Experiment set15IT062 for Pseudomonas putida KT2440

Compare to:

Nonanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0691 -6.6 -4.5 Glutamate 5-kinase compare
PP_4724 -6.4 -6.2 Carbamoyl-phosphate synthase small chain compare
PP_5015 -6.3 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2136 -5.9 -5.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3511 -5.9 -11.3 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.5 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -5.4 -16.1 Carbamoyl-phosphate synthase large chain compare
PP_4679 -5.4 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -5.3 -11.9 phosphoserine phosphatase compare
PP_4680 -5.3 -18.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4700 -5.3 -3.7 pantothenate synthetase compare
PP_1664 -5.2 -5.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_2371 -5.2 -10.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1986 -5.0 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_4678 -5.0 -15.7 Ketol-acid reductoisomerase compare
PP_1988 -5.0 -10.3 3-isopropylmalate dehydrogenase compare
PP_5128 -4.9 -7.5 Dihydroxy-acid dehydratase compare
PP_0184 -4.9 -7.5 Argininosuccinate lyase compare
PP_1985 -4.9 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_0292 -4.8 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -4.7 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5185 -4.6 -9.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -4.6 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_1088 -4.6 -14.8 Argininosuccinate synthase compare
PP_1995 -4.5 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0083 -4.4 -9.4 tryptophan synthase beta chain compare
PP_4890 -4.3 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -4.3 -10.5 Histidinol dehydrogenase compare
PP_0082 -4.3 -7.7 tryptophan synthase alpha chain compare
PP_0293 -4.2 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0965 -4.1 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4799 -4.0 -3.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2328 -4.0 -9.3 Phosphoadenosine phosphosulfate reductase compare
PP_4549 -4.0 -12.1 long-chain-fatty-acid/CoA ligase compare
PP_5155 -3.8 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2334 -3.8 -8.0 2-methylisocitrate lyase compare
PP_3999 -3.7 -11.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4999 -3.7 -2.6 dihydroorotase-like protein compare
PP_0356 -3.7 -7.3 malate synthase G compare
PP_5014 -3.7 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4699 -3.6 -6.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0422 -3.6 -7.5 Indole-3-glycerol phosphate synthase compare
PP_2337 -3.5 -2.4 aconitate isomerase compare
PP_5097 -3.5 -12.4 homoserine O-acetyltransferase compare
PP_1025 -3.5 -11.2 2-isopropylmalate synthase compare
PP_0420 -3.4 -8.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5347 -3.4 -11.4 pyruvate carboxylase subunit A compare
PP_1111 -3.4 -9.8 putative Synthetase compare
PP_2335 -3.3 -7.8 methylcitrate synthase compare
PP_1110 -3.3 -4.0 serine acetyltransferase compare
PP_5098 -3.3 -7.4 methionine biosynthesis protein MetW compare
PP_0417 -3.2 -15.8 Anthranilate synthase component 1 compare
PP_5303 -3.2 -5.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2087 -3.2 -4.2 CmpX protein compare
PP_5095 -3.1 -3.0 pyrroline-5-carboxylate reductase compare
PP_5659 -3.1 -5.2 protein of unknown function compare
PP_1109 -3.1 -12.0 Transcriptional regulator, GntR family compare
PP_2001 -3.0 -8.0 O-succinylhomoserine sulfhydrylase compare
PP_4116 -2.9 -13.6 isocitrate lyase compare
PP_1231 -2.9 -7.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5289 -2.8 -4.7 Acetylglutamate kinase compare
PP_2370 -2.8 -1.9 conserved protein of unknown function compare
PP_2388 -2.8 -3.4 Transporter, LysE family compare
PP_2327 -2.8 -8.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0393 -2.7 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1237 -2.7 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2137 -2.7 -4.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_4696 -2.6 -4.3 Nitrogen regulation protein NR(I) compare
PP_0063 -2.6 -1.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0787 -2.6 -3.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5346 -2.5 -7.5 pyruvate carboxylase subunit B compare
PP_5348 -2.5 -12.6 Transcriptional regulator, LysR family compare
PP_4122 -2.4 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0164 -2.4 -9.1 conserved protein of unknown function compare
PP_2356 -2.4 -11.0 putative Phytochrome family protein compare
PP_1912 -2.3 -4.9 Phosphate acyltransferase compare
PP_2000 -2.2 -3.3 amidophosphoribosyl transferase compare
PP_2390 -2.1 -9.5 Transcriptional regulator, LysR family compare
PP_2903 -2.1 -3.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0421 -2.1 -6.1 Anthranilate phosphoribosyltransferase compare
PP_4120 -2.1 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_2336 -2.0 -1.4 aconitate hydratase 1 compare
PP_4098 -1.9 -3.0 UvrABC system protein C compare
PP_1079 -1.9 -4.8 Ornithine carbamoyltransferase compare
PP_1353 -1.9 -2.7 conserved membrane protein of unknown function compare
PP_0365 -1.8 -7.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5309 -1.8 -1.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0364 -1.8 -6.8 pimeloyl-[acp] methyl ester esterase compare
PP_1629 -1.8 -5.5 Protein RecA compare
PP_0888 -1.7 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_3790 -1.7 -8.5 diaminopimelate epimerase compare
PP_1826 -1.7 -3.1 Hydrolase, isochorismatase family compare
PP_4984 -1.7 -6.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3590 -1.7 -8.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4121 -1.6 -4.2 NADH-quinone oxidoreductase subunit C/D compare
PP_0856 -1.6 -1.9 conserved lipoprotein of unknown function compare
PP_0362 -1.6 -7.8 Biotin synthase compare
PP_4130 -1.6 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2499 -1.6 -1.6 conserved protein of unknown function compare
PP_4964 -1.6 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_0363 -1.6 -9.6 8-amino-7-oxononanoate synthase compare
PP_1609 -1.6 -1.9 conserved protein of unknown function compare
PP_4364 -1.6 -4.3 putative Anti-sigma F factor antagonist compare
PP_4693 -1.5 -4.4 RNA polymerase-binding transcription factor DksA compare
PP_1589 -1.5 -7.7 uridylyltransferase compare
PP_2354 -1.5 -7.3 Sensory box histidine kinase/response regulator compare
PP_0001 -1.4 -1.4 probable chromosome-partitioning protein compare
PP_1764 -1.4 -6.9 Phosphoglycolate phosphatase 2 compare
PP_0366 -1.4 -6.4 dethiobiotin synthetase compare
PP_2402 -1.4 -2.6 putative Sensor histidine kinase compare
PP_4129 -1.4 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1215 -1.3 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5313 -1.3 -3.0 DNA-binding protein HU-alpha compare
PP_5352 -1.3 -7.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3248 -1.3 -2.0 Dyp-type peroxidase family protein compare
PP_0370 -1.3 -8.9 Acyl-CoA dehydrogenase family protein compare
PP_4073 -1.3 -2.6 conserved exported protein of unknown function compare
PP_0401 -1.2 -3.1 Ribosomal RNA small subunit methyltransferase A compare
PP_5198 -1.2 -2.7 conserved protein of unknown function compare
PP_5007 -1.2 -2.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_t29 -1.2 -2.0 tRNA-Ala compare
PP_2433 -1.2 -2.1 conserved protein of unknown function compare
PP_4943 -1.2 -1.3 putative Glycosyl transferase compare
PP_5227 -1.2 -5.7 diaminopimelate decarboxylase compare
PP_4942 -1.2 -1.8 conserved protein of unknown function compare
PP_0833 -1.1 -1.9 queuine tRNA-ribosyltransferase compare
PP_0291 -1.1 -1.3 conserved protein of unknown function compare
PP_1036 -1.1 -4.9 membrane-bound lytic murein transglycosylase F compare
PP_0735 -1.1 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_4874 -1.1 -0.7 50S ribosomal protein L9 compare
PP_1654 -1.1 -2.4 cysteine synthase B compare
PP_2503 -1.1 -4.0 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_4550 -1.1 -5.3 long-chain-fatty-acid/CoA ligase compare
PP_2088 -1.1 -3.2 RNA polymerase sigma factor SigX compare
PP_4829 -1.1 -2.4 putative precorrin-3B synthase compare
PP_1528 -1.1 -1.1 conserved protein of unknown function compare
PP_1303 -1.0 -5.6 Sulfate adenylyltransferase subunit 2 compare
PP_1344 -1.0 -1.1 conserved protein of unknown function compare
PP_5426 -1.0 -4.6 conserved protein of unknown function compare
PP_4480 -1.0 -5.6 arginine N-succinyltransferase, subunit alpha compare
PP_5705 -1.0 -2.5 protein of unknown function compare
PP_1022 -1.0 -2.7 glucose 6-phosphate-1-dehydrogenase compare
PP_1233 -1.0 -4.5 sulfurtransferase compare
PP_1941 -0.9 -3.8 conserved protein of unknown function compare
PP_5628 -0.9 -3.1 conserved protein of unknown function compare
PP_1304 -0.9 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1493 -0.9 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2302 -0.9 -3.1 DNA-binding, ATP-dependent protease compare
PP_1268 -0.9 -1.8 putative HtrA suppressor protein sohA compare
PP_2474 -0.9 -2.7 Glutathione S-transferase family protein compare
PP_1968 -0.9 -3.7 TetR family transcriptional regulator compare
PP_1074 -0.9 -2.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3460 -0.9 -1.8 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4880 -0.9 -5.3 exoribonuclease R compare
PP_0123 -0.9 -3.9 DNA polymerase I, 5 compare
PP_4124 -0.9 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_5621 -0.9 -2.0 protein of unknown function compare
PP_4940 -0.9 -3.3 Putative glycosyltransferase compare
PP_4981 -0.9 -1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_3902 -0.9 -2.0 conserved protein of unknown function compare
PP_4168 -0.8 -2.7 conserved protein of unknown function compare
PP_0218 -0.8 -4.7 Sensory box protein compare
PP_2307 -0.8 -3.0 conserved protein of unknown function compare
PP_1917 -0.8 -4.4 4-amino-4-deoxychorismate lyase compare
PP_1426 -0.8 -5.9 L-aspartate oxidase compare
PP_4828 -0.8 -1.0 Precorrin-8X methylmutase compare
PP_0152 -0.8 -1.5 conserved exported protein of unknown function compare
PP_3505 -0.8 -2.0 conserved protein of unknown function compare
PP_1633 -0.8 -2.0 conserved exported protein of unknown function compare
PP_3346 -0.8 -2.4 Nickel transporter ATP-binding protein compare
PP_0962 -0.8 -2.1 toluene-tolerance protein compare
PP_4830 -0.8 -4.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_1185 -0.8 -3.3 Outer membrane protein H1 compare
PP_0832 -0.8 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5236 -0.8 -4.5 conserved protein of unknown function compare
PP_1214 -0.8 -1.2 putative transcriptional regulatory protein compare
PP_0232 -0.8 -0.8 ATP-binding taurine transporter subunit compare
PP_1553 -0.8 -2.5 conserved protein of unknown function compare
PP_5035 -0.8 -3.2 Histidine utilization repressor compare
PP_2145 -0.8 -4.8 beta-N-acetylglucosaminidase compare
PP_0377 -0.8 -1.3 coenzyme PQQ synthesis protein D compare
PP_0065 -0.8 -1.8 NAD-binding component of TrK potassium transporter compare
PP_2442 -0.7 -1.6 conserved protein of unknown function, DUF480 family compare
PP_2978 -0.7 -1.9 conserved protein of unknown function compare
PP_4997 -0.7 -0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3102 -0.7 -1.9 conserved protein of unknown function compare
PP_0368 -0.7 -5.1 putative Acyl-CoA dehydrogenase compare
PP_1632 -0.7 -1.3 conserved protein of unknown function compare
PP_2972 -0.7 -1.7 conserved protein of unknown function compare
PP_5000 -0.7 -0.4 peptidase component of the ATP-dependent HslVU protease compare
PP_3903 -0.7 -1.0 conserved protein of unknown function compare
PP_2309 -0.7 -1.1 conserved protein of unknown function compare
PP_4937 -0.7 -1.9 toluene tolerance protein compare
PP_1008 -0.7 -2.5 RNA polymerase subunit sigma-24 compare
PP_0434 -0.7 -5.2 Anhydro-N-acetylmuramic acid kinase compare
PP_4922 -0.7 -5.0 Phosphomethylpyrimidine synthase compare
PP_5104 -0.7 -3.3 thiazole synthase compare
PP_3014 -0.7 -3.0 conserved exported protein of unknown function compare
PP_0439 -0.7 -1.9 conserved protein of unknown function compare
PP_4545 -0.7 -3.0 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Nonanoic acid in Pseudomonas putida KT2440

For carbon source Nonanoic acid across organisms