Experiment set15IT076 for Pseudomonas putida KT2440

Compare to:

Nonanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_5145 +2.0 17.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0948 +1.9 8.8 Phosphocarrier protein HPr compare
PP_1623 +1.9 14.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_1113 +1.8 14.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5053 +1.7 6.5 Protein-export protein SecB compare
PP_4171 +1.7 12.1 conserved exported protein of unknown function compare
PP_4961 +1.6 1.9 putative Lipoprotein compare
PP_5003 +1.6 11.8 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_1650 +1.5 12.3 Sensor protein GacS compare
PP_1655 +1.5 6.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0547 +1.4 4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4099 +1.4 11.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2387 +1.4 5.9 conserved protein of unknown function compare
PP_4804 +1.3 4.7 RlpA-like lipoprotein compare
PP_2889 +1.3 3.7 putative Transmembrane regulator PrtR compare
PP_5232 +1.2 3.3 conserved protein of unknown function compare
PP_5005 +1.2 7.9 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_1224 +1.1 5.9 periplasmic subunit of the TolQRA transport system compare
PP_0232 +1.1 1.8 ATP-binding taurine transporter subunit compare
PP_4217 +1.0 9.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4504 +1.0 1.8 conserved exported protein of unknown function compare
PP_1898 +1.0 3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_4227 +0.9 1.4 conserved protein of unknown function compare
PP_5006 +0.9 5.6 Transcriptional regulator, TetR family compare
PP_4817 +0.9 4.1 MaoC domain protein compare
PP_1779 +0.9 4.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5430 +0.9 3.2 protein of unknown function compare
PP_4994 +0.9 3.1 conserved protein of unknown function compare
PP_0168 +0.9 8.1 putative surface adhesion protein compare
PP_5146 +0.9 4.2 RNA pyrophosphohydrolase compare
PP_5106 +0.8 2.3 conserved inner membrane protein compare
PP_t64 +0.8 2.5 tRNA-Gly compare
PP_4519 +0.8 7.2 Agglutination protein compare
PP_4785 +0.8 5.6 conserved exported protein of unknown function compare
PP_0319 +0.8 2.1 conserved protein of unknown function compare
PP_3840 +0.8 1.6 conserved protein of unknown function compare
PP_1528 +0.8 0.8 conserved protein of unknown function compare
PP_2581 +0.8 1.5 conserved protein of unknown function compare
PP_0138 +0.8 5.2 conserved membrane protein of unknown function compare
PP_2720 +0.8 1.6 conserved protein of unknown function compare
PP_4172 +0.8 4.4 conserved exported protein of unknown function compare
PP_1778 +0.8 3.5 Lipopolysaccharide ABC export system, permease protein compare
PP_2330 +0.8 3.5 conserved protein of unknown function compare
PP_5248 +0.8 1.6 putative hydrolase compare
PP_4329 +0.7 1.8 FlhB domain protein compare
PP_0846 +0.7 1.7 DnaK-like molecular chaperone specific for IscU compare
PP_3532 +0.7 1.6 Transcriptional regulator, AsnC family compare
PP_2580 +0.7 2.9 conserved protein of unknown function compare
PP_1562 +0.7 1.0 putative Phage terminase, small subunit compare
PP_0240 +0.7 2.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_5644 +0.7 1.5 conserved membrane protein of unknown function compare
PP_2740 +0.7 1.9 Transcriptional regulator, MerR family compare
PP_0166 +0.7 5.7 HlyD family secretion protein compare
PP_0152 +0.7 1.1 conserved exported protein of unknown function compare
PP_4208 +0.7 4.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0666 +0.7 2.7 conserved protein of unknown function compare
PP_2322 +0.7 5.6 Major outer membrane lipoprotein compare
PP_2323 +0.7 5.9 conserved protein of unknown function compare
PP_1656 +0.7 3.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_0165 +0.7 5.9 GGDEF domain protein compare
PP_5661 +0.7 2.2 putative lipoprotein compare
PP_5073 +0.7 1.3 conserved exported protein of unknown function compare
PP_1692 +0.7 1.8 conserved protein of unknown function compare
PP_0167 +0.6 5.8 Toxin secretion ATP-binding protein compare
PP_5597 +0.6 2.1 conserved protein of unknown function compare
PP_0556 +0.6 3.0 Acetoin catabolism protein compare
PP_4793 +0.6 1.3 conserved protein of unknown function compare
PP_3989 +0.6 2.5 DNA-cytosine methyltransferase compare
PP_5090 +0.6 1.3 putative cell division protein compare
PP_4406 +0.6 1.7 conserved protein of unknown function compare
PP_2331 +0.6 3.8 conserved membrane protein of unknown function compare
PP_1855 +0.6 2.3 conserved exported protein of unknown function compare
PP_3205 +0.6 3.0 Fumarylacetoacetate hydrolase family protein compare
PP_4271 +0.6 0.6 conserved protein of unknown function compare
PP_3052 +0.6 1.0 conserved protein of unknown function compare
PP_0254 +0.6 2.4 conserved protein of unknown function compare
PP_3831 +0.6 3.5 conserved protein of unknown function compare
PP_4847 +0.6 1.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_2750 +0.6 2.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2530 +0.6 1.0 conserved protein of unknown function compare
PP_5519 +0.6 1.7 conserved protein of unknown function of phage origin compare
PP_2144 +0.6 1.5 Transcriptional regulator, TetR family compare
PP_0880 +0.6 2.1 dipeptide ABC transporter - putative membrane subunit compare
PP_5322 +0.6 2.9 putative metal ion transporter compare
PP_2845 +0.6 1.8 urease subunit alpha compare
PP_3877 +0.6 2.9 conserved protein of unknown function compare
PP_5706 +0.6 1.3 Sec translocation complex - SecG subunit compare
PP_0770 +0.6 3.1 PemI-like protein compare
PP_3908 +0.6 1.8 conserved protein of unknown function compare
PP_3480 +0.6 2.8 conserved protein of unknown function compare
PP_2341 +0.6 1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0508 +0.6 1.1 conserved exported protein of unknown function compare
PP_4561 +0.6 0.9 stress response protein compare
PP_2320 +0.6 4.5 conserved exported protein of unknown function compare
PP_5456 +0.6 1.3 conserved protein of unknown function compare
PP_1070 +0.6 2.8 glutamate / aspartate ABC transporter - permease subunit compare
PP_5500 +0.5 2.3 protein of unknown function compare
PP_4254 +0.5 1.3 conserved protein of unknown function compare
PP_3043 +0.5 1.8 conserved protein of unknown function compare
PP_2197 +0.5 2.4 conserved exported protein of unknown function compare
PP_2715 +0.5 1.8 ArsH protein compare
PP_5274 +0.5 1.0 conserved protein of unknown function compare
PP_5504 +0.5 3.0 conserved protein of unknown function compare
PP_2756 +0.5 2.0 conserved protein of unknown function compare
PP_0683 +0.5 2.1 conserved protein of unknown function compare
PP_3198 +0.5 1.1 Ferredoxin, 2Fe-2S compare
PP_4952 +0.5 1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1187 +0.5 2.6 sensor protein compare
PP_2528 +0.5 2.5 O-acetylhomoserine (thiol)-lyase compare
PP_0209 +0.5 2.5 ATP-binding taurine transporter subunit compare
PP_4238 +0.5 1.9 conserved protein of unknown function compare
PP_4340 +0.5 1.8 response regulator for chemotactic signal transduction compare
PP_3748 +0.5 2.4 conserved hypothetical protein compare
PP_1994 +0.5 1.1 tRNA pseudouridine (38-40)synthase compare
PP_0276 +0.5 0.9 Transcriptional regulator, Cro/CI family compare
PP_2883 +0.5 1.7 conserved protein of unknown function compare
PP_3035 +0.5 1.8 conserved protein of unknown function compare
PP_2653 +0.5 2.0 Transcriptional regulator, Cro/CI family compare
PP_2695 +0.5 1.8 Transcriptional regulator, LysR family compare
PP_3192 +0.5 2.8 conserved protein of unknown function compare
PP_3929 +0.5 1.5 conserved protein of unknown function compare
PP_0025 +0.5 1.0 hypothetical protein compare
PP_4569 +0.5 1.5 conserved protein of unknown function compare
PP_0355 +0.5 1.9 Response regulator compare
PP_2972 +0.5 1.4 conserved protein of unknown function compare
PP_2798 +0.5 2.3 putative Oxidoreductase compare
PP_5110 +0.5 2.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0627 +0.5 1.2 conserved protein of unknown function compare
PP_2791 +0.5 2.0 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_3551 +0.5 1.0 DNA-binding response regulator, LuxR family compare
PP_2404 +0.5 1.6 conserved exported protein of unknown function compare
PP_1845 +0.5 1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_3923 +0.5 2.3 Phosphoglycerate mutase compare
PP_4449 +0.5 2.9 conserved protein of unknown function compare
PP_3898 +0.5 2.1 conserved protein of unknown function compare
PP_5225 +0.5 1.1 frataxin compare
PP_2550 +0.5 1.2 putative transcriptional regulatory protein compare
PP_2640 +0.5 2.0 Acetyltransferase, GNAT family compare
PP_3369 +0.5 1.9 Transcriptional regulator, LysR family compare
PP_3792 +0.5 1.8 conserved protein of unknown function compare
PP_4015 +0.5 2.5 HflD-like high frequency lysogenization protein compare
PP_0398 +0.5 1.7 Thiosulfate sulfurtransferase GlpE compare
PP_3919 +0.5 1.3 conserved protein of unknown function compare
PP_2067 +0.5 1.2 putative EmrB/QacA family drug resistance transporter compare
PP_4159 +0.5 1.2 Potassium-transporting ATPase C chain compare
PP_3637 +0.5 0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4004 +0.5 1.5 DNA translocase FtsK compare
PP_2500 +0.5 2.8 conserved protein of unknown function compare
PP_5699 +0.5 2.2 putative iron uptake protein compare
PP_1651 +0.5 2.3 two-component response regulator compare
PP_3651 +0.5 3.7 Sensor histidine kinase/response regulator compare
PP_3892 +0.5 1.0 conserved protein of unknown function compare
PP_0768 +0.5 1.9 Response regulator/TPR domain protein compare
PP_5534 +0.5 2.1 protein of unknown function compare
PP_1476 +0.5 1.9 conserved protein of unknown function compare
PP_4173 +0.5 2.4 Sensor histidine kinase/response regulator compare
PP_2054 +0.5 1.8 putative DNA-binding transcriptional regulator compare
PP_0134 +0.4 2.9 conserved exported protein of unknown function compare
PP_4531 +0.4 1.6 conserved exported protein of unknown function compare
PP_4509 +0.4 1.7 conserved protein of unknown function compare
PP_4534 +0.4 2.2 conserved protein of unknown function compare
PP_4451 +0.4 1.9 conserved protein of unknown function compare
PP_4054 +0.4 1.2 conserved protein of unknown function compare
PP_5004 +0.4 2.3 Poly(3-hydroxyalkanoate) depolymerase compare
PP_0185 +0.4 3.1 Positive alginate biosynthesis regulatory protein compare
PP_2196 +0.4 1.3 agmatinase compare
PP_5328 +0.4 1.1 putative phosphate transport system permease protein compare
PP_3749 +0.4 2.3 conserved protein of unknown function compare
PP_5054 +0.4 0.6 glutaredoxin 3 compare
PP_0629 +0.4 2.0 conserved membrane protein of unknown function compare
PP_0657 +0.4 2.2 putative Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_5730 +0.4 1.9 conserved protein of unknown function compare
PP_3546 +0.4 2.8 Sensory box histidine kinase/response regulator compare
PP_4258 +0.4 1.4 cytochrome c oxidase subunit, cbb3-type compare
PP_3947 +0.4 2.0 nicotinate dehydrogenase subunit A compare
PP_0195 +0.4 0.8 conserved protein of unknown function compare
PP_1777 +0.4 3.2 phosphomannomutase compare
PP_3901 +0.4 2.1 conserved protein of unknown function compare
PP_2916 +0.4 1.6 riboflavin synthase compare
PP_1352 +0.4 1.3 UPF0234 protein PP_1352 compare
PP_1415 +0.4 1.8 putative membrane associated enzyme subunit compare
PP_1038 +0.4 1.3 conserved protein of unknown function compare
PP_1761 +0.4 3.1 diguanylate cyclase with phosphodiesterase domain compare
PP_2129 +0.4 2.1 conserved protein of unknown function compare
PP_1550 +0.4 2.2 Transcriptional regulator, Cro/CI family compare
PP_2318 +0.4 2.0 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_4895 +0.4 1.5 tRNA dimethylallyltransferase compare
PP_3454 +0.4 3.0 putative transcriptional regulatory protein compare
PP_3204 +0.4 1.3 conserved protein of unknown function compare
PP_5295 +0.4 1.0 conserved protein of unknown function compare
PP_2844 +0.4 2.4 Urease subunit beta compare
PP_2718 +0.4 0.6 arsenic resistance transcriptional regulator compare
PP_4214 +0.4 1.2 pyoverdine biosynthesis related protein compare
PP_1866 +0.4 2.2 Phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5096 +0.4 1.9 putative factor involved in shape determination compare
PP_5698 +0.4 2.7 conserved exported protein of unknown function compare
PP_2814 +0.4 1.3 conserved protein of unknown function compare
PP_1494 +0.4 2.5 Response regulator/GGDEF domain protein compare
PP_1632 +0.4 1.3 conserved protein of unknown function compare
PP_0550 +0.4 1.2 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Nonanoic acid in Pseudomonas putida KT2440

For carbon source Nonanoic acid across organisms