 -3.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1689 -1.3 -9.4 putative Long-chain fatty acid transporter compare
PP_2390 -1.3 -6.3 Transcriptional regulator, LysR family compare
PP_2087 -1.3 -2.4 CmpX protein compare
PP_2307 -1.3 -2.9 conserved protein of unknown function compare
PP_4124 -1.3 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_2302 -1.3 -4.5 DNA-binding, ATP-dependent protease compare
PP_0291 -1.3 -1.5 conserved protein of unknown function compare
PP_4922 -1.3 -7.9 Phosphomethylpyrimidine synthase compare
PP_1734 -1.3 -2.8 Probable septum site-determining protein MinC compare
PP_2354 -1.3 -7.5 Sensory box histidine kinase/response regulator compare
PP_2402 -1.2 -2.8 putative Sensor histidine kinase compare
PP_5701 -1.2 -1.6 conserved protein of unknown function compare
PP_5035 -1.2 -5.2 Histidine utilization repressor compare
PP_4940 -1.2 -5.8 Putative glycosyltransferase compare
PP_5198 -1.2 -2.3 conserved protein of unknown function compare
PP_1826 -1.2 -2.1 Hydrolase, isochorismatase family compare
PP_0065 -1.2 -2.1 NAD-binding component of TrK potassium transporter compare
PP_1304 -1.2 -6.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2475 -1.2 -3.6 Transcriptional regulator, TetR family compare
PP_4546 -1.2 -3.0 ATP-dependent helicase HrpA compare
PP_4098 -1.2 -1.8 UvrABC system protein C compare
PP_3312 -1.2 -2.1 putative Heat shock protein compare
PP_1764 -1.2 -6.8 Phosphoglycolate phosphatase 2 compare
PP_4121 -1.1 -3.6 NADH-quinone oxidoreductase subunit C/D compare
PP_2720 -1.1 -1.6 conserved protein of unknown function compare
PP_0364 -1.1 -4.6 pimeloyl-[acp] methyl ester esterase compare
PP_3821 -1.1 -6.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2378 -1.1 -1.9 Fe/S biogenesis protein NfuA compare
PP_5628 -1.1 -3.2 conserved protein of unknown function compare
PP_5338 -1.1 -2.4 aspartate ammonia-lyase compare
PP_1216 -1.1 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5313 -1.1 -3.0 DNA-binding protein HU-alpha compare
PP_4122 -1.1 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3102 -1.1 -3.0 conserved protein of unknown function compare
PP_5352 -1.0 -6.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1214 -1.0 -1.4 putative transcriptional regulatory protein compare
PP_5054 -1.0 -1.5 glutaredoxin 3 compare
PP_5114 -1.0 -1.5 putative adenine methyltransferase compare
PP_1303 -1.0 -5.3 Sulfate adenylyltransferase subunit 2 compare
PP_0362 -1.0 -7.1 Biotin synthase compare
PP_4824 -1.0 -3.6 Sensor histidine kinase/response regulator compare
PP_1428 -1.0 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_2433 -0.9 -1.9 conserved protein of unknown function compare
PP_2520 -0.9 -2.4 conserved protein of unknown function compare
PP_4988 -0.9 -4.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1176 -0.9 -1.2 conserved protein of unknown function compare
PP_4964 -0.9 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1426 -0.9 -6.3 L-aspartate oxidase compare
PP_3505 -0.9 -1.8 conserved protein of unknown function compare
PP_0435 -0.9 -7.9 Peptidase, M23/M37 family compare
PP_3787 -0.9 -5.3 conserved protein of unknown function compare
PP_4131 -0.9 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_5048 -0.9 -4.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5681 -0.9 -3.5 conserved protein of unknown function compare
PP_3539 -0.9 -2.6 putative Transcriptional regulator compare
PP_1063 -0.8 -4.4 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_5712 -0.8 -2.1 conserved protein of unknown function compare
PP_2903 -0.8 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1348 -0.8 -4.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3378 -0.8 -1.9 putative 2-ketogluconokinase compare
PP_4910 -0.8 -2.0 conserved protein of unknown function compare
PP_3766 -0.8 -2.6 Lactoylglutathione lyase compare
PP_1994 -0.8 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0363 -0.8 -5.9 8-amino-7-oxononanoate synthase compare
PP_0401 -0.8 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_3798 -0.8 -3.3 conserved protein of unknown function compare
PP_0261 -0.8 -3.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2336 -0.8 -1.7 aconitate hydratase 1 compare
PP_3590 -0.8 -3.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0406 -0.8 -4.4 Nucleotidyltransferase family protein compare
PP_1917 -0.8 -3.6 4-amino-4-deoxychorismate lyase compare
PP_1609 -0.8 -1.8 conserved protein of unknown function compare
PP_4493 -0.8 -6.0 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_1605 -0.8 -1.9 Ribonuclease HII compare
PP_5310 -0.8 -2.9 junction-specific ATP-dependent DNA helicase compare
PP_4482 -0.8 -2.3 Transcriptional regulator, AraC family compare
PP_0218 -0.8 -4.6 Sensory box protein compare
PP_5621 -0.8 -1.6 protein of unknown function compare
PP_3789 -0.8 -3.6 putative Efflux transporter compare
PP_3788 -0.8 -4.5 putative Non-ribosomal peptide synthetase compare
PP_3833 -0.8 -3.0 Response regulator compare
PP_0434 -0.7 -5.7 Anhydro-N-acetylmuramic acid kinase compare
PP_2084 -0.7 -3.4 Putative regulator of ribonuclease activity compare
PP_1322 -0.7 -1.3 putative Lipoprotein compare
PP_4503 -0.7 -2.0 DNA-binding response regulator compare
PP_4684 -0.7 -3.6 conserved protein of unknown function with kinase-like domain compare
PP_0833 -0.7 -1.5 queuine tRNA-ribosyltransferase compare
PP_5705 -0.7 -2.2 protein of unknown function compare
PP_2513 -0.7 -1.9 4-oxalomesaconate tautomerase compare
PP_5747 -0.7 -3.9 pyridine nucleotide transhydrogenase subunit alpha compare
PP_0365 -0.7 -5.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1968 -0.7 -3.2 TetR family transcriptional regulator compare
PP_1210 -0.7 -3.3 DNA-binding stress protein compare
PP_5279 -0.7 -2.0 conserved protein of unknown function compare
PP_3649 -0.7 -2.5 Transcriptional regulator, GntR family compare
PP_3946 -0.7 -0.9 HTH-type transcriptional repressor NicR compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Myristic acid in Pseudomonas putida KT2440

For carbon source Myristic acid across organisms