Experiment set15IT068 for Pseudomonas putida KT2440

Compare to:

Butyl stearate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +3.0 19.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_1799 +2.7 21.6 GDP-mannose 4,6-dehydratase compare
PP_1780 +2.5 22.2 putative mannosyltransferase compare
PP_1058 +2.3 20.6 conserved protein of unknown function compare
PP_0547 +2.2 10.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0138 +2.1 14.2 conserved membrane protein of unknown function compare
PP_5058 +2.0 11.6 Carboxy-terminal-processing protease compare
PP_0725 +1.7 9.5 conserved hypothetical TPR repeat protein compare
PP_5145 +1.7 16.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0948 +1.7 7.4 Phosphocarrier protein HPr compare
PP_4785 +1.2 7.4 conserved exported protein of unknown function compare
PP_5232 +1.2 4.4 conserved protein of unknown function compare
PP_1803 +1.2 9.7 UDP-sugar epimerase compare
PP_1802 +1.1 10.1 glycosyl transferase compare
PP_1776 +1.1 9.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1801 +1.0 8.5 Glycosyl transferase WbpY compare
PP_1805 +1.0 9.2 Polysaccharide biosynthesis protein compare
PP_2899 +1.0 2.2 conserved exported protein of unknown function compare
PP_4317 +1.0 3.1 conserved protein of unknown function compare
PP_3971 +0.9 1.6 conserved protein of unknown function compare
PP_3411 +0.9 1.7 conserved protein of unknown function compare
PP_4961 +0.9 1.6 putative Lipoprotein compare
PP_3551 +0.9 2.4 DNA-binding response regulator, LuxR family compare
PP_4217 +0.9 8.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0540 +0.9 4.2 conserved inner membrane protein compare
PP_5456 +0.9 1.4 conserved protein of unknown function compare
PP_4952 +0.8 2.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1113 +0.8 5.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0132 +0.8 4.7 Alginate biosynthesis sensor protein KinB compare
PP_1800 +0.8 6.3 Oxidoreductase Rmd compare
PP_4308 +0.8 2.7 Transcriptional regulator, AsnC family compare
PP_2210 +0.8 3.4 LysR family transcriptional regulator compare
PP_5448 +0.8 2.3 conserved protein of unknown function compare
PP_1562 +0.8 1.5 putative Phage terminase, small subunit compare
PP_5288 +0.8 5.6 Phosphomannomutase/phosphoglucomutase compare
PP_2581 +0.8 1.6 conserved protein of unknown function compare
PP_3052 +0.8 1.4 conserved protein of unknown function compare
PP_0319 +0.7 1.8 conserved protein of unknown function compare
PP_2681 +0.7 2.3 coenzyme PQQ synthesis protein D compare
PP_4406 +0.7 1.4 conserved protein of unknown function compare
PP_3840 +0.7 1.5 conserved protein of unknown function compare
PP_0133 +0.7 5.7 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PP_2972 +0.7 1.4 conserved protein of unknown function compare
PP_4054 +0.7 2.1 conserved protein of unknown function compare
PP_2387 +0.7 1.9 conserved protein of unknown function compare
PP_1301 +0.7 4.0 quality control serine endoprotease DegS compare
PP_4504 +0.7 1.0 conserved exported protein of unknown function compare
PP_1804 +0.7 5.4 Glycosyl transferase WbpL compare
PP_0846 +0.7 1.4 DnaK-like molecular chaperone specific for IscU compare
PP_3198 +0.7 1.0 Ferredoxin, 2Fe-2S compare
PP_4159 +0.7 2.1 Potassium-transporting ATPase C chain compare
PP_2105 +0.7 2.7 conserved protein of unknown function compare
PP_3522 +0.7 3.0 conserved protein of unknown function compare
PP_2745 +0.7 1.7 Universal stress protein family compare
PP_3580 +0.7 1.4 conserved protein of unknown function compare
PP_3762 +0.7 3.3 Response regulator compare
PP_1427 +0.7 3.6 RNA polymerase sigma E factor compare
PP_4593 +0.7 1.4 conserved protein of unknown function compare
PP_2306 +0.6 1.7 conserved exported protein of unknown function compare
PP_1410 +0.6 1.2 conserved protein of unknown function compare
PP_3651 +0.6 5.0 Sensor histidine kinase/response regulator compare
PP_5428 +0.6 2.7 conserved exported protein of unknown function compare
PP_4337 +0.6 3.4 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0339 +0.6 2.1 Pyruvate dehydrogenase E1 component compare
PP_5331 +0.6 3.6 Long-chain acyl-CoA thioester hydrolase compare
PP_5283 +0.6 4.0 periplasmic dipeptide transport protein compare
PP_0340 +0.6 4.8 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0119 +0.6 2.4 putative zinc uptake regulation protein ZUR compare
PP_5106 +0.6 2.2 conserved inner membrane protein compare
PP_1871 +0.6 2.9 Protease HtpX compare
PP_4228 +0.6 3.1 conserved protein of unknown function compare
PP_2999 +0.6 1.3 Glyoxalase family protein compare
PP_2060 +0.6 1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5146 +0.6 3.5 RNA pyrophosphohydrolase compare
PP_5552 +0.6 2.0 conserved protein of unknown function compare
PP_1226 +0.6 2.6 pre-queuosine 0 synthase compare
PP_2388 +0.6 2.7 Transporter, LysE family compare
PP_2457 +0.6 3.2 DNA-binding transcriptional repressor compare
PP_2765 +0.6 1.9 putative Sulfonate monooxygenase MsuD compare
PP_5441 +0.6 2.0 protein of unknown function compare
PP_3929 +0.6 1.5 conserved protein of unknown function compare
PP_0891 +0.6 1.9 conserved exported protein of unknown function compare
PP_3883 +0.6 1.2 putative Phage holin compare
PP_3098 +0.6 0.9 conserved protein of unknown function compare
PP_5699 +0.6 3.6 putative iron uptake protein compare
PP_0775 +0.6 0.9 conserved protein of unknown function compare
PP_0801 +0.6 1.0 conserved exported protein of unknown function compare
PP_0593 +0.5 0.7 putative ribosome-binding factor compare
PP_1114 +0.5 1.8 SEC-C domain protein compare
PP_4828 +0.5 0.8 Precorrin-8X methylmutase compare
PP_4893 +0.5 4.0 GTPase HflX compare
PP_1575 +0.5 1.0 conserved protein of unknown function compare
PP_1697 +0.5 1.7 transcriptional regulator, GntR family compare
PP_2764 +0.5 2.1 FMN reductase (NADPH) compare
PP_1062 +0.5 1.6 MutT/nudix family protein compare
PP_4199 +0.5 0.8 putative Lipoprotein compare
PP_4462 +0.5 3.4 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PP_4370 +0.5 1.8 Flagellar hook-basal body complex protein FliE compare
PP_4208 +0.5 3.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2820 +0.5 1.0 HTH-type transcriptional regulator nfxB compare
PP_0679 +0.5 2.0 conserved exported protein of unknown function compare
PP_3525 +0.5 2.4 conserved exported protein of unknown function compare
PP_0129 +0.5 4.2 GGDEF domain protein compare
PP_5337 +0.5 2.3 LysR family transcriptional regulator compare
PP_1548 +0.5 1.5 conserved protein of unknown function compare
PP_5008 +0.5 1.0 Poly granule-associated protein compare
PP_0886 +0.5 2.1 conserved exported protein of unknown function compare
PP_1993 +0.5 3.8 putative motility protein fimV compare
PP_4162 +0.5 1.9 conserved membrane protein of unknown function compare
PP_5533 +0.5 0.8 conserved protein of unknown function compare
PP_3662 +0.5 3.0 conserved protein of unknown function compare
PP_1344 +0.5 1.0 conserved protein of unknown function compare
PP_2389 +0.5 2.6 conserved protein of unknown function compare
PP_5143 +0.5 1.0 conserved membrane protein of unknown function compare
PP_2597 +0.5 3.0 conserved protein of unknown function compare
PP_4845 +0.5 1.6 putative Urea ABC transporter, ATP-binding protein compare
PP_4837 +0.5 2.3 conserved protein of unknown function compare
PP_0827 +0.5 2.2 putative phosphonate transport system permease protein PtxC compare
PP_2323 +0.5 3.8 conserved protein of unknown function compare
PP_0306 +0.5 1.6 conserved protein of unknown function compare
PP_1836 +0.5 2.0 putative metal transporter, ZIP family compare
PP_5194 +0.5 2.7 aminomethyltransferase compare
PP_1829 +0.5 1.5 Hydrolase, alpha/beta fold family compare
PP_1444 +0.5 3.5 quinoprotein glucose dehydrogenase compare
PP_3893 +0.5 2.7 putative Phage DNA helicase compare
PP_0254 +0.5 1.7 conserved protein of unknown function compare
PP_0048 +0.5 0.8 conserved protein of unknown function compare
PP_4196 +0.5 1.2 conserved exported protein of unknown function compare
PP_0905 +0.5 1.4 conserved exported protein of unknown function compare
PP_4786 +0.5 1.6 conserved protein of unknown function compare
PP_1511 +0.5 1.8 conserved protein of unknown function compare
PP_2025 +0.4 2.0 Exonuclease SbcD compare
PP_5003 +0.4 2.9 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_0697 +0.4 2.9 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_1112 +0.4 2.6 conserved membrane protein of unknown function compare
PP_2622 +0.4 2.2 conserved protein of unknown function compare
PP_2168 +0.4 2.8 Transaldolase compare
PP_4060 +0.4 3.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2846 +0.4 1.2 urease accessory protein compare
PP_3546 +0.4 2.8 Sensory box histidine kinase/response regulator compare
PP_4569 +0.4 1.7 conserved protein of unknown function compare
PP_5159 +0.4 1.3 conserved protein of unknown function compare
PP_3228 +0.4 2.3 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_1855 +0.4 1.4 conserved exported protein of unknown function compare
PP_5482 +0.4 2.6 protein of unknown function compare
PP_5063 +0.4 2.1 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_2214 +0.4 1.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1867 +0.4 2.4 conserved protein of unknown function compare
PP_3884 +0.4 1.5 Phage holin, lambda family compare
PP_3247 +0.4 1.6 Transporter, bile acid/Na+ symporter family compare
PP_5519 +0.4 2.0 conserved protein of unknown function of phage origin compare
PP_2712 +0.4 1.8 conserved exported protein of unknown function compare
PP_1553 +0.4 0.8 conserved protein of unknown function compare
PP_0653 +0.4 1.0 conserved protein of unknown function compare
PP_5572 +0.4 1.9 protein of unknown function compare
PP_5483 +0.4 1.2 conserved protein of unknown function compare
PP_1236 +0.4 2.0 putative Glycine cleavage system transcriptional repressor compare
PP_2939 +0.4 1.9 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_0908 +0.4 2.4 conserved exported protein of unknown function compare
PP_2560 +0.4 1.5 alkaline protease secretion transporter ATP-binding protein compare
PP_3192 +0.4 1.0 conserved protein of unknown function compare
PP_0152 +0.4 1.0 conserved exported protein of unknown function compare
PP_3380 +0.4 1.4 2-ketogluconate utilization repressor compare
PP_2309 +0.4 0.8 conserved protein of unknown function compare
PP_2267 +0.4 2.4 putative Phage single-stranded DNA-binding protein compare
PP_4938 +0.4 2.3 putative Glycosyl transferase compare
PP_1558 +0.4 2.1 conserved protein of unknown function compare
PP_0893 +0.4 0.8 ThiJ/PfpI family protein compare
PP_2773 +0.4 0.8 conserved protein of unknown function compare
PP_0273 +0.4 1.3 conserved protein of unknown function compare
PP_5083 +0.4 1.5 putative Type IV pili biogenesis protein PilM compare
PP_5140 +0.4 1.8 Transcriptional regulator, MerR family compare
PP_2845 +0.4 1.2 urease subunit alpha compare
PP_2054 +0.4 1.3 putative DNA-binding transcriptional regulator compare
PP_3559 +0.4 1.8 glycine betaine ABC transporter (permease) compare
PP_3035 +0.4 1.4 conserved protein of unknown function compare
PP_0163 +0.4 3.1 putative transcriptional regulator compare
PP_4803 +0.4 3.0 D-alanyl-D-alanine carboxypeptidase compare
PP_1215 +0.4 0.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_4368 +0.4 2.3 flagellar motor switch protein compare
PP_2509 +0.4 1.3 conserved protein of unknown function compare
PP_2814 +0.4 1.3 conserved protein of unknown function compare
PP_2150 +0.4 1.3 putative Thiamine biosynthesis lipoprotein compare
PP_0240 +0.4 0.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4464 +0.4 2.5 Transcriptional regulator, LysR family compare
PP_1736 +0.4 1.4 conserved protein of unknown function compare
PP_5696 +0.4 1.8 conserved protein of unknown function compare
PP_0578 +0.4 2.0 putative Methyltransferase compare
PP_4546 +0.4 1.3 ATP-dependent helicase HrpA compare
PP_1508 +0.4 2.1 conserved protein of unknown function compare
PP_1385 +0.4 3.4 Probable efflux pump membrane transporter TtgB compare
PP_3726 +0.4 0.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_2299 +0.4 1.2 Trigger factor compare
PP_2742 +0.4 1.8 conserved protein of unknown function compare
PP_5255 +0.4 2.5 putative hydrolase compare
PP_2002 +0.4 0.9 putative enzyme compare
PP_4108 +0.4 1.5 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_1716 +0.4 0.9 Transcriptional regulator, Cro/CI family compare
PP_0916 +0.4 1.3 Amino acid transporter LysE compare
PP_2499 +0.4 0.4 conserved protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Butyl stearate in Pseudomonas putida KT2440

For carbon source Butyl stearate across organisms