Experiment set15IT077 for Pseudomonas putida KT2440

Compare to:

Tween 20 carbon source

200 most important genes:

  gene name fitness t score description  
PP_2903 -7.0 -2.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1208 -6.7 -2.5 conserved protein of unknown function, SlyX family compare
PP_0293 -6.4 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2137 -6.1 -2.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_2136 -6.1 -4.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0291 -5.8 -3.5 conserved protein of unknown function compare
PP_0086 -5.5 -2.8 conserved protein of unknown function compare
PP_0082 -5.5 -3.8 tryptophan synthase alpha chain compare
PP_0083 -5.5 -3.8 tryptophan synthase beta chain compare
PP_1988 -5.4 -9.6 3-isopropylmalate dehydrogenase compare
PP_4701 -5.4 -1.2 glucose-6-phosphate isomerase compare
PP_5533 -5.3 -1.1 conserved protein of unknown function compare
PP_3519 -5.3 -1.1 putative Lipoprotein compare
PP_0001 -5.3 -2.3 probable chromosome-partitioning protein compare
PP_2568 -5.2 -1.1 Ring-cleaving dioxygenase compare
PP_5185 -5.2 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4724 -5.1 -6.3 Carbamoyl-phosphate synthase small chain compare
PP_4909 -5.1 -9.2 phosphoserine phosphatase compare
PP_4678 -5.0 -12.2 Ketol-acid reductoisomerase compare
PP_t12 -4.8 -1.0 tRNA-Thr compare
PP_2019 -4.5 -12.4 adhesin-associated MmpL efflux pump (from data) conserved
PP_1493 -4.5 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4116 -4.4 -7.8 isocitrate lyase compare
PP_0966 -4.4 -7.3 Histidinol dehydrogenase compare
PP_0691 -4.4 -4.6 Glutamate 5-kinase compare
PP_3926 -4.3 -1.3 short-chain dehydrogenase compare
PP_0356 -4.3 -6.7 malate synthase G compare
PP_1985 -4.3 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_4723 -4.2 -10.5 Carbamoyl-phosphate synthase large chain compare
PP_1654 -4.2 -2.9 cysteine synthase B compare
PP_4593 -4.1 -1.2 conserved protein of unknown function compare
PP_1995 -4.0 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -4.0 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4680 -4.0 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2018 -4.0 -4.2 adhesin-associated BNR repeat protein (from data) compare
PP_4136 -4.0 -1.2 Transcriptional regulator, LuxR family compare
PP_0289 -3.9 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -3.9 -5.8 Argininosuccinate lyase compare
PP_1079 -3.9 -4.6 Ornithine carbamoyltransferase compare
PP_0164 -3.8 -6.1 conserved protein of unknown function compare
PP_0765 -3.7 -10.9 putative adhesin (DUF1302) (from data) conserved
PP_5054 -3.7 -1.9 glutaredoxin 3 compare
PP_1088 -3.7 -8.0 Argininosuccinate synthase compare
PP_5128 -3.7 -5.9 Dihydroxy-acid dehydratase compare
PP_3946 -3.6 -1.1 HTH-type transcriptional repressor NicR compare
PP_4271 -3.6 -0.8 conserved protein of unknown function compare
PP_0368 -3.5 -6.7 putative Acyl-CoA dehydrogenase compare
PP_4999 -3.5 -1.7 dihydroorotase-like protein compare
PP_0766 -3.5 -9.9 adhesin-associated sorting protein (DUF1329) (from data) conserved
PP_4549 -3.5 -7.9 long-chain-fatty-acid/CoA ligase conserved
PP_0967 -3.4 -5.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0965 -3.3 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5346 -3.2 -5.8 pyruvate carboxylase subunit B compare
PP_5456 -3.2 -1.3 conserved protein of unknown function compare
PP_4699 -3.2 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5347 -3.1 -7.8 pyruvate carboxylase subunit A compare
PP_4696 -3.1 -2.2 Nitrogen regulation protein NR(I) compare
PP_2087 -3.1 -3.0 CmpX protein compare
PP_4799 -3.1 -4.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2371 -3.1 -4.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5052 -3.1 -1.8 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0292 -3.1 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1528 -3.0 -0.9 conserved protein of unknown function compare
PP_1045 -2.9 -1.7 Type II secretion pathway protein XcpP compare
PP_4700 -2.9 -3.5 pantothenate synthetase compare
PP_0833 -2.8 -1.7 queuine tRNA-ribosyltransferase compare
PP_2370 -2.8 -1.9 conserved protein of unknown function compare
PP_0685 -2.8 -1.9 conserved protein of unknown function compare
PP_3726 -2.8 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_0290 -2.6 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3248 -2.6 -1.7 Dyp-type peroxidase family protein compare
PP_2000 -2.6 -3.0 amidophosphoribosyl transferase compare
PP_0855 -2.6 -1.3 conserved protein of unknown function compare
PP_0914 -2.6 -6.2 GGDEF domain protein compare
PP_5289 -2.6 -2.8 Acetylglutamate kinase compare
PP_4120 -2.5 -1.7 NADH-quinone oxidoreductase subunit B compare
PP_1912 -2.5 -3.2 Phosphate acyltransferase compare
PP_3511 -2.4 -3.9 Branched-chain-amino-acid aminotransferase compare
PP_1216 -2.4 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0767 -2.4 -5.7 Transcriptional regulator, LuxR family conserved
PP_2307 -2.3 -2.5 conserved protein of unknown function compare
PP_1181 -2.3 -2.7 DNA-binding response regulator compare
PP_3999 -2.2 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4890 -2.2 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_5348 -2.2 -4.7 Transcriptional regulator, LysR family compare
PP_0422 -2.1 -2.6 Indole-3-glycerol phosphate synthase compare
PP_2540 -2.1 -2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4964 -2.1 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_0236 -2.1 -1.4 NAD(P)H-dependent FMN reductase subunit compare
PP_4993 -2.1 -4.3 Glutathione synthetase compare
PP_5225 -2.0 -1.3 frataxin compare
PP_0420 -2.0 -4.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4121 -2.0 -5.4 NADH-quinone oxidoreductase subunit C/D compare
PP_2142 -2.0 -1.5 Cell division inhibitor SulA compare
PP_1110 -2.0 -2.8 serine acetyltransferase compare
PP_2337 -2.0 -1.9 aconitate isomerase compare
PP_5475 -2.0 -1.3 conserved protein of unknown function compare
PP_4126 -1.9 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_4143 -1.9 -2.9 conserved protein of unknown function compare
PP_2390 -1.9 -4.0 Transcriptional regulator, LysR family compare
PP_1268 -1.9 -1.8 putative HtrA suppressor protein sohA compare
PP_5114 -1.9 -2.0 putative adenine methyltransferase compare
PP_3447 -1.9 -1.3 conserved membrane protein of unknown function compare
PP_5253 -1.9 -2.5 Arylesterase compare
PP_2414 -1.9 -1.4 conserved exported protein of unknown function compare
PP_4129 -1.9 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1826 -1.9 -2.0 Hydrolase, isochorismatase family compare
PP_2503 -1.9 -2.1 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2029 -1.9 -1.2 von Willebrand factor type A domain protein compare
PP_0856 -1.8 -1.2 conserved lipoprotein of unknown function compare
PP_0417 -1.8 -7.2 Anthranilate synthase component 1 compare
PP_1231 -1.8 -2.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0421 -1.8 -3.8 Anthranilate phosphoribosyltransferase compare
PP_2631 -1.8 -1.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1664 -1.8 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4332 -1.8 -2.1 Chemotaxis protein CheW compare
PP_4679 -1.8 -2.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0401 -1.7 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_5155 -1.7 -2.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1142 -1.7 -1.1 conserved protein of unknown function compare
PP_5035 -1.7 -2.7 Histidine utilization repressor compare
PP_4937 -1.7 -2.1 toluene tolerance protein compare
PP_5198 -1.7 -2.5 conserved protein of unknown function compare
PP_2327 -1.7 -3.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4734 -1.7 -2.8 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_5568 -1.7 -2.0 conserved membrane protein of unknown function compare
PP_5059 -1.7 -2.2 conserved exported protein of unknown function compare
PP_3487 -1.7 -1.9 conserved exported protein of unknown function compare
PP_0585 -1.7 -1.3 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2153 -1.7 -1.3 conserved protein of unknown function compare
PP_5309 -1.6 -1.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2999 -1.6 -1.1 Glyoxalase family protein compare
PP_3484 -1.6 -2.1 Response regulator receiver protein compare
PP_1763 -1.6 -3.2 putative oxidoreductase compare
PP_0848 -1.6 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4988 -1.6 -7.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0653 -1.6 -1.2 conserved protein of unknown function compare
PP_2274 -1.6 -2.8 conserved protein of unknown function compare
PP_2575 -1.6 -1.8 conserved exported protein of unknown function compare
PP_2336 -1.6 -2.1 aconitate hydratase 1 compare
PP_1935 -1.6 -1.0 Transcriptional regulator, Cro/CI family compare
PP_1025 -1.6 -5.8 2-isopropylmalate synthase compare
PP_3766 -1.6 -2.7 Lactoylglutathione lyase compare
PP_1941 -1.5 -2.0 conserved protein of unknown function compare
PP_4609 -1.5 -2.8 conserved membrane protein of unknown function compare
PP_4693 -1.5 -3.6 RNA polymerase-binding transcription factor DksA compare
PP_1237 -1.5 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1111 -1.5 -4.1 putative Synthetase compare
PP_5352 -1.5 -6.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2665 -1.5 -1.7 Glycerol metabolism activator compare
PP_0393 -1.5 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1428 -1.5 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_1589 -1.5 -3.3 uridylyltransferase compare
PP_1026 -1.5 -1.9 Peptidase, M23/M37 family compare
PP_5014 -1.4 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4569 -1.4 -1.4 conserved protein of unknown function compare
PP_4387 -1.4 -1.5 conserved exported protein of unknown function compare
PP_3880 -1.4 -1.1 conserved exported protein of unknown function compare
PP_3460 -1.4 -1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2439 -1.4 -2.0 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_3411 -1.4 -0.8 conserved protein of unknown function compare
PP_1353 -1.4 -1.6 conserved membrane protein of unknown function compare
PP_4470 -1.4 -2.0 putative transcriptional regulator (Arc domain-containing) compare
PP_1598 -1.4 -1.8 regulatory intramembrane protein RIP zinc protease compare
PP_0370 -1.4 -5.4 Acyl-CoA dehydrogenase family protein conserved
PP_0424 -1.4 -1.5 DNA-binding transcriptional dual regulator compare
PP_1109 -1.4 -6.1 Transcriptional regulator, GntR family compare
PP_3914 -1.4 -2.4 conserved protein of unknown function compare
PP_1182 -1.4 -4.8 Sensor histidine kinase compare
PP_2001 -1.4 -3.7 O-succinylhomoserine sulfhydrylase compare
PP_4124 -1.3 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_1635 -1.3 -1.7 DNA-binding response regulator compare
PP_0959 -1.3 -0.9 phospholipid ABC transporter compare
PP_0153 -1.3 -0.9 hypothetical protein compare
PP_0692 -1.3 -3.2 conserved protein of unknown function compare
PP_2328 -1.3 -2.5 Phosphoadenosine phosphosulfate reductase compare
PP_0007 -1.3 -1.4 conserved hypothetical protein compare
PP_0206 -1.3 -1.3 Ferredoxin, 4Fe-4S compare
PP_5095 -1.3 -0.9 pyrroline-5-carboxylate reductase compare
PP_5127 -1.3 -3.6 ribosomal RNA large subunit methyltransferase I compare
PP_4981 -1.3 -1.1 polyisoprene-binding protein, acidic stress response factor compare
PP_0002 -1.3 -3.6 probable chromosome partition protein compare
PP_5473 -1.3 -1.1 putative transcriptional regulator, LuxR family compare
PP_4797 -1.3 -1.8 conserved protein of unknown function compare
PP_0065 -1.3 -1.8 NAD-binding component of TrK potassium transporter compare
PP_2429 -1.3 -1.2 putative Membrane protein compare
PP_0063 -1.3 -2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2773 -1.2 -1.1 conserved protein of unknown function compare
PP_0962 -1.2 -0.9 toluene-tolerance protein compare
PP_4471 -1.2 -2.0 Magnesium transporter compare
PP_4350 -1.2 -1.5 Aminotransferase, class V, NifS/IscS family compare
PP_2624 -1.2 -1.5 conserved protein of unknown function compare
PP_5571 -1.2 -0.9 conserved protein of unknown function compare
PP_0979 -1.2 -1.3 DNA polymerase III subunit chi compare
PP_1036 -1.2 -3.4 membrane-bound lytic murein transglycosylase F compare
PP_3481 -1.2 -1.0 conserved exported protein of unknown function compare
PP_5303 -1.2 -2.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4131 -1.2 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_5659 -1.2 -1.5 protein of unknown function compare
PP_3930 -1.2 -1.2 conserved exported protein of unknown function compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Tween 20 in Pseudomonas putida KT2440

For carbon source Tween 20 across organisms