Experiment set15IT072 for Pseudomonas putida KT2440

Compare to:

Decanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_1988 -6.7 -8.0 3-isopropylmalate dehydrogenase compare
PP_0293 -6.3 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0691 -6.3 -4.3 Glutamate 5-kinase compare
PP_0356 -6.1 -9.3 malate synthase G compare
PP_2136 -6.0 -4.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5155 -6.0 -8.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4723 -5.9 -12.1 Carbamoyl-phosphate synthase large chain compare
PP_1986 -5.9 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_4724 -5.8 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_0290 -5.8 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -5.7 -13.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -5.7 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_5015 -5.4 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -5.4 -11.4 Branched-chain-amino-acid aminotransferase compare
PP_1109 -5.3 -16.1 Transcriptional regulator, GntR family compare
PP_1985 -5.2 -7.2 3-isopropylmalate dehydratase large subunit compare
PP_4909 -5.2 -10.5 phosphoserine phosphatase compare
PP_0966 -5.1 -13.0 Histidinol dehydrogenase compare
PP_5014 -5.1 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4549 -5.0 -14.1 long-chain-fatty-acid/CoA ligase compare
PP_4116 -5.0 -13.5 isocitrate lyase compare
PP_1088 -4.9 -13.0 Argininosuccinate synthase compare
PP_4678 -4.8 -18.7 Ketol-acid reductoisomerase compare
PP_0184 -4.7 -6.5 Argininosuccinate lyase compare
PP_3999 -4.7 -7.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5185 -4.7 -9.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5659 -4.7 -4.1 protein of unknown function compare
PP_4680 -4.6 -14.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4679 -4.6 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1111 -4.4 -9.9 putative Synthetase compare
PP_0289 -4.3 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1237 -4.3 -3.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0422 -4.3 -6.7 Indole-3-glycerol phosphate synthase compare
PP_0082 -4.3 -7.1 tryptophan synthase alpha chain compare
PP_5128 -4.3 -7.7 Dihydroxy-acid dehydratase compare
PP_4699 -4.2 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1995 -4.2 -10.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0083 -4.2 -7.8 tryptophan synthase beta chain compare
PP_1912 -4.1 -6.8 Phosphate acyltransferase compare
PP_2371 -4.1 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_4799 -4.1 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0965 -4.0 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4700 -4.0 -6.1 pantothenate synthetase compare
PP_1664 -4.0 -6.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_5095 -3.9 -2.6 pyrroline-5-carboxylate reductase compare
PP_0292 -3.8 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -3.8 -6.9 Ornithine carbamoyltransferase compare
PP_1231 -3.7 -6.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0368 -3.7 -13.0 putative Acyl-CoA dehydrogenase compare
PP_0417 -3.6 -17.7 Anthranilate synthase component 1 compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_5097 -3.4 -14.0 homoserine O-acetyltransferase compare
PP_2328 -3.4 -8.7 Phosphoadenosine phosphosulfate reductase compare
PP_0421 -3.3 -7.3 Anthranilate phosphoribosyltransferase compare
PP_5289 -3.3 -4.5 Acetylglutamate kinase compare
PP_1025 -3.2 -12.0 2-isopropylmalate synthase compare
PP_5098 -3.1 -7.3 methionine biosynthesis protein MetW compare
PP_0420 -3.1 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2001 -3.0 -8.0 O-succinylhomoserine sulfhydrylase compare
PP_2137 -3.0 -3.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_5303 -2.9 -6.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0787 -2.7 -7.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2327 -2.6 -8.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3248 -2.6 -1.8 Dyp-type peroxidase family protein compare
PP_3946 -2.6 -1.9 HTH-type transcriptional repressor NicR compare
PP_5085 -2.6 -8.7 malic enzyme B compare
PP_2000 -2.5 -3.0 amidophosphoribosyl transferase compare
PP_0393 -2.5 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1654 -2.5 -3.4 cysteine synthase B compare
PP_2356 -2.3 -9.1 putative Phytochrome family protein compare
PP_1110 -2.3 -3.4 serine acetyltransferase compare
PP_0063 -2.3 -2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5346 -2.1 -9.3 pyruvate carboxylase subunit B compare
PP_2302 -2.1 -5.4 DNA-binding, ATP-dependent protease compare
PP_0291 -2.1 -2.3 conserved protein of unknown function compare
PP_4121 -2.0 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_5007 -2.0 -3.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2388 -2.0 -4.6 Transporter, LysE family compare
PP_4126 -2.0 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_2370 -1.9 -2.3 conserved protein of unknown function compare
PP_0164 -1.9 -9.1 conserved protein of unknown function compare
PP_4098 -1.9 -2.6 UvrABC system protein C compare
PP_4129 -1.9 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5347 -1.9 -9.1 pyruvate carboxylase subunit A compare
PP_4364 -1.7 -5.0 putative Anti-sigma F factor antagonist compare
PP_4122 -1.7 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5028 -1.7 -3.1 proline iminopeptidase compare
PP_0685 -1.6 -2.4 conserved protein of unknown function compare
PP_5309 -1.6 -1.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2336 -1.6 -1.9 aconitate hydratase 1 compare
PP_4696 -1.6 -4.0 Nitrogen regulation protein NR(I) compare
PP_3790 -1.6 -8.3 diaminopimelate epimerase compare
PP_4130 -1.6 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0246 -1.6 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_1097 -1.5 -1.9 Methionine--tRNA ligase compare
PP_4058 -1.5 -7.7 1,4-alpha-glucan branching enzyme compare
PP_3539 -1.5 -1.9 putative Transcriptional regulator compare
PP_1353 -1.5 -1.9 conserved membrane protein of unknown function compare
PP_1589 -1.5 -6.1 uridylyltransferase compare
PP_2354 -1.5 -7.3 Sensory box histidine kinase/response regulator compare
PP_4943 -1.5 -1.9 putative Glycosyl transferase compare
PP_3312 -1.4 -1.5 putative Heat shock protein compare
PP_0856 -1.4 -1.7 conserved lipoprotein of unknown function compare
PP_4120 -1.4 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_1629 -1.4 -4.5 Protein RecA compare
PP_5348 -1.4 -8.2 Transcriptional regulator, LysR family compare
PP_1764 -1.4 -7.0 Phosphoglycolate phosphatase 2 compare
PP_0852 -1.4 -1.8 Transcriptional regulator, Cro/CI family compare
PP_1609 -1.4 -2.0 conserved protein of unknown function compare
PP_5352 -1.3 -6.9 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0888 -1.3 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1968 -1.3 -5.2 TetR family transcriptional regulator compare
PP_3590 -1.3 -5.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1826 -1.3 -3.0 Hydrolase, isochorismatase family compare
PP_4131 -1.2 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_2087 -1.2 -2.4 CmpX protein compare
PP_1036 -1.2 -4.8 membrane-bound lytic murein transglycosylase F compare
PP_0401 -1.2 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_5604 -1.2 -1.6 putative subtilisin-like serine protease compare
PP_1994 -1.2 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_4550 -1.2 -4.8 long-chain-fatty-acid/CoA ligase compare
PP_4213 -1.2 -2.7 putative dipeptidase compare
PP_4693 -1.1 -3.2 RNA polymerase-binding transcription factor DksA compare
PP_4254 -1.1 -2.3 conserved protein of unknown function compare
PP_4940 -1.1 -4.4 Putative glycosyltransferase compare
PP_2337 -1.1 -2.2 aconitate isomerase compare
PP_4532 -1.1 -2.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2299 -1.1 -2.0 Trigger factor compare
PP_5338 -1.1 -2.2 aspartate ammonia-lyase compare
PP_4004 -1.1 -2.3 DNA translocase FtsK compare
PP_4782 -1.1 -3.9 Phosphomethylpyrimidine kinase compare
PP_2390 -1.1 -5.7 Transcriptional regulator, LysR family compare
PP_4545 -1.1 -3.8 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_0007 -1.1 -2.6 conserved hypothetical protein compare
PP_0439 -1.1 -4.1 conserved protein of unknown function compare
PP_3505 -1.1 -2.2 conserved protein of unknown function compare
PP_4880 -1.1 -5.9 exoribonuclease R compare
PP_0370 -1.0 -7.6 Acyl-CoA dehydrogenase family protein compare
PP_2737 -1.0 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1328 -1.0 -1.4 Protein MraZ compare
PP_0848 -1.0 -2.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4199 -1.0 -1.0 putative Lipoprotein compare
PP_0435 -1.0 -8.0 Peptidase, M23/M37 family compare
PP_5104 -1.0 -5.7 thiazole synthase compare
PP_4997 -1.0 -1.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5317 -1.0 -2.7 Probable chorismate pyruvate-lyase compare
PP_5017 -1.0 -1.1 Sec-independent protein translocase protein TatB compare
PP_4575 -1.0 -3.5 Urea amidolyase-related protein compare
PP_1941 -1.0 -4.1 conserved protein of unknown function compare
PP_0362 -1.0 -6.4 Biotin synthase compare
PP_1763 -1.0 -3.6 putative oxidoreductase compare
PP_5528 -1.0 -1.2 conserved protein of unknown function compare
PP_5717 -1.0 -1.8 conserved protein of unknown function compare
PP_0962 -0.9 -1.7 toluene-tolerance protein compare
PP_2868 -0.9 -5.3 Transcriptional regulator, Cro/CI family compare
PP_5594 -0.9 -2.1 conserved protein of unknown function compare
PP_3102 -0.9 -2.7 conserved protein of unknown function compare
PP_4874 -0.9 -0.6 50S ribosomal protein L9 compare
PP_5216 -0.9 -1.7 exopolyphosphatase compare
PP_0002 -0.9 -3.9 probable chromosome partition protein compare
PP_4548 -0.9 -4.5 putative Oxidoreductase compare
PP_4964 -0.9 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1917 -0.9 -4.4 4-amino-4-deoxychorismate lyase compare
PP_4124 -0.9 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_1022 -0.9 -2.7 glucose 6-phosphate-1-dehydrogenase compare
PP_1493 -0.9 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0434 -0.9 -6.3 Anhydro-N-acetylmuramic acid kinase compare
PP_1734 -0.9 -2.4 Probable septum site-determining protein MinC compare
PP_0855 -0.9 -1.5 conserved protein of unknown function compare
PP_5230 -0.9 -1.8 Tyrosine recombinase XerC compare
PP_5000 -0.9 -0.5 peptidase component of the ATP-dependent HslVU protease compare
PP_5227 -0.9 -4.0 diaminopimelate decarboxylase compare
PP_0153 -0.9 -1.8 hypothetical protein compare
PP_1038 -0.9 -1.9 conserved protein of unknown function compare
PP_0874 -0.9 -1.6 conserved protein of unknown function compare
PP_3861 -0.9 -2.4 Phage FluMu protein gp46 compare
PP_0312 -0.9 -3.8 electron transfer flavoprotein, alpha subunit compare
PP_2414 -0.9 -2.7 conserved exported protein of unknown function compare
PP_1663 -0.9 -2.9 conserved exported protein of unknown function compare
PP_2307 -0.9 -1.5 conserved protein of unknown function compare
PP_4824 -0.8 -2.8 Sensor histidine kinase/response regulator compare
PP_1045 -0.8 -1.3 Type II secretion pathway protein XcpP compare
PP_3817 -0.8 -3.0 Polyamine ABC transporter, ATP-binding protein compare
PP_2568 -0.8 -1.0 Ring-cleaving dioxygenase compare
PP_3726 -0.8 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_2433 -0.8 -1.7 conserved protein of unknown function compare
PP_0065 -0.8 -1.8 NAD-binding component of TrK potassium transporter compare
PP_2402 -0.8 -1.3 putative Sensor histidine kinase compare
PP_1233 -0.8 -2.8 sulfurtransferase compare
PP_1208 -0.8 -1.2 conserved protein of unknown function, SlyX family compare
PP_4546 -0.8 -2.1 ATP-dependent helicase HrpA compare
PP_4143 -0.8 -2.1 conserved protein of unknown function compare
PP_0218 -0.8 -5.0 Sensory box protein compare
PP_1678 -0.8 -2.6 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5654 -0.8 -1.8 putative phosphotriesterase compare
PP_0364 -0.8 -4.3 pimeloyl-[acp] methyl ester esterase compare
PP_4671 -0.8 -3.0 conserved exported protein of unknown function compare
PP_2880 -0.8 -1.3 Transcriptional regulator, TetR family compare
PP_1355 -0.8 -7.2 Muropeptide permease AmpG compare
PP_3105 -0.8 -1.9 conserved membrane protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Decanoic acid in Pseudomonas putida KT2440

For carbon source Decanoic acid across organisms