Experiment set15IT065 for Pseudomonas putida KT2440

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_2414 -5.9 -3.4 conserved exported protein of unknown function compare
PP_3553 -5.8 -8.8 AMP-binding domain protein conserved
PP_0422 -5.7 -6.1 Indole-3-glycerol phosphate synthase compare
PP_2371 -5.7 -4.0 Sulphite reductase hemoprotein, beta subunit compare
PP_3754 -5.4 -6.4 Beta-ketothiolase BktB compare
PP_4909 -5.3 -3.7 phosphoserine phosphatase compare
PP_0293 -5.2 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4116 -5.1 -12.8 isocitrate lyase compare
PP_2327 -5.0 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -5.0 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1826 -5.0 -3.2 Hydrolase, isochorismatase family compare
PP_2370 -4.9 -4.7 conserved protein of unknown function compare
PP_1716 -4.9 -2.5 Transcriptional regulator, Cro/CI family compare
PP_0025 -4.8 -1.4 hypothetical protein compare
PP_0356 -4.8 -8.4 malate synthase G compare
PP_1986 -4.8 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_1988 -4.6 -8.8 3-isopropylmalate dehydrogenase compare
PP_5098 -4.5 -9.4 methionine biosynthesis protein MetW compare
PP_0893 -4.5 -2.9 ThiJ/PfpI family protein compare
PP_0967 -4.5 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4679 -4.5 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.4 -13.8 Ketol-acid reductoisomerase compare
PP_4364 -4.4 -4.5 putative Anti-sigma F factor antagonist compare
PP_1985 -4.3 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_0082 -4.3 -3.0 tryptophan synthase alpha chain compare
PP_0048 -4.3 -1.3 conserved protein of unknown function compare
PP_1088 -4.2 -11.5 Argininosuccinate synthase compare
PP_0630 -4.1 -1.2 DNA gyrase inhibitor YacG compare
PP_0966 -4.1 -9.4 Histidinol dehydrogenase compare
PP_2217 -4.0 -3.5 enoyl-CoA hydratase compare
PP_1381 -4.0 -1.2 4-carboxymuconolactone decarboxylase compare
PP_1208 -4.0 -2.7 conserved protein of unknown function, SlyX family compare
PP_0292 -4.0 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0691 -4.0 -4.4 Glutamate 5-kinase compare
PP_3833 -3.9 -3.8 Response regulator compare
PP_5014 -3.9 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4700 -3.9 -2.7 pantothenate synthetase compare
PP_5659 -3.9 -3.4 protein of unknown function compare
PP_0289 -3.8 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -3.8 -7.1 Dihydroxy-acid dehydratase compare
PP_4723 -3.7 -11.7 Carbamoyl-phosphate synthase large chain compare
PP_4680 -3.6 -9.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -3.5 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3552 -3.5 -9.5 Sensory box histidine kinase compare
PP_0083 -3.5 -5.8 tryptophan synthase beta chain compare
PP_5114 -3.3 -2.1 putative adenine methyltransferase compare
PP_5097 -3.3 -9.0 homoserine O-acetyltransferase compare
PP_5085 -3.3 -5.9 malic enzyme B compare
PP_0164 -3.3 -6.3 conserved protein of unknown function compare
PP_3554 -3.2 -11.5 Acyl-CoA dehydrogenase family protein compare
PP_3511 -3.2 -5.2 Branched-chain-amino-acid aminotransferase compare
PP_0417 -3.1 -11.5 Anthranilate synthase component 1 compare
PP_1025 -3.0 -8.2 2-isopropylmalate synthase compare
PP_4890 -3.0 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0643 -3.0 -2.2 protein of unknown function compare
PP_0246 -3.0 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_0420 -2.9 -6.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4724 -2.9 -3.5 Carbamoyl-phosphate synthase small chain compare
PP_2328 -2.9 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_5289 -2.9 -3.8 Acetylglutamate kinase compare
PP_3946 -2.9 -1.2 HTH-type transcriptional repressor NicR compare
PP_3756 -2.9 -4.0 TetR family transcriptional regulator compare
PP_1216 -2.9 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1589 -2.9 -8.9 uridylyltransferase compare
PP_5022 -2.8 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_0290 -2.8 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0965 -2.7 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4058 -2.7 -9.9 1,4-alpha-glucan branching enzyme compare
PP_3755 -2.7 -3.8 3-hydroxybutyryl-CoA dehydrogenase compare
PP_t57 -2.7 -2.9 tRNA-Arg compare
PP_5095 -2.7 -1.6 pyrroline-5-carboxylate reductase compare
PP_3999 -2.6 -7.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4488 -2.6 -5.2 conserved exported protein of unknown function conserved
PP_2001 -2.6 -5.6 O-succinylhomoserine sulfhydrylase compare
PP_2302 -2.6 -1.8 DNA-binding, ATP-dependent protease compare
PP_0421 -2.6 -5.8 Anthranilate phosphoribosyltransferase compare
PP_1214 -2.4 -1.7 putative transcriptional regulatory protein compare
PP_0801 -2.4 -1.2 conserved exported protein of unknown function compare
PP_1935 -2.4 -2.6 Transcriptional regulator, Cro/CI family compare
PP_3105 -2.4 -2.6 conserved membrane protein of unknown function compare
PP_4940 -2.4 -5.1 Putative glycosyltransferase compare
PP_2356 -2.3 -6.0 putative Phytochrome family protein compare
PP_4999 -2.3 -1.5 dihydroorotase-like protein compare
PP_4993 -2.3 -1.6 Glutathione synthetase compare
PP_0184 -2.3 -4.4 Argininosuccinate lyase compare
PP_1528 -2.3 -0.9 conserved protein of unknown function compare
PP_3649 -2.3 -4.2 Transcriptional regulator, GntR family compare
PP_1938 -2.2 -1.9 conserved protein of unknown function compare
PP_1995 -2.2 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2402 -2.2 -2.5 putative Sensor histidine kinase compare
PP_2337 -2.1 -1.5 aconitate isomerase compare
PP_2354 -2.1 -6.9 Sensory box histidine kinase/response regulator compare
PP_5051 -2.1 -1.7 conserved protein of unknown function compare
PP_0834 -2.1 -1.5 Sec translocation complex subunit YajC compare
PP_4199 -2.0 -1.0 putative Lipoprotein compare
PP_1079 -2.0 -3.7 Ornithine carbamoyltransferase compare
PP_0291 -2.0 -2.5 conserved protein of unknown function compare
PP_3726 -2.0 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_2087 -2.0 -2.6 CmpX protein compare
PP_2309 -2.0 -1.4 conserved protein of unknown function compare
PP_5217 -1.9 -11.5 Polyphosphate kinase compare
PP_4696 -1.9 -1.3 Nitrogen regulation protein NR(I) compare
PP_4799 -1.9 -2.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3328 -1.9 -1.7 putative Ring-cleaving dioxygenase compare
PP_4699 -1.9 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0593 -1.9 -0.8 putative ribosome-binding factor compare
PP_5000 -1.8 -0.6 peptidase component of the ATP-dependent HslVU protease compare
PP_4952 -1.8 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4943 -1.7 -1.0 putative Glycosyl transferase compare
PP_0276 -1.7 -1.0 Transcriptional regulator, Cro/CI family compare
PP_3392 -1.7 -1.6 conserved protein of unknown function compare
PP_5571 -1.7 -1.3 conserved protein of unknown function compare
PP_5167 -1.7 -1.7 conserved hypothetical protein compare
PP_5017 -1.7 -1.0 Sec-independent protein translocase protein TatB compare
PP_0949 -1.7 -4.0 putative ATP-binding protein UPF0042 compare
PP_3286 -1.7 -3.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2326 -1.7 -5.2 Universal stress protein compare
PP_5155 -1.7 -2.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0092 -1.7 -3.6 putative lipoprotein compare
PP_2299 -1.7 -2.5 Trigger factor compare
PP_4936 -1.6 -4.7 O-antigen polymerase compare
PP_3753 -1.6 -2.9 Transcriptional regulator, AraC family compare
PP_4681 -1.6 -1.8 conserved protein of unknown function compare
PP_5054 -1.6 -1.9 glutaredoxin 3 compare
PP_5610 -1.6 -1.7 protein of unknown function compare
PP_0879 -1.6 -2.5 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1096 -1.6 -2.1 putative electron transport complex protein compare
PP_0694 -1.6 -2.9 conserved protein of unknown function compare
PP_5441 -1.6 -2.0 protein of unknown function compare
PP_2145 -1.6 -4.8 beta-N-acetylglucosaminidase compare
PP_5198 -1.6 -1.8 conserved protein of unknown function compare
PP_5453 -1.5 -1.9 conserved protein of unknown function compare
PP_5704 -1.5 -3.1 conserved protein of unknown function compare
PP_4136 -1.5 -1.1 Transcriptional regulator, LuxR family compare
PP_3597 -1.5 -2.2 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_0565 -1.5 -2.6 putative enzyme compare
PP_0787 -1.5 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2378 -1.5 -1.7 Fe/S biogenesis protein NfuA compare
PP_2000 -1.4 -1.7 amidophosphoribosyl transferase compare
PP_3378 -1.4 -1.6 putative 2-ketogluconokinase compare
PP_1111 -1.4 -4.6 putative Synthetase compare
PP_1231 -1.4 -4.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1800 -1.4 -6.4 Oxidoreductase Rmd compare
PP_4131 -1.4 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_4008 -1.4 -4.6 ATP-dependent serine protease compare
PP_3551 -1.4 -1.3 DNA-binding response regulator, LuxR family compare
PP_0434 -1.4 -6.0 Anhydro-N-acetylmuramic acid kinase compare
PP_1812 -1.4 -2.0 conserved protein of unknown function compare
PP_5094 -1.4 -3.1 putative enzyme with PLP binding domain compare
PP_1804 -1.4 -6.6 Glycosyl transferase WbpL compare
PP_0841 -1.3 -1.6 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1493 -1.3 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3766 -1.3 -1.4 Lactoylglutathione lyase compare
PP_1303 -1.3 -2.9 Sulfate adenylyltransferase subunit 2 compare
PP_5294 -1.3 -3.7 Ribonuclease PH compare
PP_4121 -1.3 -1.6 NADH-quinone oxidoreductase subunit C/D compare
PP_1764 -1.3 -5.2 Phosphoglycolate phosphatase 2 compare
PP_4693 -1.3 -3.0 RNA polymerase-binding transcription factor DksA compare
PP_0878 -1.3 -3.2 dipeptide ABC transporter, binding subunit compare
PP_0393 -1.3 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3190 -1.3 -2.3 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5028 -1.3 -1.2 proline iminopeptidase compare
PP_5347 -1.3 -4.5 pyruvate carboxylase subunit A compare
PP_1513 -1.3 -2.6 Ribosomal RNA small subunit methyltransferase J compare
PP_1262 -1.3 -5.2 LysR family transcriptional regulator conserved
PP_4129 -1.2 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1439 -1.2 -1.8 conserved exported protein of unknown function compare
PP_1353 -1.2 -0.8 conserved membrane protein of unknown function compare
PP_1780 -1.2 -8.1 putative mannosyltransferase compare
PP_0001 -1.2 -0.9 probable chromosome-partitioning protein compare
PP_5480 -1.2 -3.4 conserved exported protein of unknown function compare
PP_3530 -1.2 -2.6 putative S-ureidoglycine aminohydrolase compare
PP_1355 -1.2 -9.6 Muropeptide permease AmpG compare
PP_5230 -1.2 -1.8 Tyrosine recombinase XerC compare
PP_4997 -1.2 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1186 -1.2 -1.6 two component system DNA-binding transcriptional dual regulator compare
PP_2433 -1.2 -1.6 conserved protein of unknown function compare
PP_5352 -1.2 -6.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2748 -1.2 -2.0 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4695 -1.2 -4.8 Sensory box histidine kinase compare
PP_1778 -1.2 -2.5 Lipopolysaccharide ABC export system, permease protein compare
PP_2857 -1.2 -1.3 conserved exported protein of unknown function compare
PP_2416 -1.2 -1.8 putative Iron ABC transporter, ATP-binding protein compare
PP_2880 -1.2 -1.1 Transcriptional regulator, TetR family compare
PP_3892 -1.2 -1.1 conserved protein of unknown function compare
PP_1109 -1.2 -5.5 Transcriptional regulator, GntR family compare
PP_0759 -1.2 -4.3 conserved exported protein of unknown function compare
PP_0313 -1.1 -1.9 putative electron transfer flavoprotein beta subunit compare
PP_4529 -1.1 -1.9 conserved protein of unknown function compare
PP_1328 -1.1 -1.0 Protein MraZ compare
PP_5575 -1.1 -1.6 conserved protein of unknown function compare
PP_5617 -1.1 -2.7 conserved protein of unknown function compare
PP_4793 -1.1 -1.5 conserved protein of unknown function compare
PP_5475 -1.1 -0.7 conserved protein of unknown function compare
PP_1536 -1.1 -1.4 conserved protein of unknown function compare
PP_3821 -1.1 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1629 -1.1 -3.0 Protein RecA compare
PP_5548 -1.1 -1.6 protein of unknown function compare
PP_3902 -1.1 -2.5 conserved protein of unknown function compare
PP_1729 -1.1 -1.2 conserved protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas putida KT2440

For carbon source Sodium butyrate across organisms