Experiment set15IT071 for Pseudomonas putida KT2440

Compare to:

Hexanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.3 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.9 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_0289 -5.8 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0290 -5.5 -7.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -5.4 -3.7 tryptophan synthase alpha chain compare
PP_4909 -5.3 -10.2 phosphoserine phosphatase compare
PP_4700 -5.0 -3.5 pantothenate synthetase compare
PP_1088 -4.9 -14.5 Argininosuccinate synthase compare
PP_5289 -4.8 -7.3 Acetylglutamate kinase compare
PP_5128 -4.6 -8.6 Dihydroxy-acid dehydratase compare
PP_4724 -4.4 -8.6 Carbamoyl-phosphate synthase small chain compare
PP_4680 -4.4 -15.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2903 -4.2 -3.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1985 -4.2 -6.6 3-isopropylmalate dehydratase large subunit compare
PP_0083 -4.0 -8.6 tryptophan synthase beta chain compare
PP_0164 -3.9 -9.8 conserved protein of unknown function compare
PP_4678 -3.9 -12.1 Ketol-acid reductoisomerase compare
PP_1988 -3.8 -7.0 3-isopropylmalate dehydrogenase compare
PP_1079 -3.7 -6.5 Ornithine carbamoyltransferase compare
PP_3511 -3.7 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_4723 -3.7 -10.2 Carbamoyl-phosphate synthase large chain compare
PP_0967 -3.7 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2031 -3.6 -2.7 conserved protein of unknown function compare
PP_0184 -3.6 -6.1 Argininosuccinate lyase compare
PP_4799 -3.5 -4.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4699 -3.5 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_0966 -3.5 -9.5 Histidinol dehydrogenase compare
PP_4116 -3.5 -9.9 isocitrate lyase compare
PP_5185 -3.3 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0356 -3.3 -8.9 malate synthase G compare
PP_0292 -3.3 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3286 -3.2 -7.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4364 -3.2 -4.0 putative Anti-sigma F factor antagonist compare
PP_0691 -3.0 -5.3 Glutamate 5-kinase compare
PP_3999 -3.0 -10.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5097 -3.0 -12.4 homoserine O-acetyltransferase compare
PP_2370 -2.9 -3.0 conserved protein of unknown function compare
PP_4679 -2.9 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -2.9 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_5015 -2.9 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2328 -2.7 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_0422 -2.7 -4.4 Indole-3-glycerol phosphate synthase compare
PP_2001 -2.7 -7.2 O-succinylhomoserine sulfhydrylase compare
PP_3946 -2.7 -1.6 HTH-type transcriptional repressor NicR compare
PP_0421 -2.6 -7.5 Anthranilate phosphoribosyltransferase compare
PP_1214 -2.6 -3.0 putative transcriptional regulatory protein compare
PP_1995 -2.6 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -2.5 -5.1 methionine biosynthesis protein MetW compare
PP_2087 -2.5 -4.3 CmpX protein compare
PP_0393 -2.5 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5659 -2.4 -2.6 protein of unknown function compare
PP_5095 -2.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_4890 -2.4 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -2.4 -12.3 Anthranilate synthase component 1 compare
PP_0965 -2.3 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0370 -2.3 -12.3 Acyl-CoA dehydrogenase family protein compare
PP_2302 -2.3 -6.0 DNA-binding, ATP-dependent protease compare
PP_4129 -2.3 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3248 -2.3 -2.1 Dyp-type peroxidase family protein compare
PP_1216 -2.2 -2.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4120 -2.2 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_2327 -2.2 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1664 -2.2 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1025 -2.2 -7.9 2-isopropylmalate synthase compare
PP_5014 -2.1 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1186 -2.1 -2.5 two component system DNA-binding transcriptional dual regulator compare
PP_4943 -2.1 -1.6 putative Glycosyl transferase compare
PP_3821 -2.1 -6.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5085 -2.0 -7.1 malic enzyme B compare
PP_4940 -2.0 -5.8 Putative glycosyltransferase compare
PP_0763 -1.9 -9.0 Medium-chain-fatty-acid CoA ligase compare
PP_4126 -1.9 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_2433 -1.9 -4.0 conserved protein of unknown function compare
PP_5155 -1.9 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0420 -1.9 -6.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4549 -1.8 -7.7 long-chain-fatty-acid/CoA ligase compare
PP_5216 -1.8 -2.2 exopolyphosphatase compare
PP_4131 -1.8 -5.6 NADH-quinone oxidoreductase subunit N compare
PP_4004 -1.8 -3.2 DNA translocase FtsK compare
PP_4121 -1.7 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PP_4058 -1.7 -7.3 1,4-alpha-glucan branching enzyme compare
PP_0855 -1.6 -2.1 conserved protein of unknown function compare
PP_2868 -1.6 -4.7 Transcriptional regulator, Cro/CI family compare
PP_5309 -1.6 -1.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2356 -1.5 -5.6 putative Phytochrome family protein compare
PP_2378 -1.5 -2.3 Fe/S biogenesis protein NfuA compare
PP_0291 -1.5 -2.4 conserved protein of unknown function compare
PP_2725 -1.5 -2.7 Protease PfpI compare
PP_0888 -1.4 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_2414 -1.4 -1.0 conserved exported protein of unknown function compare
PP_0022 -1.4 -1.0 hypothetical protein compare
PP_0856 -1.4 -1.7 conserved lipoprotein of unknown function compare
PP_2000 -1.4 -2.5 amidophosphoribosyl transferase compare
PP_4988 -1.3 -5.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2217 -1.3 -3.9 enoyl-CoA hydratase compare
PP_4213 -1.3 -2.4 putative dipeptidase compare
PP_1629 -1.3 -4.3 Protein RecA compare
PP_5352 -1.3 -6.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3312 -1.3 -1.8 putative Heat shock protein compare
PP_5198 -1.3 -2.1 conserved protein of unknown function compare
PP_1362 -1.2 -3.5 pyruvate kinase II compare
PP_5227 -1.2 -3.7 diaminopimelate decarboxylase compare
PP_1176 -1.2 -1.9 conserved protein of unknown function compare
PP_1493 -1.2 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5346 -1.2 -5.5 pyruvate carboxylase subunit B compare
PP_4094 -1.2 -2.5 conserved protein of unknown function compare
PP_5350 -1.2 -2.2 Transcriptional regulator, RpiR family compare
PP_0063 -1.2 -2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3506 -1.2 -4.4 Magnesium chelatase, subunit ChII compare
PP_5491 -1.2 -1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_4693 -1.2 -3.3 RNA polymerase-binding transcription factor DksA compare
PP_1800 -1.1 -6.4 Oxidoreductase Rmd compare
PP_2354 -1.1 -5.8 Sensory box histidine kinase/response regulator compare
PP_0914 -1.1 -5.5 GGDEF domain protein compare
PP_3755 -1.1 -4.1 3-hydroxybutyryl-CoA dehydrogenase compare
PP_0852 -1.1 -1.9 Transcriptional regulator, Cro/CI family compare
PP_2475 -1.1 -2.4 Transcriptional regulator, TetR family compare
PP_3505 -1.1 -1.5 conserved protein of unknown function compare
PP_5007 -1.1 -1.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1026 -1.1 -2.9 Peptidase, M23/M37 family compare
PP_0767 -1.1 -5.7 Transcriptional regulator, LuxR family compare
PP_1217 -1.1 -2.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1215 -1.1 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1381 -1.1 -0.9 4-carboxymuconolactone decarboxylase compare
PP_1654 -1.1 -2.4 cysteine synthase B compare
PP_4546 -1.1 -2.4 ATP-dependent helicase HrpA compare
PP_4143 -1.1 -3.1 conserved protein of unknown function compare
PP_0401 -1.1 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1353 -1.1 -1.4 conserved membrane protein of unknown function compare
PP_3392 -1.1 -1.6 conserved protein of unknown function compare
PP_4122 -1.0 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4342 -1.0 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_2510 -1.0 -1.5 conserved protein of unknown function compare
PP_1099 -1.0 -1.1 Cold shock protein CapB compare
PP_2379 -1.0 -3.2 putative cytochrome oxidase biogenesis protein compare
PP_0319 -1.0 -1.3 conserved protein of unknown function compare
PP_3449 -1.0 -1.9 conserved exported protein of unknown function compare
PP_3481 -1.0 -2.5 conserved exported protein of unknown function compare
PP_2324 -1.0 -4.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3766 -1.0 -1.7 Lactoylglutathione lyase compare
PP_0512 -1.0 -1.3 hypothetical protein compare
PP_4098 -1.0 -1.3 UvrABC system protein C compare
PP_3829 -1.0 -2.6 Molybdenum transport system permease protein ModB compare
PP_2337 -1.0 -1.8 aconitate isomerase compare
PP_0001 -1.0 -1.1 probable chromosome-partitioning protein compare
PP_4223 -0.9 -1.1 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2142 -0.9 -1.9 Cell division inhibitor SulA compare
PP_4555 -0.9 -2.1 conserved protein of unknown function compare
PP_1231 -0.9 -3.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3892 -0.9 -1.2 conserved protein of unknown function compare
PP_3754 -0.9 -3.4 Beta-ketothiolase BktB compare
PP_3346 -0.9 -2.3 Nickel transporter ATP-binding protein compare
PP_5388 -0.9 -2.4 probable exported copper efflux protein compare
PP_3906 -0.9 -2.0 conserved protein of unknown function compare
PP_1734 -0.9 -2.0 Probable septum site-determining protein MinC compare
PP_2326 -0.9 -4.3 Universal stress protein compare
PP_4938 -0.9 -4.4 putative Glycosyl transferase compare
PP_5028 -0.9 -1.9 proline iminopeptidase compare
PP_2013 -0.8 -2.7 conserved protein of unknown function compare
PP_4874 -0.8 -0.5 50S ribosomal protein L9 compare
PP_5022 -0.8 -1.6 Glutamine transport ATP-binding protein GlnQ compare
PP_4124 -0.8 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_0002 -0.8 -3.4 probable chromosome partition protein compare
PP_1903 -0.8 -1.5 putative phosphotyrosine-protein phosphatase compare
PP_3883 -0.8 -1.8 putative Phage holin compare
PP_2846 -0.8 -1.2 urease accessory protein compare
PP_3277 -0.8 -3.0 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_3539 -0.8 -0.9 putative Transcriptional regulator compare
PP_3790 -0.8 -4.3 diaminopimelate epimerase compare
PP_4937 -0.8 -1.3 toluene tolerance protein compare
PP_5114 -0.8 -1.3 putative adenine methyltransferase compare
PP_3649 -0.8 -2.1 Transcriptional regulator, GntR family compare
PP_3603 -0.8 -2.4 Transcriptional regulator, GntR family compare
PP_5507 -0.8 -2.1 protein of unknown function compare
PP_3833 -0.8 -2.7 Response regulator compare
PP_5100 -0.8 -1.8 dITP/XTP pyrophosphatase compare
PP_1310 -0.8 -2.1 conserved hypothetical protein compare
PP_1036 -0.8 -2.7 membrane-bound lytic murein transglycosylase F compare
PP_1941 -0.8 -2.5 conserved protein of unknown function compare
PP_5310 -0.8 -2.7 junction-specific ATP-dependent DNA helicase compare
PP_4130 -0.8 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1790 -0.8 -3.0 putative Acylneuraminate cytidylyltransferase compare
PP_3102 -0.8 -1.2 conserved protein of unknown function compare
PP_0439 -0.8 -1.9 conserved protein of unknown function compare
PP_4317 -0.8 -1.5 conserved protein of unknown function compare
PP_4814 -0.8 -2.1 ATP-dependent protease La domain protein compare
PP_0313 -0.8 -1.9 putative electron transfer flavoprotein beta subunit compare
PP_4936 -0.7 -3.0 O-antigen polymerase compare
PP_2336 -0.7 -1.4 aconitate hydratase 1 compare
PP_3098 -0.7 -0.7 conserved protein of unknown function compare
PP_1097 -0.7 -0.9 Methionine--tRNA ligase compare
PP_4738 -0.7 -1.0 conserved exported protein of unknown function compare
PP_0628 -0.7 -2.1 conserved protein of unknown function compare
PP_1237 -0.7 -0.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2530 -0.7 -1.1 conserved protein of unknown function compare
PP_2397 -0.7 -2.2 EF hand domain protein compare
PP_1609 -0.7 -0.7 conserved protein of unknown function compare
PP_5347 -0.7 -4.3 pyruvate carboxylase subunit A compare
PP_1589 -0.7 -2.9 uridylyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Hexanoic acid in Pseudomonas putida KT2440

For carbon source Hexanoic acid across organisms