Experiment set15IT068 for Pseudomonas putida KT2440

Compare to:

Butyl stearate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2137 -6.4 -4.4 beta-ketoadipyl CoA thiolase, beta component compare
PP_0368 -5.7 -15.6 putative Acyl-CoA dehydrogenase compare
PP_2136 -5.6 -6.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0691 -5.6 -6.6 Glutamate 5-kinase compare
PP_4909 -5.2 -10.9 phosphoserine phosphatase compare
PP_5659 -5.2 -4.5 protein of unknown function compare
PP_2371 -4.7 -8.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4700 -4.6 -5.5 pantothenate synthetase compare
PP_1986 -4.6 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_0290 -4.5 -8.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4058 -4.5 -14.2 1,4-alpha-glucan branching enzyme compare
PP_4680 -4.4 -14.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -4.4 -9.2 3-isopropylmalate dehydrogenase compare
PP_4679 -4.2 -8.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -4.2 -7.6 tryptophan synthase alpha chain compare
PP_0356 -4.2 -9.9 malate synthase G compare
PP_5128 -4.2 -7.2 Dihydroxy-acid dehydratase compare
PP_4678 -4.1 -14.8 Ketol-acid reductoisomerase compare
PP_5095 -4.1 -2.8 pyrroline-5-carboxylate reductase compare
PP_3999 -4.0 -11.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1985 -4.0 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_5185 -4.0 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4116 -3.9 -13.0 isocitrate lyase compare
PP_2903 -3.9 -2.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0967 -3.9 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -3.8 -8.5 tryptophan synthase beta chain compare
PP_0834 -3.8 -2.8 Sec translocation complex subunit YajC compare
PP_0184 -3.7 -6.7 Argininosuccinate lyase compare
PP_4999 -3.7 -2.6 dihydroorotase-like protein compare
PP_4890 -3.6 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -3.6 -10.2 Branched-chain-amino-acid aminotransferase compare
PP_1088 -3.5 -13.4 Argininosuccinate synthase compare
PP_2018 -3.5 -5.7 adhesin-associated BNR repeat protein (from data) compare
PP_5289 -3.5 -5.7 Acetylglutamate kinase compare
PP_0292 -3.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0766 -3.4 -14.8 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_5097 -3.4 -13.7 homoserine O-acetyltransferase compare
PP_2019 -3.3 -16.6 adhesin-associated MmpL efflux pump (from data) compare
PP_0289 -3.3 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5015 -3.3 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0966 -3.2 -9.6 Histidinol dehydrogenase compare
PP_0422 -3.2 -8.1 Indole-3-glycerol phosphate synthase compare
PP_4799 -3.2 -4.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1079 -3.2 -6.9 Ornithine carbamoyltransferase compare
PP_5155 -3.2 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4723 -3.2 -12.5 Carbamoyl-phosphate synthase large chain compare
PP_5098 -3.0 -9.5 methionine biosynthesis protein MetW compare
PP_0765 -3.0 -13.8 putative adhesin (DUF1302) (from data) compare
PP_4724 -3.0 -6.8 Carbamoyl-phosphate synthase small chain compare
PP_1216 -3.0 -3.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0965 -3.0 -13.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3248 -2.9 -2.0 Dyp-type peroxidase family protein compare
PP_4696 -2.9 -4.4 Nitrogen regulation protein NR(I) compare
PP_4699 -2.8 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2370 -2.8 -2.6 conserved protein of unknown function compare
PP_4121 -2.8 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1995 -2.8 -10.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4943 -2.7 -2.6 putative Glycosyl transferase compare
PP_1237 -2.7 -3.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2001 -2.6 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_4695 -2.5 -9.7 Sensory box histidine kinase compare
PP_0421 -2.5 -7.4 Anthranilate phosphoribosyltransferase compare
PP_0435 -2.5 -17.3 Peptidase, M23/M37 family compare
PP_2000 -2.5 -3.7 amidophosphoribosyl transferase compare
PP_1826 -2.4 -3.2 Hydrolase, isochorismatase family compare
PP_0767 -2.4 -8.8 Transcriptional regulator, LuxR family compare
PP_3821 -2.4 -8.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5227 -2.4 -7.6 diaminopimelate decarboxylase compare
PP_1664 -2.4 -5.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1025 -2.3 -9.9 2-isopropylmalate synthase compare
PP_1734 -2.3 -4.3 Probable septum site-determining protein MinC compare
PP_0417 -2.3 -14.3 Anthranilate synthase component 1 compare
PP_1428 -2.3 -2.1 Sigma factor AlgU negative regulatory protein compare
PP_2433 -2.2 -3.9 conserved protein of unknown function compare
PP_4122 -2.2 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4693 -2.2 -6.4 RNA polymerase-binding transcription factor DksA compare
PP_5014 -2.1 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1629 -2.1 -6.2 Protein RecA compare
PP_1353 -2.1 -2.4 conserved membrane protein of unknown function compare
PP_4364 -2.0 -4.3 putative Anti-sigma F factor antagonist compare
PP_2327 -2.0 -5.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1654 -2.0 -4.4 cysteine synthase B compare
PP_2356 -1.9 -8.8 putative Phytochrome family protein compare
PP_4120 -1.9 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_5309 -1.9 -1.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2087 -1.9 -4.0 CmpX protein compare
PP_4940 -1.9 -6.0 Putative glycosyltransferase compare
PP_1778 -1.9 -5.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1764 -1.8 -7.9 Phosphoglycolate phosphatase 2 compare
PP_0856 -1.8 -1.8 conserved lipoprotein of unknown function compare
PP_2145 -1.8 -9.4 beta-N-acetylglucosaminidase compare
PP_0063 -1.7 -3.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0434 -1.7 -11.8 Anhydro-N-acetylmuramic acid kinase compare
PP_4549 -1.7 -8.9 long-chain-fatty-acid/CoA ligase compare
PP_1968 -1.7 -4.7 TetR family transcriptional regulator compare
PP_0420 -1.7 -6.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5045 -1.6 -5.0 tRNA sulfurtransferase compare
PP_4098 -1.6 -2.6 UvrABC system protein C compare
PP_4964 -1.6 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_5085 -1.6 -5.7 malic enzyme B compare
PP_0405 -1.6 -13.0 conserved protein of unknown function compare
PP_4782 -1.5 -4.2 Phosphomethylpyrimidine kinase compare
PP_4129 -1.5 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4902 -1.5 -1.9 Oligoribonuclease compare
PP_4565 -1.5 -9.9 Isocitrate dehydrogenase kinase/phosphatase compare
PP_3790 -1.5 -7.1 diaminopimelate epimerase compare
PP_2354 -1.5 -8.1 Sensory box histidine kinase/response regulator compare
PP_4004 -1.5 -2.7 DNA translocase FtsK compare
PP_1328 -1.4 -1.3 Protein MraZ compare
PP_0246 -1.4 -1.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_1733 -1.4 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0960 -1.4 -5.6 phospholipid ABC transporter binding protein compare
PP_0735 -1.4 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_0901 -1.4 -4.9 DNA-binding response regulator compare
PP_1355 -1.4 -12.4 Muropeptide permease AmpG compare
PP_1187 -1.4 -5.1 sensor protein compare
PP_4130 -1.4 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1318 -1.3 -7.9 Cytochrome b compare
PP_2337 -1.3 -2.6 aconitate isomerase compare
PP_2163 -1.3 -5.8 VacJ lipoprotein compare
PP_4131 -1.3 -4.6 NADH-quinone oxidoreductase subunit N compare
PP_0035 -1.3 -3.4 putative bactoprenol-linked glycose transferase compare
PP_1317 -1.3 -5.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0002 -1.3 -5.3 probable chromosome partition protein compare
PP_3105 -1.3 -1.5 conserved membrane protein of unknown function compare
PP_1663 -1.3 -4.1 conserved exported protein of unknown function compare
PP_0065 -1.3 -2.3 NAD-binding component of TrK potassium transporter compare
PP_4629 -1.3 -5.4 Sensory box protein compare
PP_5346 -1.2 -6.4 pyruvate carboxylase subunit B compare
PP_3649 -1.2 -3.4 Transcriptional regulator, GntR family compare
PP_1364 -1.2 -7.3 conserved exported protein of unknown function compare
PP_4874 -1.2 -0.8 50S ribosomal protein L9 compare
PP_2475 -1.2 -3.6 Transcriptional regulator, TetR family compare
PP_1493 -1.2 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2806 -1.2 -3.3 Transcriptional regulator, TetR family compare
PP_1319 -1.1 -5.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0959 -1.1 -1.9 phospholipid ABC transporter compare
PP_2402 -1.1 -2.2 putative Sensor histidine kinase compare
PP_5352 -1.1 -6.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4320 -1.1 -5.8 cytochrome c-type biogenesis protein compare
PP_0164 -1.1 -5.6 conserved protein of unknown function compare
PP_5028 -1.1 -2.8 proline iminopeptidase compare
PP_1779 -1.1 -3.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5311 -1.1 -5.5 putative signal transduction protein compare
PP_4008 -1.1 -5.9 ATP-dependent serine protease compare
PP_4124 -1.1 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_3505 -1.1 -1.9 conserved protein of unknown function compare
PP_4824 -1.1 -4.4 Sensor histidine kinase/response regulator compare
PP_3508 -1.1 -2.6 Protein CobW compare
PP_0379 -1.1 -6.4 Coenzyme PQQ synthesis protein B compare
PP_1233 -1.1 -2.7 sulfurtransferase compare
PP_1468 -1.1 -2.1 Tyrosine recombinase XerD compare
PP_5230 -1.1 -2.8 Tyrosine recombinase XerC compare
PP_5198 -1.1 -1.9 conserved protein of unknown function compare
PP_4642 -1.1 -1.6 Cyclic diguanosine monophosphate-binding protein compare
PP_5104 -1.1 -4.7 thiazole synthase compare
PP_5705 -1.1 -1.7 protein of unknown function compare
PP_3833 -1.1 -3.3 Response regulator compare
PP_2336 -1.0 -2.0 aconitate hydratase 1 compare
PP_4989 -1.0 -3.3 Protein PilJ compare
PP_4342 -1.0 -2.3 flagellar synthesis regulator, putative ATPase compare
PP_5310 -1.0 -3.6 junction-specific ATP-dependent DNA helicase compare
PP_1217 -1.0 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4988 -1.0 -4.5 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0291 -1.0 -1.2 conserved protein of unknown function compare
PP_1824 -1.0 -1.4 Smr domain protein compare
PP_1304 -1.0 -6.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5347 -1.0 -6.4 pyruvate carboxylase subunit A compare
PP_1181 -1.0 -5.0 DNA-binding response regulator compare
PP_5652 -1.0 -1.5 conserved protein of unknown function, phage origin compare
PP_0643 -1.0 -2.2 protein of unknown function compare
PP_4959 -1.0 -6.9 diguanylate cyclase compare
PP_5053 -1.0 -2.7 Protein-export protein SecB compare
PP_3392 -1.0 -1.3 conserved protein of unknown function compare
PP_1076 -1.0 -4.5 aquaglyceroporin compare
PP_0574 -0.9 -7.0 DNA-binding response regulator, LuxR family compare
PP_5161 -0.9 -5.2 putative lysophospholipase compare
PP_1075 -0.9 -6.8 glycerol kinase compare
PP_4835 -0.9 -1.6 conserved exported protein of unknown function compare
PP_0902 -0.9 -6.8 integral membrane sensor signal transduction histidine kinase compare
PP_3761 -0.9 -6.2 Sensor histidine kinase/response regulator compare
PP_5075 -0.9 -5.9 glutamate synthase (NADPH) beta subunit compare
PP_4355 -0.9 -2.0 flagellar export apparatus subunit compare
PP_0310 -0.9 -5.8 putative dimethylglycine dehydrogenase subunit compare
PP_0789 -0.9 -4.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2328 -0.9 -3.2 Phosphoadenosine phosphosulfate reductase compare
PP_1430 -0.9 -5.3 putative periplasmic serine endoprotease DegP-like compare
PP_0414 -0.9 -3.8 Polyamine ABC transporter, permease protein compare
PP_5495 -0.9 -1.7 protein of unknown function compare
PP_0190 -0.9 -3.6 putative disulfide bond formation protein B compare
PP_3738 -0.9 -2.7 putative Transcriptional regulator VanR compare
PP_0413 -0.9 -6.4 Polyamine ABC transporter, permease protein compare
PP_2504 -0.9 -2.8 putative tautomerase K2 compare
PP_4150 -0.9 -3.5 microcin C transporter - ATP binding subunit compare
PP_0695 -0.9 -2.8 conserved protein of unknown function compare
PP_2889 -0.9 -2.6 putative Transmembrane regulator PrtR compare
PP_0312 -0.9 -4.3 electron transfer flavoprotein, alpha subunit compare
PP_1224 -0.8 -4.2 periplasmic subunit of the TolQRA transport system compare
PP_4917 -0.8 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Butyl stearate in Pseudomonas putida KT2440

For carbon source Butyl stearate across organisms