Experiment set15IT059 for Pseudomonas putida KT2440

Compare to:

Lauric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -6.4 -6.2 Carbamoyl-phosphate synthase small chain compare
PP_1988 -6.2 -11.1 3-isopropylmalate dehydrogenase compare
PP_0290 -6.0 -7.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -6.0 -13.5 Carbamoyl-phosphate synthase large chain compare
PP_1985 -5.8 -6.9 3-isopropylmalate dehydratase large subunit compare
PP_3511 -5.6 -12.0 Branched-chain-amino-acid aminotransferase compare
PP_5155 -5.5 -8.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4116 -5.5 -15.8 isocitrate lyase compare
PP_4680 -5.4 -18.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.4 -14.8 Histidinol dehydrogenase compare
PP_2137 -5.4 -4.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_4890 -5.3 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4909 -5.3 -11.3 phosphoserine phosphatase compare
PP_0292 -5.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -5.3 -11.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0356 -5.2 -12.6 malate synthase G compare
PP_0083 -5.1 -7.0 tryptophan synthase beta chain compare
PP_5659 -5.0 -6.4 protein of unknown function compare
PP_1995 -5.0 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -4.9 -7.0 Indole-3-glycerol phosphate synthase compare
PP_2136 -4.8 -7.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4678 -4.8 -17.4 Ketol-acid reductoisomerase compare
PP_4700 -4.7 -5.5 pantothenate synthetase compare
PP_5128 -4.7 -8.5 Dihydroxy-acid dehydratase compare
PP_0965 -4.6 -12.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0082 -4.6 -6.3 tryptophan synthase alpha chain compare
PP_0184 -4.5 -7.5 Argininosuccinate lyase compare
PP_5185 -4.5 -11.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2371 -4.4 -11.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1088 -4.4 -15.4 Argininosuccinate synthase compare
PP_1111 -4.4 -12.0 putative Synthetase compare
PP_4679 -4.4 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1109 -4.4 -14.9 Transcriptional regulator, GntR family compare
PP_5015 -4.3 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0289 -4.3 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4549 -4.2 -14.1 long-chain-fatty-acid/CoA ligase compare
PP_0368 -4.2 -13.1 putative Acyl-CoA dehydrogenase compare
PP_5014 -4.2 -4.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0293 -4.0 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5007 -4.0 -4.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1110 -3.9 -6.5 serine acetyltransferase compare
PP_1025 -3.9 -13.7 2-isopropylmalate synthase compare
PP_0691 -3.9 -5.5 Glutamate 5-kinase compare
PP_0417 -3.8 -18.5 Anthranilate synthase component 1 compare
PP_4999 -3.7 -2.6 dihydroorotase-like protein compare
PP_5097 -3.6 -16.7 homoserine O-acetyltransferase compare
PP_2370 -3.6 -3.2 conserved protein of unknown function compare
PP_3999 -3.5 -11.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -3.5 -7.8 Anthranilate phosphoribosyltransferase compare
PP_1079 -3.4 -6.2 Ornithine carbamoyltransferase compare
PP_1986 -3.4 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_5098 -3.4 -10.8 methionine biosynthesis protein MetW compare
PP_4699 -3.4 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5303 -3.4 -9.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2001 -3.3 -11.3 O-succinylhomoserine sulfhydrylase compare
PP_5289 -3.2 -4.6 Acetylglutamate kinase compare
PP_5095 -3.1 -3.0 pyrroline-5-carboxylate reductase compare
PP_0420 -3.1 -9.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5085 -3.0 -9.6 malic enzyme B compare
PP_1231 -3.0 -10.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2328 -2.9 -6.8 Phosphoadenosine phosphosulfate reductase compare
PP_4098 -2.9 -3.3 UvrABC system protein C compare
PP_2327 -2.8 -9.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0393 -2.8 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5347 -2.6 -13.1 pyruvate carboxylase subunit A compare
PP_1912 -2.4 -6.0 Phosphate acyltransferase compare
PP_4129 -2.4 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5346 -2.3 -12.8 pyruvate carboxylase subunit B compare
PP_4342 -2.3 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_4696 -2.2 -4.7 Nitrogen regulation protein NR(I) compare
PP_2388 -2.2 -6.0 Transporter, LysE family compare
PP_1664 -2.2 -4.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4122 -2.2 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1215 -2.1 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_2000 -2.1 -3.3 amidophosphoribosyl transferase compare
PP_1353 -2.1 -2.4 conserved membrane protein of unknown function compare
PP_0787 -2.0 -5.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4693 -2.0 -6.1 RNA polymerase-binding transcription factor DksA compare
PP_4120 -2.0 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_2356 -1.9 -9.7 putative Phytochrome family protein compare
PP_2336 -1.9 -1.8 aconitate hydratase 1 compare
PP_5309 -1.9 -1.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0735 -1.9 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_0852 -1.8 -2.7 Transcriptional regulator, Cro/CI family compare
PP_3790 -1.8 -8.9 diaminopimelate epimerase compare
PP_4964 -1.8 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_1734 -1.8 -3.8 Probable septum site-determining protein MinC compare
PP_5348 -1.7 -9.2 Transcriptional regulator, LysR family compare
PP_5028 -1.7 -3.9 proline iminopeptidase compare
PP_0435 -1.7 -13.0 Peptidase, M23/M37 family compare
PP_0261 -1.7 -6.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1237 -1.7 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1233 -1.7 -4.9 sulfurtransferase compare
PP_0856 -1.7 -1.9 conserved lipoprotein of unknown function compare
PP_1589 -1.7 -8.2 uridylyltransferase compare
PP_0291 -1.6 -1.7 conserved protein of unknown function compare
PP_0063 -1.6 -2.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4799 -1.6 -4.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2390 -1.5 -6.4 Transcriptional regulator, LysR family compare
PP_2087 -1.5 -3.8 CmpX protein compare
PP_4804 -1.4 -3.2 RlpA-like lipoprotein compare
PP_1826 -1.4 -2.4 Hydrolase, isochorismatase family compare
PP_1654 -1.3 -3.5 cysteine synthase B compare
PP_2299 -1.3 -3.6 Trigger factor compare
PP_4782 -1.3 -4.9 Phosphomethylpyrimidine kinase compare
PP_2354 -1.3 -7.7 Sensory box histidine kinase/response regulator compare
PP_3248 -1.3 -2.2 Dyp-type peroxidase family protein compare
PP_1112 -1.3 -6.7 conserved membrane protein of unknown function compare
PP_3946 -1.3 -1.5 HTH-type transcriptional repressor NicR compare
PP_5104 -1.2 -6.8 thiazole synthase compare
PP_0164 -1.2 -6.7 conserved protein of unknown function compare
PP_5352 -1.2 -7.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5453 -1.2 -1.5 conserved protein of unknown function compare
PP_0370 -1.2 -9.4 Acyl-CoA dehydrogenase family protein compare
PP_5571 -1.2 -1.8 conserved protein of unknown function compare
PP_2307 -1.1 -2.5 conserved protein of unknown function compare
PP_1629 -1.1 -4.1 Protein RecA compare
PP_1609 -1.1 -2.4 conserved protein of unknown function compare
PP_0855 -1.1 -1.9 conserved protein of unknown function compare
PP_4199 -1.1 -1.3 putative Lipoprotein compare
PP_3539 -1.1 -3.2 putative Transcriptional regulator compare
PP_3312 -1.1 -2.1 putative Heat shock protein compare
PP_3102 -1.1 -4.0 conserved protein of unknown function compare
PP_3241 -1.1 -1.4 conserved exported protein of unknown function compare
PP_4738 -1.0 -3.7 conserved exported protein of unknown function compare
PP_4130 -1.0 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1366 -1.0 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_5706 -1.0 -1.6 Sec translocation complex - SecG subunit compare
PP_1764 -1.0 -5.8 Phosphoglycolate phosphatase 2 compare
PP_4546 -1.0 -2.5 ATP-dependent helicase HrpA compare
PP_0362 -0.9 -7.3 Biotin synthase compare
PP_4575 -0.9 -4.3 Urea amidolyase-related protein compare
PP_2429 -0.9 -2.1 putative Membrane protein compare
PP_0086 -0.9 -2.7 conserved protein of unknown function compare
PP_2337 -0.9 -1.9 aconitate isomerase compare
PP_4940 -0.9 -4.4 Putative glycosyltransferase compare
PP_4126 -0.9 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_5279 -0.9 -2.3 conserved protein of unknown function compare
PP_1217 -0.9 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5035 -0.9 -4.4 Histidine utilization repressor compare
PP_2302 -0.9 -3.3 DNA-binding, ATP-dependent protease compare
PP_3926 -0.9 -1.5 short-chain dehydrogenase compare
PP_3766 -0.9 -3.0 Lactoylglutathione lyase compare
PP_0364 -0.9 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_0248 -0.9 -6.5 Probable alpha-L-glutamate ligase compare
PP_1022 -0.9 -2.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5528 -0.9 -1.7 conserved protein of unknown function compare
PP_4121 -0.9 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_3447 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_5640 -0.8 -1.6 conserved protein of unknown function compare
PP_0366 -0.8 -5.1 dethiobiotin synthetase compare
PP_1214 -0.8 -1.7 putative transcriptional regulatory protein compare
PP_1468 -0.8 -2.1 Tyrosine recombinase XerD compare
PP_3821 -0.8 -4.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4917 -0.8 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4922 -0.8 -5.7 Phosphomethylpyrimidine synthase compare
PP_1968 -0.8 -3.5 TetR family transcriptional regulator compare
PP_5000 -0.8 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_1702 -0.8 -2.7 Recombination-associated protein RdgC compare
PP_5236 -0.8 -5.0 conserved protein of unknown function compare
PP_0958 -0.8 -3.1 phospholipid ABC transporter ATP-binding subunit compare
PP_2433 -0.8 -1.6 conserved protein of unknown function compare
PP_5717 -0.8 -1.3 conserved protein of unknown function compare
PP_0794 -0.8 -2.5 1-phosphofructokinase monomer compare
PP_4681 -0.8 -2.2 conserved protein of unknown function compare
PP_0123 -0.8 -3.5 DNA polymerase I, 5 compare
PP_4989 -0.8 -2.3 Protein PilJ compare
PP_0401 -0.8 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_5701 -0.7 -1.4 conserved protein of unknown function compare
PP_5114 -0.7 -1.3 putative adenine methyltransferase compare
PP_4997 -0.7 -0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4364 -0.7 -2.9 putative Anti-sigma F factor antagonist compare
PP_1304 -0.7 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3590 -0.7 -4.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3541 -0.7 -1.5 Transporter, MgtC family compare
PP_1328 -0.7 -1.3 Protein MraZ compare
PP_0022 -0.7 -0.8 hypothetical protein compare
PP_2615 -0.7 -1.6 hemolysin-coregulated protein compare
PP_0440 -0.7 -2.3 Elongation factor Tu-A compare
PP_4131 -0.7 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_0048 -0.7 -0.9 conserved protein of unknown function compare
PP_5048 -0.7 -3.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1303 -0.7 -4.4 Sulfate adenylyltransferase subunit 2 compare
PP_0150 -0.7 -2.2 conserved exported protein of unknown function compare
PP_4124 -0.7 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_1493 -0.7 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4671 -0.7 -2.9 conserved exported protein of unknown function compare
PP_0218 -0.7 -5.2 Sensory box protein compare
PP_3789 -0.7 -3.8 putative Efflux transporter compare
PP_4008 -0.7 -4.0 ATP-dependent serine protease compare
PP_4880 -0.7 -3.9 exoribonuclease R compare
PP_5705 -0.6 -1.5 protein of unknown function compare
PP_4271 -0.6 -0.5 conserved protein of unknown function compare
PP_3902 -0.6 -1.6 conserved protein of unknown function compare
PP_1426 -0.6 -4.7 L-aspartate oxidase compare
PP_4581 -0.6 -1.3 putative amidotransferase compare
PP_3903 -0.6 -1.4 conserved protein of unknown function compare
PP_1917 -0.6 -3.7 4-amino-4-deoxychorismate lyase compare
PP_2929 -0.6 -3.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4471 -0.6 -2.2 Magnesium transporter compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Lauric acid in Pseudomonas putida KT2440

For carbon source Lauric acid across organisms