Experiment set15IT078 for Pseudomonas putida KT2440

Compare to:

Myristic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_4171 +2.4 18.1 conserved exported protein of unknown function compare
PP_1623 +2.1 15.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_5145 +2.0 19.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1113 +2.0 13.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4172 +1.6 8.5 conserved exported protein of unknown function compare
PP_0948 +1.5 6.8 Phosphocarrier protein HPr compare
PP_5232 +1.5 6.4 conserved protein of unknown function compare
PP_2889 +1.5 4.2 putative Transmembrane regulator PrtR compare
PP_1655 +1.5 5.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2581 +1.4 3.3 conserved protein of unknown function compare
PP_0168 +1.4 13.0 putative surface adhesion protein compare
PP_4519 +1.4 12.1 Agglutination protein compare
PP_4271 +1.3 1.6 conserved protein of unknown function compare
PP_0166 +1.3 11.0 HlyD family secretion protein compare
PP_4173 +1.2 5.7 Sensor histidine kinase/response regulator compare
PP_0167 +1.2 11.7 Toxin secretion ATP-binding protein compare
PP_2387 +1.2 5.7 conserved protein of unknown function compare
PP_1650 +1.2 10.3 Sensor protein GacS compare
PP_1656 +1.1 5.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0165 +1.1 10.2 GGDEF domain protein compare
PP_5053 +1.0 4.8 Protein-export protein SecB compare
PP_1562 +1.0 3.0 putative Phage terminase, small subunit compare
PP_4099 +1.0 9.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4265 +1.0 3.8 DNA-binding transcriptional dual regulator compare
PP_5003 +0.9 6.3 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_2144 +0.9 2.8 Transcriptional regulator, TetR family compare
PP_5146 +0.9 4.5 RNA pyrophosphohydrolase compare
PP_4217 +0.9 8.1 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4227 +0.8 2.2 conserved protein of unknown function compare
PP_2899 +0.8 0.8 conserved exported protein of unknown function compare
PP_4994 +0.8 4.3 conserved protein of unknown function compare
PP_4561 +0.8 1.4 stress response protein compare
PP_0673 +0.8 2.4 conserved protein of unknown function compare
PP_2061 +0.8 3.8 conserved protein of unknown function compare
PP_5714 +0.8 2.7 conserved protein of unknown function compare
PP_1122 +0.8 1.1 OmpA family protein compare
PP_3831 +0.8 3.0 conserved protein of unknown function compare
PP_4532 +0.8 1.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1410 +0.7 1.5 conserved protein of unknown function compare
PP_4817 +0.7 4.6 MaoC domain protein compare
PP_3052 +0.7 1.3 conserved protein of unknown function compare
PP_4808 +0.7 2.2 23S rRNA m3psi1915 methyltransferase compare
PP_4373 +0.7 5.7 Transcriptional regulator FleQ compare
PP_1112 +0.7 3.5 conserved membrane protein of unknown function compare
PP_3239 +0.7 2.5 putative cointegrate resolution protein T Tn4652 compare
PP_0593 +0.7 0.9 putative ribosome-binding factor compare
PP_4835 +0.7 1.1 conserved exported protein of unknown function compare
PP_0674 +0.7 5.3 ADP/ATP ratio sensor and inhibitor of translation compare
PP_3365 +0.7 1.4 Acetolactate synthase compare
PP_4504 +0.7 1.1 conserved exported protein of unknown function compare
PP_5039 +0.7 2.3 conserved protein of unknown function compare
PP_2132 +0.7 2.4 Universal stress protein compare
PP_1778 +0.7 3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_4340 +0.6 2.5 response regulator for chemotactic signal transduction compare
PP_3551 +0.6 0.9 DNA-binding response regulator, LuxR family compare
PP_0770 +0.6 3.3 PemI-like protein compare
PP_5453 +0.6 1.1 conserved protein of unknown function compare
PP_5508 +0.6 1.1 conserved protein of unknown function compare
PP_0643 +0.6 1.8 protein of unknown function compare
PP_4593 +0.6 1.6 conserved protein of unknown function compare
PP_5006 +0.6 4.1 Transcriptional regulator, TetR family compare
PP_5580 +0.6 1.3 protein of unknown function compare
PP_0240 +0.6 1.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2747 +0.6 1.3 conserved protein of unknown function compare
PP_4720 +0.6 1.9 putative RNA binding protein compare
PP_4100 +0.6 2.0 Transcriptional regulator, Cro/CI family compare
PP_4707 +0.6 2.3 OsmY-related protein compare
PP_0547 +0.6 2.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4710 +0.6 4.6 tRNA pseudouridine 55 synthase compare
PP_0407 +0.6 2.9 DnaJ-like protein DjlA compare
PP_2675 +0.6 1.6 Cytochrome c-type protein compare
PP_3799 +0.6 2.8 conserved exported protein of unknown function compare
PP_3837 +0.6 2.0 inner membrane protein of unknown function compare
PP_5597 +0.6 1.5 conserved protein of unknown function compare
PP_2150 +0.6 2.1 putative Thiamine biosynthesis lipoprotein compare
PP_5469 +0.6 2.3 putative SAM-dependent methyltransferase compare
PP_1987 +0.6 1.6 Methlytransferase, UbiE/COQ5 family compare
PP_1381 +0.6 0.9 4-carboxymuconolactone decarboxylase compare
PP_5005 +0.6 4.1 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4363 +0.6 4.2 Sensor histidine kinase/response regulator compare
PP_4785 +0.6 3.8 conserved exported protein of unknown function compare
PP_1352 +0.6 1.2 UPF0234 protein PP_1352 compare
PP_t49 +0.6 2.7 tRNA-Met compare
PP_4296 +0.6 0.6 conserved exported protein of unknown function compare
PP_2568 +0.6 0.9 Ring-cleaving dioxygenase compare
PP_0319 +0.6 1.4 conserved protein of unknown function compare
PP_3730 +0.5 0.6 Transcriptional regulatory protein AruR compare
PP_5201 +0.5 0.8 conserved protein of unknown function, UPF0149 family compare
PP_1697 +0.5 1.3 transcriptional regulator, GntR family compare
PP_2814 +0.5 1.9 conserved protein of unknown function compare
PP_2459 +0.5 1.4 ribose pyranase compare
PP_3651 +0.5 4.3 Sensor histidine kinase/response regulator compare
PP_5644 +0.5 1.5 conserved membrane protein of unknown function compare
PP_0803 +0.5 3.7 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1004 +0.5 1.6 conserved protein of unknown function compare
PP_2718 +0.5 1.5 arsenic resistance transcriptional regulator compare
PP_1729 +0.5 1.0 conserved protein of unknown function compare
PP_0806 +0.5 5.0 putative Surface adhesion protein compare
PP_5176 +0.5 2.0 conserved protein of unknown function compare
PP_2098 +0.5 3.4 D-alanyl-D-alanine carboxypeptidase compare
PP_3814 +0.5 2.2 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_1716 +0.5 0.9 Transcriptional regulator, Cro/CI family compare
PP_5429 +0.5 2.9 protein of unknown function compare
PP_3923 +0.5 2.3 Phosphoglycerate mutase compare
PP_0001 +0.5 1.7 probable chromosome-partitioning protein compare
PP_5093 +0.5 1.1 twitching motility protein compare
PP_5225 +0.5 1.2 frataxin compare
PP_5735 +0.5 2.3 conserved hypothetical protein compare
PP_4462 +0.5 2.8 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PP_0355 +0.5 2.1 Response regulator compare
PP_0276 +0.5 0.9 Transcriptional regulator, Cro/CI family compare
PP_5106 +0.5 1.9 conserved inner membrane protein compare
PP_0185 +0.5 3.6 Positive alginate biosynthesis regulatory protein compare
PP_4329 +0.5 1.1 FlhB domain protein compare
PP_0916 +0.5 2.0 Amino acid transporter LysE compare
PP_2712 +0.5 2.1 conserved exported protein of unknown function compare
PP_5274 +0.5 1.7 conserved protein of unknown function compare
PP_0513 +0.5 1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5572 +0.5 1.7 protein of unknown function compare
PP_3810 +0.5 1.7 conserved protein of unknown function compare
PP_3672 +0.5 1.7 conserved protein of unknown function compare
PP_0775 +0.5 1.4 conserved protein of unknown function compare
PP_1546 +0.5 2.8 conserved protein of unknown function compare
PP_1020 +0.5 2.0 putative glucose-6-phosphate 1-epimerase compare
PP_2009 +0.5 2.4 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_3637 +0.5 1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0685 +0.5 1.1 conserved protein of unknown function compare
PP_0574 +0.5 3.5 DNA-binding response regulator, LuxR family compare
PP_2672 +0.5 3.1 Transcriptional activator protein ExaE compare
PP_4208 +0.5 3.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0152 +0.5 0.8 conserved exported protein of unknown function compare
PP_1560 +0.5 2.9 conserved protein of unknown function compare
PP_0805 +0.5 3.5 Outer membrane efflux protein compare
PP_5393 +0.5 1.1 putative metal-binding chaperone compare
PP_5546 +0.5 1.6 conserved protein of unknown function compare
PP_4669 +0.4 1.2 OmpA family protein compare
PP_5448 +0.4 2.3 conserved protein of unknown function compare
PP_4109 +0.4 1.1 conserved protein of unknown function compare
PP_5486 +0.4 1.6 conserved protein of unknown function compare
PP_0821 +0.4 1.7 conserved exported protein of unknown function compare
PP_2197 +0.4 2.3 conserved exported protein of unknown function compare
PP_2845 +0.4 1.4 urease subunit alpha compare
PP_5066 +0.4 2.1 K(+)/H(+) antiporter NhaP2 compare
PP_4499 +0.4 1.4 putative maturation enzyme compare
PP_0846 +0.4 0.9 DnaK-like molecular chaperone specific for IscU compare
PP_0925 +0.4 2.3 conserved protein of unknown function compare
PP_3035 +0.4 1.5 conserved protein of unknown function compare
PP_4874 +0.4 0.5 50S ribosomal protein L9 compare
PP_2939 +0.4 2.3 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_4464 +0.4 2.3 Transcriptional regulator, LysR family compare
PP_0761 +0.4 2.5 Ribosomal RNA small subunit methyltransferase C compare
PP_3205 +0.4 1.6 Fumarylacetoacetate hydrolase family protein compare
PP_5430 +0.4 1.2 protein of unknown function compare
PP_0893 +0.4 0.9 ThiJ/PfpI family protein compare
PP_2172 +0.4 1.5 conserved exported protein of unknown function compare
PP_2437 +0.4 2.3 putative Acyl-CoA dehydrogenase compare
PP_2826 +0.4 1.5 Transcriptional regulator MexT compare
PP_5255 +0.4 1.5 putative hydrolase compare
PP_2597 +0.4 1.4 conserved protein of unknown function compare
PP_3892 +0.4 0.9 conserved protein of unknown function compare
PP_5110 +0.4 1.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2385 +0.4 2.5 Branched-chain amino acid transport protein AzlC compare
PP_2323 +0.4 3.1 conserved protein of unknown function compare
PP_4837 +0.4 1.4 conserved protein of unknown function compare
PP_0058 +0.4 3.9 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_2765 +0.4 0.5 putative Sulfonate monooxygenase MsuD compare
PP_3846 +0.4 2.3 (R)-stereoselective amidase compare
PP_2050 +0.4 1.6 conserved protein of unknown function compare
PP_2160 +0.4 1.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2429 +0.4 1.1 putative Membrane protein compare
PP_5689 +0.4 2.3 conserved protein of unknown function compare
PP_0959 +0.4 0.8 phospholipid ABC transporter compare
PP_3238 +0.4 1.5 putative Transcriptional regulator PyrR compare
PP_5667 +0.4 1.1 putative microcin B17-like-processing protein, McbC family compare
PP_1386 +0.4 2.8 Probable efflux pump periplasmic linker TtgA compare
PP_3797 +0.4 1.9 conserved membrane protein of unknown function compare
PP_0903 +0.4 2.1 conserved protein of unknown function compare
PP_4901 +0.4 1.8 conserved inner membrane protein compare
PP_3614 +0.4 0.9 conserved membrane protein of unknown function compare
PP_5248 +0.4 0.7 putative hydrolase compare
PP_3524 +0.4 1.7 conserved protein of unknown function compare
PP_2946 +0.4 1.2 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_3805 +0.4 2.3 lipoprotein required for swarming compare
PP_3546 +0.4 2.4 Sensory box histidine kinase/response regulator compare
PP_5298 +0.4 1.1 putative glutamine amidotransferase compare
PP_3254 +0.4 1.5 putative Nucleosidase compare
PP_2575 +0.4 1.2 conserved exported protein of unknown function compare
PP_3036 +0.4 0.9 conserved protein of unknown function compare
PP_1566 +0.4 1.6 Peptidase U35 compare
PP_5542 +0.4 1.4 protein of unknown function compare
PP_5693 +0.4 2.5 conserved protein of unknown function compare
PP_1215 +0.4 0.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_2833 +0.4 1.6 Transcriptional regulator, LysR family compare
PP_0801 +0.4 0.7 conserved exported protein of unknown function compare
PP_4734 +0.4 2.2 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0781 +0.4 1.2 conserved protein of unknown function compare
PP_4136 +0.4 0.8 Transcriptional regulator, LuxR family compare
PP_3605 +0.4 2.5 Transcriptional regulator, LysR family compare
PP_0563 +0.4 2.6 Response regulator compare
PP_0772 +0.4 1.9 Metallo-beta-lactamase family protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Myristic acid in Pseudomonas putida KT2440

For carbon source Myristic acid across organisms