Experiment set15IT074 for Pseudomonas putida KT2440

Compare to:

Valeric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -7.0 -4.8 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.3 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -5.8 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2335 -5.5 -11.2 methylcitrate synthase compare
PP_1988 -5.4 -11.4 3-isopropylmalate dehydrogenase compare
PP_4678 -5.1 -16.0 Ketol-acid reductoisomerase compare
PP_5289 -5.1 -7.0 Acetylglutamate kinase compare
PP_4700 -5.0 -3.5 pantothenate synthetase compare
PP_4680 -4.8 -13.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -4.8 -6.6 Argininosuccinate lyase compare
PP_3511 -4.8 -8.6 Branched-chain-amino-acid aminotransferase compare
PP_0966 -4.7 -12.0 Histidinol dehydrogenase compare
PP_4909 -4.6 -10.0 phosphoserine phosphatase compare
PP_4679 -4.6 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -4.5 -7.2 Ornithine carbamoyltransferase compare
PP_4723 -4.5 -15.8 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.3 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_2001 -4.2 -9.7 O-succinylhomoserine sulfhydrylase compare
PP_0082 -4.2 -6.8 tryptophan synthase alpha chain compare
PP_5128 -4.1 -7.6 Dihydroxy-acid dehydratase compare
PP_0289 -4.1 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -4.0 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4058 -4.0 -12.3 1,4-alpha-glucan branching enzyme compare
PP_5155 -3.8 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1995 -3.7 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1986 -3.7 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_2371 -3.7 -8.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2334 -3.7 -7.7 2-methylisocitrate lyase compare
PP_0083 -3.6 -8.5 tryptophan synthase beta chain compare
PP_0422 -3.6 -4.8 Indole-3-glycerol phosphate synthase compare
PP_5097 -3.6 -12.1 homoserine O-acetyltransferase compare
PP_5185 -3.6 -6.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1214 -3.5 -2.4 putative transcriptional regulatory protein compare
PP_1088 -3.5 -11.5 Argininosuccinate synthase compare
PP_0967 -3.5 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3999 -3.5 -10.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4999 -3.4 -2.4 dihydroorotase-like protein compare
PP_5015 -3.3 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4799 -3.2 -4.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5098 -3.2 -8.3 methionine biosynthesis protein MetW compare
PP_0417 -3.1 -15.0 Anthranilate synthase component 1 compare
PP_2903 -3.0 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0763 -3.0 -11.1 Medium-chain-fatty-acid CoA ligase compare
PP_0691 -3.0 -4.4 Glutamate 5-kinase compare
PP_0292 -2.9 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2433 -2.9 -4.4 conserved protein of unknown function compare
PP_0339 -2.9 -4.4 Pyruvate dehydrogenase E1 component compare
PP_1025 -2.9 -9.5 2-isopropylmalate synthase compare
PP_2370 -2.7 -1.9 conserved protein of unknown function compare
PP_4890 -2.7 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -2.6 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2356 -2.5 -10.0 putative Phytochrome family protein compare
PP_2337 -2.5 -2.9 aconitate isomerase compare
PP_5095 -2.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_5717 -2.4 -2.3 conserved protein of unknown function compare
PP_0063 -2.3 -1.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0767 -2.3 -10.7 Transcriptional regulator, LuxR family compare
PP_4699 -2.3 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0393 -2.2 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4122 -2.1 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1237 -2.1 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4004 -2.0 -3.0 DNA translocase FtsK compare
PP_0421 -2.0 -6.0 Anthranilate phosphoribosyltransferase compare
PP_2000 -2.0 -3.0 amidophosphoribosyl transferase compare
PP_1097 -1.9 -1.9 Methionine--tRNA ligase compare
PP_1654 -1.9 -3.8 cysteine synthase B compare
PP_2328 -1.9 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_4136 -1.9 -1.8 Transcriptional regulator, LuxR family compare
PP_2868 -1.8 -5.4 Transcriptional regulator, Cro/CI family compare
PP_1353 -1.8 -2.0 conserved membrane protein of unknown function compare
PP_2302 -1.8 -5.3 DNA-binding, ATP-dependent protease compare
PP_0291 -1.8 -2.2 conserved protein of unknown function compare
PP_2354 -1.8 -8.6 Sensory box histidine kinase/response regulator compare
PP_0856 -1.8 -1.2 conserved lipoprotein of unknown function compare
PP_1215 -1.8 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_2336 -1.7 -1.2 aconitate hydratase 1 compare
PP_0276 -1.7 -1.4 Transcriptional regulator, Cro/CI family compare
PP_2327 -1.7 -3.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1216 -1.7 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0164 -1.7 -6.2 conserved protein of unknown function compare
PP_3248 -1.7 -2.2 Dyp-type peroxidase family protein compare
PP_5352 -1.6 -8.9 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4120 -1.6 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_1664 -1.5 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_0852 -1.5 -1.7 Transcriptional regulator, Cro/CI family compare
PP_3649 -1.5 -4.0 Transcriptional regulator, GntR family compare
PP_5309 -1.5 -1.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_t29 -1.5 -1.9 tRNA-Ala compare
PP_0962 -1.5 -2.2 toluene-tolerance protein compare
PP_0420 -1.5 -5.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1733 -1.5 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1022 -1.4 -3.3 glucose 6-phosphate-1-dehydrogenase compare
PP_4726 -1.4 -2.2 Chaperone protein DnaJ compare
PP_4121 -1.4 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_5338 -1.4 -2.8 aspartate ammonia-lyase compare
PP_0855 -1.4 -1.8 conserved protein of unknown function compare
PP_0834 -1.4 -0.9 Sec translocation complex subunit YajC compare
PP_3902 -1.4 -2.8 conserved protein of unknown function compare
PP_5028 -1.4 -2.9 proline iminopeptidase compare
PP_1036 -1.4 -5.0 membrane-bound lytic murein transglycosylase F compare
PP_1198 -1.3 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4693 -1.3 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_4364 -1.3 -2.7 putative Anti-sigma F factor antagonist compare
PP_0235 -1.3 -2.5 Peroxidase compare
PP_1428 -1.2 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_2087 -1.2 -2.3 CmpX protein compare
PP_1304 -1.2 -7.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3603 -1.2 -3.8 Transcriptional regulator, GntR family compare
PP_3328 -1.2 -1.9 putative Ring-cleaving dioxygenase compare
PP_0959 -1.2 -1.7 phospholipid ABC transporter compare
PP_5453 -1.2 -1.2 conserved protein of unknown function compare
PP_0048 -1.2 -1.1 conserved protein of unknown function compare
PP_4532 -1.2 -1.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2307 -1.2 -2.2 conserved protein of unknown function compare
PP_4940 -1.1 -4.0 Putative glycosyltransferase compare
PP_4575 -1.1 -3.2 Urea amidolyase-related protein compare
PP_3753 -1.1 -3.5 Transcriptional regulator, AraC family compare
PP_5310 -1.1 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_1186 -1.1 -0.9 two component system DNA-binding transcriptional dual regulator compare
PP_1128 -1.1 -2.9 OmpA family protein compare
PP_0961 -1.1 -5.1 toluene tolerance protein compare
PP_2475 -1.1 -2.7 Transcriptional regulator, TetR family compare
PP_4129 -1.1 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5640 -1.1 -3.2 conserved protein of unknown function compare
PP_4329 -1.1 -1.7 FlhB domain protein compare
PP_2163 -1.1 -4.2 VacJ lipoprotein compare
PP_3286 -1.1 -3.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4937 -1.1 -1.9 toluene tolerance protein compare
PP_4131 -1.1 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_4793 -1.0 -2.0 conserved protein of unknown function compare
PP_2403 -1.0 -1.4 Chemotaxis protein CheY compare
PP_4126 -1.0 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_5253 -1.0 -3.0 Arylesterase compare
PP_1303 -1.0 -5.5 Sulfate adenylyltransferase subunit 2 compare
PP_1217 -1.0 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4515 -1.0 -3.8 Transcriptional regulator, MarR family compare
PP_4342 -1.0 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_2568 -1.0 -1.0 Ring-cleaving dioxygenase compare
PP_1493 -1.0 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1589 -1.0 -4.5 uridylyltransferase compare
PP_3447 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_0370 -1.0 -7.4 Acyl-CoA dehydrogenase family protein compare
PP_1826 -1.0 -1.4 Hydrolase, isochorismatase family compare
PP_2326 -1.0 -4.6 Universal stress protein compare
PP_4964 -1.0 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4923 -1.0 -5.1 Outer membrane efflux protein compare
PP_4379 -1.0 -3.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5227 -1.0 -3.5 diaminopimelate decarboxylase compare
PP_5027 -1.0 -1.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4402 -1.0 -5.2 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_3967 -0.9 -2.6 MutT/nudix family protein compare
PP_4993 -0.9 -2.2 Glutathione synthetase compare
PP_4936 -0.9 -3.6 O-antigen polymerase compare
PP_1381 -0.9 -0.8 4-carboxymuconolactone decarboxylase compare
PP_5346 -0.9 -4.5 pyruvate carboxylase subunit B compare
PP_0839 -0.9 -3.6 tRNA Cm32/Um32 methyltransferase compare
PP_2153 -0.9 -1.7 conserved protein of unknown function compare
PP_0556 -0.9 -2.1 Acetoin catabolism protein compare
PP_5317 -0.9 -3.1 Probable chorismate pyruvate-lyase compare
PP_3756 -0.9 -3.5 TetR family transcriptional regulator compare
PP_5090 -0.9 -1.4 putative cell division protein compare
PP_5621 -0.9 -2.3 protein of unknown function compare
PP_5701 -0.9 -1.0 conserved protein of unknown function compare
PP_4094 -0.9 -1.7 conserved protein of unknown function compare
PP_1734 -0.9 -2.3 Probable septum site-determining protein MinC compare
PP_2083 -0.9 -2.4 putative Lipase compare
PP_0630 -0.9 -0.8 DNA gyrase inhibitor YacG compare
PP_2168 -0.9 -4.2 Transaldolase compare
PP_0002 -0.9 -3.7 probable chromosome partition protein compare
PP_2027 -0.9 -2.3 conserved exported protein of unknown function compare
PP_2074 -0.9 -3.4 Transcriptional regulator, LysR family compare
PP_t12 -0.9 -0.8 tRNA-Thr compare
PP_5499 -0.8 -2.2 conserved protein of unknown function compare
PP_4576 -0.8 -3.8 allophanate hydrolase subunit compare
PP_4503 -0.8 -2.2 DNA-binding response regulator compare
PP_3731 -0.8 -4.0 Transcriptional regulator, TetR family compare
PP_1790 -0.8 -2.6 putative Acylneuraminate cytidylyltransferase compare
PP_1076 -0.8 -3.8 aquaglyceroporin compare
PP_0440 -0.8 -1.4 Elongation factor Tu-A compare
PP_4063 -0.8 -4.9 putative Long-chain-fatty-acid-CoA ligase compare
PP_4301 -0.8 -3.0 Pyruvate kinase compare
PP_1860 -0.8 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_3034 -0.8 -2.0 putative Regulator protein compare
PP_3036 -0.8 -3.0 conserved protein of unknown function compare
PP_5528 -0.8 -0.9 conserved protein of unknown function compare
PP_5525 -0.8 -2.6 conserved exported protein of unknown function compare
PP_0833 -0.8 -1.3 queuine tRNA-ribosyltransferase compare
PP_2345 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4874 -0.8 -0.5 50S ribosomal protein L9 compare
PP_5241 -0.8 -1.5 DNA-binding response regulator, LuxR family compare
PP_1140 -0.8 -5.1 branched chain amino acid transporter - permease subunit compare
PP_3554 -0.8 -5.5 Acyl-CoA dehydrogenase family protein compare
PP_1141 -0.8 -3.6 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_5359 -0.8 -2.1 CobW/P47K family protein compare
PP_2030 -0.8 -1.8 conserved protein of unknown function compare
PP_2031 -0.8 -0.9 conserved protein of unknown function compare
PP_3241 -0.7 -0.8 conserved exported protein of unknown function compare
PP_0957 -0.7 -0.9 D-arabinose 5-phosphate isomerase compare
PP_3892 -0.7 -1.0 conserved protein of unknown function compare
PP_3365 -0.7 -1.0 Acetolactate synthase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Valeric acid in Pseudomonas putida KT2440

For carbon source Valeric acid across organisms