Experiment set15IT061 for Pseudomonas putida KT2440

Compare to:

Octanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_5659 -7.9 -5.5 protein of unknown function compare
PP_0966 -6.8 -9.4 Histidinol dehydrogenase compare
PP_0293 -6.5 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2136 -6.1 -4.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1986 -6.0 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0422 -6.0 -7.6 Indole-3-glycerol phosphate synthase compare
PP_4723 -5.9 -13.3 Carbamoyl-phosphate synthase large chain compare
PP_4116 -5.6 -14.6 isocitrate lyase compare
PP_4909 -5.6 -10.1 phosphoserine phosphatase compare
PP_4679 -5.6 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -5.6 -3.9 tryptophan synthase alpha chain compare
PP_0290 -5.6 -8.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -5.5 -17.2 Ketol-acid reductoisomerase compare
PP_0691 -5.5 -6.2 Glutamate 5-kinase compare
PP_1985 -5.4 -6.9 3-isopropylmalate dehydratase large subunit compare
PP_4700 -5.2 -3.6 pantothenate synthetase compare
PP_1088 -5.2 -13.8 Argininosuccinate synthase compare
PP_1988 -5.1 -9.6 3-isopropylmalate dehydrogenase compare
PP_4890 -5.1 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -5.0 -6.7 Acetylglutamate kinase compare
PP_4724 -4.9 -7.6 Carbamoyl-phosphate synthase small chain compare
PP_4680 -4.9 -14.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -4.9 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -4.8 -10.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -4.7 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -4.6 -7.7 tryptophan synthase beta chain compare
PP_1079 -4.5 -6.8 Ornithine carbamoyltransferase compare
PP_0356 -4.5 -9.5 malate synthase G compare
PP_1237 -4.5 -3.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1231 -4.5 -7.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0965 -4.4 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5085 -4.4 -8.4 malic enzyme B compare
PP_4799 -4.2 -2.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4549 -4.2 -13.1 long-chain-fatty-acid/CoA ligase compare
PP_5128 -4.1 -7.0 Dihydroxy-acid dehydratase compare
PP_2370 -4.1 -3.6 conserved protein of unknown function compare
PP_0420 -4.1 -9.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5095 -4.0 -2.5 pyrroline-5-carboxylate reductase compare
PP_2137 -3.9 -4.4 beta-ketoadipyl CoA thiolase, beta component compare
PP_5185 -3.9 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0417 -3.9 -14.8 Anthranilate synthase component 1 compare
PP_0421 -3.9 -7.5 Anthranilate phosphoribosyltransferase compare
PP_4701 -3.9 -1.8 glucose-6-phosphate isomerase compare
PP_3511 -3.8 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_1111 -3.8 -10.0 putative Synthetase compare
PP_2371 -3.8 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -3.7 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5571 -3.7 -2.0 conserved protein of unknown function compare
PP_5097 -3.5 -10.7 homoserine O-acetyltransferase compare
PP_3999 -3.5 -10.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1025 -3.4 -10.7 2-isopropylmalate synthase compare
PP_1109 -3.4 -10.0 Transcriptional regulator, GntR family compare
PP_5014 -3.3 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_1664 -3.3 -5.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5015 -3.3 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4699 -3.2 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0184 -3.2 -6.0 Argininosuccinate lyase compare
PP_1912 -3.2 -5.8 Phosphate acyltransferase compare
PP_0852 -3.1 -2.2 Transcriptional regulator, Cro/CI family compare
PP_0787 -3.1 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2327 -3.1 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1110 -3.1 -4.8 serine acetyltransferase compare
PP_2001 -2.9 -7.3 O-succinylhomoserine sulfhydrylase compare
PP_2328 -2.9 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -2.8 -3.8 Nitrogen regulation protein NR(I) compare
PP_1328 -2.7 -2.8 Protein MraZ compare
PP_3248 -2.6 -1.8 Dyp-type peroxidase family protein compare
PP_0370 -2.6 -11.6 Acyl-CoA dehydrogenase family protein compare
PP_5098 -2.6 -6.5 methionine biosynthesis protein MetW compare
PP_1629 -2.4 -5.8 Protein RecA compare
PP_0292 -2.3 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2388 -2.3 -3.1 Transporter, LysE family compare
PP_5303 -2.3 -4.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4129 -2.1 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5028 -2.0 -3.6 proline iminopeptidase compare
PP_1589 -2.0 -7.7 uridylyltransferase compare
PP_1215 -2.0 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_5007 -1.9 -2.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4121 -1.9 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_2356 -1.9 -6.3 putative Phytochrome family protein compare
PP_4124 -1.8 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_4098 -1.8 -2.2 UvrABC system protein C compare
PP_2402 -1.8 -2.8 putative Sensor histidine kinase compare
PP_5309 -1.8 -1.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0291 -1.7 -1.9 conserved protein of unknown function compare
PP_2378 -1.7 -2.4 Fe/S biogenesis protein NfuA compare
PP_2000 -1.7 -3.1 amidophosphoribosyl transferase compare
PP_4130 -1.7 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0735 -1.6 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4268 -1.6 -1.4 nucleoid-associated broad specificity regulator compare
PP_1216 -1.6 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4122 -1.6 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4254 -1.5 -2.1 conserved protein of unknown function compare
PP_2390 -1.5 -5.8 Transcriptional regulator, LysR family compare
PP_4126 -1.5 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_3102 -1.5 -3.7 conserved protein of unknown function compare
PP_2631 -1.5 -2.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5313 -1.5 -1.6 DNA-binding protein HU-alpha compare
PP_1353 -1.5 -2.1 conserved membrane protein of unknown function compare
PP_0164 -1.4 -5.1 conserved protein of unknown function compare
PP_0063 -1.4 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2029 -1.4 -1.6 von Willebrand factor type A domain protein compare
PP_2087 -1.4 -2.6 CmpX protein compare
PP_5216 -1.4 -1.7 exopolyphosphatase compare
PP_5035 -1.4 -4.7 Histidine utilization repressor compare
PP_3590 -1.4 -4.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1128 -1.3 -3.7 OmpA family protein compare
PP_0959 -1.3 -2.1 phospholipid ABC transporter compare
PP_5528 -1.3 -1.8 conserved protein of unknown function compare
PP_0856 -1.3 -2.0 conserved lipoprotein of unknown function compare
PP_2433 -1.3 -2.2 conserved protein of unknown function compare
PP_2354 -1.3 -5.2 Sensory box histidine kinase/response regulator compare
PP_0393 -1.3 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4120 -1.3 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_2336 -1.2 -3.0 aconitate hydratase 1 compare
PP_4693 -1.2 -3.7 RNA polymerase-binding transcription factor DksA compare
PP_4989 -1.2 -2.5 Protein PilJ compare
PP_1764 -1.2 -6.3 Phosphoglycolate phosphatase 2 compare
PP_1366 -1.2 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_4997 -1.2 -1.7 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3916 -1.2 -1.7 conserved protein of unknown function compare
PP_3449 -1.2 -2.3 conserved exported protein of unknown function compare
PP_2718 -1.2 -1.6 arsenic resistance transcriptional regulator compare
PP_5348 -1.2 -5.9 Transcriptional regulator, LysR family compare
PP_0888 -1.2 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_4471 -1.2 -3.0 Magnesium transporter compare
PP_3790 -1.2 -4.9 diaminopimelate epimerase compare
PP_3766 -1.2 -3.7 Lactoylglutathione lyase compare
PP_4550 -1.1 -4.3 long-chain-fatty-acid/CoA ligase compare
PP_4532 -1.1 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4131 -1.1 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_1677 -1.1 -2.6 Adenosyl-cobyric acid synthase compare
PP_0152 -1.1 -1.7 conserved exported protein of unknown function compare
PP_1233 -1.1 -3.0 sulfurtransferase compare
PP_5347 -1.1 -6.0 pyruvate carboxylase subunit A compare
PP_5346 -1.1 -4.4 pyruvate carboxylase subunit B compare
PP_2031 -1.1 -0.9 conserved protein of unknown function compare
PP_4782 -1.1 -2.8 Phosphomethylpyrimidine kinase compare
PP_1917 -1.1 -2.9 4-amino-4-deoxychorismate lyase compare
PP_1713 -1.1 -2.1 Transcriptional regulator PcaQ compare
PP_4364 -1.1 -2.5 putative Anti-sigma F factor antagonist compare
PP_2028 -1.1 -3.1 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0401 -1.1 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4824 -1.1 -3.6 Sensor histidine kinase/response regulator compare
PP_4546 -1.1 -2.7 ATP-dependent helicase HrpA compare
PP_3505 -1.1 -1.3 conserved protein of unknown function compare
PP_4874 -1.1 -0.6 50S ribosomal protein L9 compare
PP_3378 -1.0 -1.2 putative 2-ketogluconokinase compare
PP_0905 -1.0 -1.4 conserved exported protein of unknown function compare
PP_4156 -1.0 -1.6 Transcriptional regulator, LysR family compare
PP_1836 -1.0 -2.4 putative metal transporter, ZIP family compare
PP_1968 -1.0 -3.3 TetR family transcriptional regulator compare
PP_2214 -1.0 -2.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4999 -1.0 -1.1 dihydroorotase-like protein compare
PP_4964 -1.0 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_3481 -1.0 -1.8 conserved exported protein of unknown function compare
PP_4247 -1.0 -1.5 Exonuclease compare
PP_1303 -1.0 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_1022 -1.0 -2.2 glucose 6-phosphate-1-dehydrogenase compare
PP_1493 -1.0 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2414 -1.0 -2.7 conserved exported protein of unknown function compare
PP_0365 -1.0 -4.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1381 -1.0 -0.8 4-carboxymuconolactone decarboxylase compare
PP_4726 -1.0 -2.0 Chaperone protein DnaJ compare
PP_2088 -1.0 -2.2 RNA polymerase sigma factor SigX compare
PP_2903 -1.0 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4993 -1.0 -2.1 Glutathione synthetase compare
PP_3539 -0.9 -1.4 putative Transcriptional regulator compare
PP_5352 -0.9 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2999 -0.9 -1.1 Glyoxalase family protein compare
PP_5227 -0.9 -3.9 diaminopimelate decarboxylase compare
PP_0218 -0.9 -4.9 Sensory box protein compare
PP_5236 -0.9 -3.9 conserved protein of unknown function compare
PP_4451 -0.9 -2.9 conserved protein of unknown function compare
PP_5052 -0.9 -1.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_3861 -0.9 -2.2 Phage FluMu protein gp46 compare
PP_2978 -0.9 -2.2 conserved protein of unknown function compare
PP_2462 -0.9 -2.5 conserved protein of unknown function compare
PP_5441 -0.9 -1.9 protein of unknown function compare
PP_2145 -0.9 -3.1 beta-N-acetylglucosaminidase compare
PP_5104 -0.9 -3.3 thiazole synthase compare
PP_2475 -0.9 -2.5 Transcriptional regulator, TetR family compare
PP_3919 -0.9 -2.2 conserved protein of unknown function compare
PP_2408 -0.9 -2.6 cobalt-zinc-cadmium resistance protein compare
PP_t11 -0.9 -0.9 tRNA-Lys compare
PP_t12 -0.9 -0.8 tRNA-Thr compare
PP_2575 -0.9 -1.5 conserved exported protein of unknown function compare
PP_1268 -0.9 -2.1 putative HtrA suppressor protein sohA compare
PP_0123 -0.8 -3.6 DNA polymerase I, 5 compare
PP_4984 -0.8 -4.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3926 -0.8 -1.0 short-chain dehydrogenase compare
PP_3679 -0.8 -4.4 conserved protein of unknown function compare
PP_4069 -0.8 -3.0 conserved protein of unknown function compare
PP_5453 -0.8 -1.4 conserved protein of unknown function compare
PP_3810 -0.8 -1.4 conserved protein of unknown function compare
PP_2896 -0.8 -3.2 conserved protein of unknown function compare
PP_3819 -0.8 -2.9 glutathione reductase (NADPH) compare
PP_5575 -0.8 -1.5 conserved protein of unknown function compare
PP_1041 -0.8 -1.5 twin arginine protein export complex subunit compare
PP_2640 -0.8 -1.5 Acetyltransferase, GNAT family compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Octanoic acid in Pseudomonas putida KT2440

For carbon source Octanoic acid across organisms