Experiment set15IT062 for Pseudomonas putida KT2440

Compare to:

Nonanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +2.1 13.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_1650 +2.0 18.2 Sensor protein GacS compare
PP_5145 +2.0 19.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4099 +2.0 17.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1113 +1.9 14.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0948 +1.8 8.2 Phosphocarrier protein HPr compare
PP_4171 +1.7 12.3 conserved exported protein of unknown function compare
PP_1224 +1.6 9.7 periplasmic subunit of the TolQRA transport system compare
PP_5053 +1.6 6.4 Protein-export protein SecB compare
PP_5003 +1.6 12.0 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_4804 +1.5 5.3 RlpA-like lipoprotein compare
PP_1655 +1.5 6.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0547 +1.4 5.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4817 +1.3 6.6 MaoC domain protein compare
PP_2889 +1.3 3.2 putative Transmembrane regulator PrtR compare
PP_2387 +1.2 3.7 conserved protein of unknown function compare
PP_5005 +1.1 8.5 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4227 +1.1 2.6 conserved protein of unknown function compare
PP_4217 +1.0 9.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5093 +1.0 2.2 twitching motility protein compare
PP_5106 +1.0 4.1 conserved inner membrane protein compare
PP_5580 +1.0 1.4 protein of unknown function compare
PP_4271 +1.0 1.0 conserved protein of unknown function compare
PP_5006 +1.0 6.8 Transcriptional regulator, TetR family compare
PP_5146 +1.0 5.3 RNA pyrophosphohydrolase compare
PP_0138 +0.9 6.4 conserved membrane protein of unknown function compare
PP_2060 +0.9 2.4 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4994 +0.9 4.6 conserved protein of unknown function compare
PP_1683 +0.9 3.4 Transcriptional regulator, MarR family compare
PP_1898 +0.9 3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_5090 +0.9 1.7 putative cell division protein compare
PP_0240 +0.8 3.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1733 +0.8 2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_0893 +0.8 2.8 ThiJ/PfpI family protein compare
PP_3411 +0.8 1.0 conserved protein of unknown function compare
PP_4519 +0.8 6.8 Agglutination protein compare
PP_0168 +0.8 7.3 putative surface adhesion protein compare
PP_2322 +0.8 6.1 Major outer membrane lipoprotein compare
PP_1004 +0.8 2.6 conserved protein of unknown function compare
PP_2580 +0.7 3.2 conserved protein of unknown function compare
PP_5546 +0.7 1.6 conserved protein of unknown function compare
PP_5648 +0.7 2.9 conserved exported protein of unknown function compare
PP_4785 +0.7 4.4 conserved exported protein of unknown function compare
PP_0276 +0.7 1.3 Transcriptional regulator, Cro/CI family compare
PP_3198 +0.7 2.0 Ferredoxin, 2Fe-2S compare
PP_3888 +0.7 2.0 conserved protein of unknown function compare
PP_4208 +0.7 5.0 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2144 +0.7 2.4 Transcriptional regulator, TetR family compare
PP_1999 +0.7 1.7 membrane protein required for colicin V production compare
PP_1742 +0.7 1.8 conserved inner membrane protein of unknown function compare
PP_1656 +0.7 3.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_0166 +0.7 6.0 HlyD family secretion protein compare
PP_2437 +0.7 5.2 putative Acyl-CoA dehydrogenase compare
PP_1410 +0.7 1.2 conserved protein of unknown function compare
PP_4561 +0.7 1.0 stress response protein compare
PP_4004 +0.7 2.1 DNA translocase FtsK compare
PP_3509 +0.7 2.5 Glyoxalase family protein compare
PP_3365 +0.6 1.3 Acetolactate synthase compare
PP_4342 +0.6 1.4 flagellar synthesis regulator, putative ATPase compare
PP_0165 +0.6 5.6 GGDEF domain protein compare
PP_2773 +0.6 1.4 conserved protein of unknown function compare
PP_3924 +0.6 1.4 conserved protein of unknown function compare
PP_0122 +0.6 2.2 conserved exported protein of unknown function compare
PP_5597 +0.6 2.7 conserved protein of unknown function compare
PP_0508 +0.6 1.3 conserved exported protein of unknown function compare
PP_0167 +0.6 5.8 Toxin secretion ATP-binding protein compare
PP_0153 +0.6 1.6 hypothetical protein compare
PP_2105 +0.6 2.1 conserved protein of unknown function compare
PP_2152 +0.6 1.2 glycerophosphoryl diester phosphodiesterase compare
PP_3034 +0.6 2.0 putative Regulator protein compare
PP_3672 +0.6 2.0 conserved protein of unknown function compare
PP_5430 +0.6 2.5 protein of unknown function compare
PP_1864 +0.6 2.1 conserved protein of unknown function compare
PP_1122 +0.6 1.5 OmpA family protein compare
PP_0025 +0.6 1.1 hypothetical protein compare
PP_3693 +0.6 1.5 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0306 +0.6 1.8 conserved protein of unknown function compare
PP_4504 +0.6 0.6 conserved exported protein of unknown function compare
PP_1096 +0.6 1.5 putative electron transport complex protein compare
PP_5552 +0.6 1.7 conserved protein of unknown function compare
PP_4462 +0.5 3.6 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PP_2581 +0.5 1.1 conserved protein of unknown function compare
PP_3926 +0.5 1.1 short-chain dehydrogenase compare
PP_3651 +0.5 4.3 Sensor histidine kinase/response regulator compare
PP_3831 +0.5 3.0 conserved protein of unknown function compare
PP_5140 +0.5 1.9 Transcriptional regulator, MerR family compare
PP_4707 +0.5 1.8 OsmY-related protein compare
PP_4373 +0.5 3.9 Transcriptional regulator FleQ compare
PP_0749 +0.5 2.3 conserved exported protein of unknown function compare
PP_5561 +0.5 1.8 conserved protein of unknown function compare
PP_0905 +0.5 1.6 conserved exported protein of unknown function compare
PP_3935 +0.5 2.4 conserved protein of unknown function compare
PP_0254 +0.5 2.2 conserved protein of unknown function compare
PP_0979 +0.5 2.4 DNA polymerase III subunit chi compare
PP_4835 +0.5 0.7 conserved exported protein of unknown function compare
PP_2009 +0.5 2.3 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_4173 +0.5 2.7 Sensor histidine kinase/response regulator compare
PP_5184 +0.5 2.7 glutamylpolyamine synthetase compare
PP_4406 +0.5 0.7 conserved protein of unknown function compare
PP_2403 +0.5 1.3 Chemotaxis protein CheY compare
PP_1575 +0.5 0.7 conserved protein of unknown function compare
PP_1293 +0.5 1.1 molybdopterin synthase small subunit compare
PP_5254 +0.5 2.9 conserved protein of unknown function compare
PP_0674 +0.5 4.0 ADP/ATP ratio sensor and inhibitor of translation compare
PP_3726 +0.5 0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_2320 +0.5 4.3 conserved exported protein of unknown function compare
PP_2323 +0.5 4.1 conserved protein of unknown function compare
PP_5556 +0.5 2.0 putative bacteriophage lysis protein compare
PP_2619 +0.5 1.7 FHA domain protein compare
PP_0163 +0.5 3.6 putative transcriptional regulator compare
PP_2575 +0.5 1.4 conserved exported protein of unknown function compare
PP_1522 +0.5 2.7 major cold shock protein compare
PP_2793 +0.5 1.1 Acyl-CoA dehydrogenase family protein compare
PP_3757 +0.5 1.3 Chemotaxis protein CheY compare
PP_2147 +0.5 1.9 conserved exported protein of unknown function compare
PP_0355 +0.5 1.9 Response regulator compare
PP_4499 +0.5 1.8 putative maturation enzyme compare
PP_0801 +0.5 0.8 conserved exported protein of unknown function compare
PP_1697 +0.5 0.9 transcriptional regulator, GntR family compare
PP_4916 +0.5 1.5 putative esterase compare
PP_1017 +0.5 2.8 mannose/glucose ABC transporter, permease protein compare
PP_5582 +0.5 0.9 conserved protein of unknown function compare
PP_2342 +0.5 1.9 conserved protein of unknown function compare
PP_5353 +0.5 1.9 conserved exported protein of unknown function compare
PP_4517 +0.5 1.1 conserved protein of unknown function compare
PP_0775 +0.5 0.8 conserved protein of unknown function compare
PP_3205 +0.5 1.4 Fumarylacetoacetate hydrolase family protein compare
PP_5496 +0.5 1.7 conserved exported protein of unknown function compare
PP_5429 +0.5 2.2 protein of unknown function compare
PP_2652 +0.5 2.2 putative Hydratase/decarboxylase compare
PP_2836 +0.5 1.4 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_2622 +0.5 1.2 conserved protein of unknown function compare
PP_4172 +0.5 2.5 conserved exported protein of unknown function compare
PP_5232 +0.5 0.9 conserved protein of unknown function compare
PP_4513 +0.5 1.4 conserved protein of unknown function compare
PP_2404 +0.5 1.9 conserved exported protein of unknown function compare
PP_5456 +0.4 1.1 conserved protein of unknown function compare
PP_0182 +0.4 1.7 conserved protein of unknown function compare
PP_4532 +0.4 1.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5017 +0.4 0.7 Sec-independent protein translocase protein TatB compare
PP_1255 +0.4 2.0 putative cis-4-hydroxy-D-proline oxidase compare
PP_0886 +0.4 2.2 conserved exported protein of unknown function compare
PP_2712 +0.4 1.4 conserved exported protein of unknown function compare
PP_0385 +0.4 1.7 putative serine acetyltransferase compare
PP_0697 +0.4 2.7 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_5329 +0.4 2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1070 +0.4 1.8 glutamate / aspartate ABC transporter - permease subunit compare
PP_3816 +0.4 2.6 Polyamine ABC transporter, permease protein compare
PP_0228 +0.4 2.3 putative serine acetyltransferase compare
PP_1317 +0.4 1.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2835 +0.4 1.0 putative oxidoreductase compare
PP_5393 +0.4 0.9 putative metal-binding chaperone compare
PP_5714 +0.4 1.4 conserved protein of unknown function compare
PP_1635 +0.4 1.3 DNA-binding response regulator compare
PP_3145 +0.4 2.0 conserved protein of unknown function compare
PP_5499 +0.4 1.5 conserved protein of unknown function compare
PP_5039 +0.4 0.9 conserved protein of unknown function compare
PP_4786 +0.4 2.2 conserved protein of unknown function compare
PP_2573 +0.4 2.2 conserved protein of unknown function compare
PP_0694 +0.4 1.6 conserved protein of unknown function compare
PP_0951 +0.4 2.6 Ribosome hibernation promoting factor compare
PP_t13 +0.4 1.2 tRNA-Lys compare
PP_3367 +0.4 2.0 conserved protein of unknown function compare
PP_t49 +0.4 1.9 tRNA-Met compare
PP_2318 +0.4 2.0 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_3402 +0.4 2.5 conserved protein of unknown function compare
PP_0536 +0.4 1.6 conserved protein of unknown function compare
PP_5644 +0.4 1.1 conserved membrane protein of unknown function compare
PP_1586 +0.4 2.0 putative Killer protein compare
PP_3409 +0.4 1.4 putative Cobalamin biosynthesis protein cobE compare
PP_2319 +0.4 2.2 conserved protein of unknown function compare
PP_4224 +0.4 1.6 Sensor histidine kinase compare
PP_2740 +0.4 1.0 Transcriptional regulator, MerR family compare
PP_0703 +0.4 1.0 putative Transmembrane sensor compare
PP_1669 +0.4 2.4 NLP/P60 family protein compare
PP_4054 +0.4 1.3 conserved protein of unknown function compare
PP_2791 +0.4 1.6 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_3424 +0.4 1.7 Type II secretion pathway protein XcpS compare
PP_4212 +0.4 1.7 pyoverdine biosynthesis related protein compare
PP_4215 +0.4 1.8 pyoverdine biosynthesis related protein compare
PP_2696 +0.4 2.4 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_2681 +0.4 1.1 coenzyme PQQ synthesis protein D compare
PP_3295 +0.4 1.2 YeeE/YedE family protein compare
PP_4816 +0.4 2.4 conserved protein of unknown function compare
PP_1779 +0.4 1.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4265 +0.4 1.3 DNA-binding transcriptional dual regulator compare
PP_1390 +0.4 0.9 conserved exported protein of unknown function compare
PP_5494 +0.4 2.2 protein of unknown function compare
PP_0770 +0.4 1.8 PemI-like protein compare
PP_5256 +0.4 1.4 Cyclic nucleotide-binding protein compare
PP_3637 +0.4 0.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1702 +0.4 1.3 Recombination-associated protein RdgC compare
PP_2772 +0.4 1.9 putative Monooxygenase compare
PP_3908 +0.4 1.8 conserved protein of unknown function compare
PP_0711 +0.4 1.6 putative hydrolase compare
PP_5519 +0.4 1.3 conserved protein of unknown function of phage origin compare
PP_3526 +0.4 2.3 Transcriptional regulator, AraC family compare
PP_1761 +0.4 2.7 diguanylate cyclase with phosphodiesterase domain compare
PP_1803 +0.4 2.9 UDP-sugar epimerase compare
PP_2742 +0.4 1.3 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Nonanoic acid in Pseudomonas putida KT2440

For carbon source Nonanoic acid across organisms