Experiment set15IT071 for Pseudomonas putida KT2440

Compare to:

Hexanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +3.3 22.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_1650 +2.9 28.1 Sensor protein GacS compare
PP_4099 +2.9 27.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4994 +2.7 18.4 conserved protein of unknown function compare
PP_5145 +2.5 23.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1898 +2.3 5.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1968 +1.9 9.2 TetR family transcriptional regulator compare
PP_0948 +1.9 7.7 Phosphocarrier protein HPr compare
PP_0547 +1.7 6.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1655 +1.6 5.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5232 +1.5 3.4 conserved protein of unknown function compare
PP_1656 +1.5 5.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_2889 +1.4 5.3 putative Transmembrane regulator PrtR compare
PP_4171 +1.3 9.2 conserved exported protein of unknown function compare
PP_5054 +1.3 2.8 glutaredoxin 3 compare
PP_4504 +1.2 1.3 conserved exported protein of unknown function compare
PP_5146 +1.2 5.4 RNA pyrophosphohydrolase compare
PP_4227 +1.1 1.0 conserved protein of unknown function compare
PP_2437 +1.1 6.9 putative Acyl-CoA dehydrogenase compare
PP_0179 +1.1 7.7 putative efflux transporter compare
PP_4961 +1.1 3.0 putative Lipoprotein compare
PP_2816 +1.1 3.9 putative Transcriptional regulator NfxB compare
PP_4902 +1.1 3.0 Oligoribonuclease compare
PP_5053 +1.0 4.4 Protein-export protein SecB compare
PP_3765 +1.0 4.6 H-NS family protein MvaT compare
PP_0254 +1.0 3.6 conserved protein of unknown function compare
PP_1528 +1.0 1.1 conserved protein of unknown function compare
PP_1113 +1.0 6.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4517 +1.0 2.0 conserved protein of unknown function compare
PP_0178 +1.0 5.6 putative efflux pump compare
PP_2581 +1.0 1.6 conserved protein of unknown function compare
PP_0176 +1.0 7.0 putative efflux transporter compare
PP_1553 +0.9 2.1 conserved protein of unknown function compare
PP_4669 +0.9 2.5 OmpA family protein compare
PP_3411 +0.9 1.5 conserved protein of unknown function compare
PP_5556 +0.9 3.4 putative bacteriophage lysis protein compare
PP_0138 +0.9 5.4 conserved membrane protein of unknown function compare
PP_3198 +0.9 1.6 Ferredoxin, 2Fe-2S compare
PP_1344 +0.9 0.7 conserved protein of unknown function compare
PP_0276 +0.9 1.4 Transcriptional regulator, Cro/CI family compare
PP_0775 +0.8 1.3 conserved protein of unknown function compare
PP_1994 +0.8 1.6 tRNA pseudouridine (38-40)synthase compare
PP_2389 +0.8 3.8 conserved protein of unknown function compare
PP_3052 +0.8 1.3 conserved protein of unknown function compare
PP_5533 +0.8 1.2 conserved protein of unknown function compare
PP_2387 +0.8 2.1 conserved protein of unknown function compare
PP_0177 +0.8 4.5 conserved protein of unknown function compare
PP_4561 +0.8 1.1 stress response protein compare
PP_3924 +0.8 1.8 conserved protein of unknown function compare
PP_4308 +0.8 2.0 Transcriptional regulator, AsnC family compare
PP_5469 +0.8 2.4 putative SAM-dependent methyltransferase compare
PP_5106 +0.8 2.3 conserved inner membrane protein compare
PP_4054 +0.8 2.3 conserved protein of unknown function compare
PP_4199 +0.8 1.1 putative Lipoprotein compare
PP_3363 +0.7 2.5 putative thymidylate kinase compare
PP_1366 +0.7 0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4268 +0.7 0.9 nucleoid-associated broad specificity regulator compare
PP_0961 +0.7 4.1 toluene tolerance protein compare
PP_2756 +0.7 1.4 conserved protein of unknown function compare
PP_4356 +0.7 3.2 Flagellar protein FliO compare
PP_4835 +0.7 0.7 conserved exported protein of unknown function compare
PP_3551 +0.7 1.3 DNA-binding response regulator, LuxR family compare
PP_1912 +0.7 3.4 Phosphate acyltransferase compare
PP_1697 +0.7 0.9 transcriptional regulator, GntR family compare
PP_0643 +0.7 1.6 protein of unknown function compare
PP_2845 +0.7 2.6 urease subunit alpha compare
PP_0066 +0.7 3.0 Ribosomal RNA small subunit methyltransferase B compare
PP_2210 +0.7 2.1 LysR family transcriptional regulator compare
PP_0513 +0.7 1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4891 +0.7 2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3192 +0.7 2.4 conserved protein of unknown function compare
PP_2299 +0.7 1.9 Trigger factor compare
PP_4609 +0.7 2.3 conserved membrane protein of unknown function compare
PP_3656 +0.7 5.0 putative Aromatic compound-specific porin compare
PP_0593 +0.7 0.7 putative ribosome-binding factor compare
PP_1713 +0.7 2.0 Transcriptional regulator PcaQ compare
PP_0508 +0.7 2.2 conserved exported protein of unknown function compare
PP_2814 +0.7 2.7 conserved protein of unknown function compare
PP_0380 +0.7 4.5 Coenzyme PQQ synthesis protein A compare
PP_3908 +0.7 1.8 conserved protein of unknown function compare
PP_5298 +0.6 2.6 putative glutamine amidotransferase compare
PP_0960 +0.6 2.6 phospholipid ABC transporter binding protein compare
PP_5008 +0.6 0.8 Poly granule-associated protein compare
PP_3637 +0.6 1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2740 +0.6 1.6 Transcriptional regulator, MerR family compare
PP_4720 +0.6 1.9 putative RNA binding protein compare
PP_0916 +0.6 2.0 Amino acid transporter LysE compare
PP_t11 +0.6 1.0 tRNA-Lys compare
PP_5184 +0.6 2.5 glutamylpolyamine synthetase compare
PP_2105 +0.6 2.0 conserved protein of unknown function compare
PP_1410 +0.6 0.9 conserved protein of unknown function compare
PP_5538 +0.6 3.5 putative ABC transporter, substrate-binding protein compare
PP_2873 +0.6 1.9 conserved protein of unknown function, UPF0145 family compare
PP_4597 +0.6 1.9 Cyclic pyranopterin monophosphate synthase compare
PP_1824 +0.6 1.3 Smr domain protein compare
PP_0398 +0.6 1.5 Thiosulfate sulfurtransferase GlpE compare
PP_3659 +0.6 4.1 transcriptional regulator, AraC family compare
PP_5359 +0.6 1.3 CobW/P47K family protein compare
PP_5644 +0.6 1.5 conserved membrane protein of unknown function compare
PP_4917 +0.6 1.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0893 +0.6 1.4 ThiJ/PfpI family protein compare
PP_1455 +0.6 2.1 conserved protein of unknown function compare
PP_0406 +0.6 2.9 Nucleotidyltransferase family protein compare
PP_4695 +0.6 3.6 Sensory box histidine kinase compare
PP_5119 +0.6 2.8 Transcriptional regulator, TetR family compare
PP_3247 +0.6 1.9 Transporter, bile acid/Na+ symporter family compare
PP_4710 +0.6 3.3 tRNA pseudouridine 55 synthase compare
PP_0958 +0.6 2.4 phospholipid ABC transporter ATP-binding subunit compare
PP_3658 +0.6 4.3 putative Aromatic compound MFS transporter compare
PP_5632 +0.6 2.6 enzyme subunit involved in allo-isoleucine metabolism compare
PP_2274 +0.6 2.8 conserved protein of unknown function compare
PP_2067 +0.6 1.4 putative EmrB/QacA family drug resistance transporter compare
PP_3365 +0.5 0.9 Acetolactate synthase compare
PP_2390 +0.5 2.1 Transcriptional regulator, LysR family compare
PP_2883 +0.5 0.6 conserved protein of unknown function compare
PP_1269 +0.5 1.0 Universal stress protein family compare
PP_0213 +0.5 1.8 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_5218 +0.5 2.3 DedA family protein compare
PP_0899 +0.5 3.0 putative Ferredoxin reductase compare
PP_0886 +0.5 1.9 conserved exported protein of unknown function compare
PP_4172 +0.5 3.2 conserved exported protein of unknown function compare
PP_4581 +0.5 1.3 putative amidotransferase compare
PP_0274 +0.5 0.9 putative transcriptional regulator containing HTH domain compare
PP_3804 +0.5 1.8 conserved exported protein of unknown function compare
PP_2716 +0.5 1.8 arsenate reductase compare
PP_2750 +0.5 1.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0122 +0.5 1.2 conserved exported protein of unknown function compare
PP_5505 +0.5 2.4 conserved transmembrane protein of unknown function compare
PP_2172 +0.5 1.9 conserved exported protein of unknown function compare
PP_3846 +0.5 3.3 (R)-stereoselective amidase compare
PP_3179 +0.5 1.9 Transcriptional regulator, LysR family compare
PP_2648 +0.5 1.6 Universal stress protein family compare
PP_1068 +0.5 1.8 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2834 +0.5 3.1 Putative D-galactarate dehydratase/Altronate dehydratase compare
PP_0725 +0.5 1.9 conserved hypothetical TPR repeat protein compare
PP_0630 +0.5 0.7 DNA gyrase inhibitor YacG compare
PP_5027 +0.5 1.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_3651 +0.5 3.8 Sensor histidine kinase/response regulator compare
PP_3367 +0.5 2.3 conserved protein of unknown function compare
PP_5572 +0.5 1.9 protein of unknown function compare
PP_3040 +0.5 1.6 Pyocin R2_PP, holin compare
PP_5580 +0.5 0.7 protein of unknown function compare
PP_1926 +0.5 1.7 putative phosphotyrosine-protein phosphatase compare
PP_3189 +0.5 2.7 cytosine deaminase / isoguanine deaminase compare
PP_2253 +0.5 1.1 Transcriptional regulator, GntR family compare
PP_2070 +0.5 1.1 Transcriptional regulator, AraC family compare
PP_4682 +0.5 1.9 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_4593 +0.5 0.8 conserved protein of unknown function compare
PP_2894 +0.5 1.4 conserved protein of unknown function compare
PP_0262 +0.5 1.8 conserved protein of unknown function compare
PP_0307 +0.5 1.8 conserved exported protein of unknown function compare
PP_2365 +0.5 1.3 Transcriptional regulator, AraC family compare
PP_4204 +0.5 1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5073 +0.5 0.6 conserved exported protein of unknown function compare
PP_4560 +0.5 1.9 putative Ribonuclease BN compare
PP_0241 +0.5 2.1 Transporter compare
PP_5200 +0.5 2.5 proline aminopeptidase P II compare
PP_5143 +0.5 1.0 conserved membrane protein of unknown function compare
PP_4944 +0.5 1.7 Carbamoyltransferase compare
PP_0105 +0.5 2.4 Cytochrome C oxidase assembly protein compare
PP_4214 +0.5 1.5 pyoverdine biosynthesis related protein compare
PP_3480 +0.5 1.0 conserved protein of unknown function compare
PP_2101 +0.5 2.2 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_5537 +0.5 1.2 conserved membrane protein of unknown function compare
PP_5055 +0.5 1.1 Sulfurtransferase compare
PP_5140 +0.5 1.8 Transcriptional regulator, MerR family compare
PP_5669 +0.5 2.0 ABC transporter related compare
PP_t13 +0.5 1.0 tRNA-Lys compare
PP_4370 +0.5 2.0 Flagellar hook-basal body complex protein FliE compare
PP_3085 +0.5 1.2 putative Transmembrane sensor compare
PP_5090 +0.5 0.9 putative cell division protein compare
PP_1770 +0.5 1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1045 +0.5 0.9 Type II secretion pathway protein XcpP compare
PP_1058 +0.5 3.7 conserved protein of unknown function compare
PP_4690 +0.4 1.6 Rieske 2Fe-2S family protein compare
PP_1245 +0.4 2.3 conserved exported protein of unknown function compare
PP_1832 +0.4 1.7 putative Oxidase compare
PP_5144 +0.4 1.8 conserved protein of unknown function compare
PP_5456 +0.4 0.8 conserved protein of unknown function compare
PP_1055 +0.4 0.6 Type II secretion pathway protein GspN compare
PP_5704 +0.4 1.5 conserved protein of unknown function compare
PP_4505 +0.4 2.0 Sensor histidine kinase compare
PP_2330 +0.4 1.9 conserved protein of unknown function compare
PP_5687 +0.4 1.4 putative permease of the major facilitator superfamily compare
PP_5658 +0.4 1.1 protein of unknown function compare
PP_4530 +0.4 2.2 conserved protein of unknown function compare
PP_1299 +0.4 2.1 putative amino acid ABC transporter - membrane subunit compare
PP_3657 +0.4 2.7 P-nitrobenzoate reductase NfnB compare
PP_5594 +0.4 0.9 conserved protein of unknown function compare
PP_1761 +0.4 2.9 diguanylate cyclase with phosphodiesterase domain compare
PP_0784 +0.4 1.6 conserved protein of unknown function compare
PP_2745 +0.4 1.2 Universal stress protein family compare
PP_3241 +0.4 0.6 conserved exported protein of unknown function compare
PP_0679 +0.4 1.8 conserved exported protein of unknown function compare
PP_0805 +0.4 2.9 Outer membrane efflux protein compare
PP_3443 +0.4 2.3 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_5110 +0.4 1.1 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1561 +0.4 1.9 putative Phage holin compare
PP_0880 +0.4 1.1 dipeptide ABC transporter - putative membrane subunit compare
PP_4340 +0.4 1.2 response regulator for chemotactic signal transduction compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Hexanoic acid in Pseudomonas putida KT2440

For carbon source Hexanoic acid across organisms