Experiment set15IT058 for Pseudomonas putida KT2440

Compare to:

Decanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_5659 -6.7 -6.2 protein of unknown function compare
PP_4724 -6.6 -4.6 Carbamoyl-phosphate synthase small chain compare
PP_4723 -6.5 -7.8 Carbamoyl-phosphate synthase large chain compare
PP_0293 -6.4 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5155 -6.3 -8.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2136 -6.2 -4.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0290 -6.1 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -6.0 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_1237 -5.8 -3.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0356 -5.6 -11.3 malate synthase G compare
PP_0967 -5.5 -12.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.4 -11.9 3-isopropylmalate dehydrogenase compare
PP_4116 -5.2 -13.2 isocitrate lyase compare
PP_4909 -5.2 -11.1 phosphoserine phosphatase compare
PP_1109 -5.0 -11.9 Transcriptional regulator, GntR family compare
PP_0082 -5.0 -6.0 tryptophan synthase alpha chain compare
PP_1079 -5.0 -7.2 Ornithine carbamoyltransferase compare
PP_1985 -4.9 -7.2 3-isopropylmalate dehydratase large subunit compare
PP_4680 -4.9 -18.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.9 -13.7 Argininosuccinate synthase compare
PP_0184 -4.7 -7.8 Argininosuccinate lyase compare
PP_4678 -4.5 -15.5 Ketol-acid reductoisomerase compare
PP_5015 -4.4 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0292 -4.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -4.4 -8.3 tryptophan synthase beta chain compare
PP_0289 -4.3 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0966 -4.2 -12.0 Histidinol dehydrogenase compare
PP_4700 -4.2 -5.7 pantothenate synthetase compare
PP_0422 -4.2 -8.8 Indole-3-glycerol phosphate synthase compare
PP_4799 -4.2 -2.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5014 -4.2 -4.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_5128 -4.1 -9.2 Dihydroxy-acid dehydratase compare
PP_3999 -4.1 -10.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4549 -4.1 -14.6 long-chain-fatty-acid/CoA ligase compare
PP_1111 -4.0 -11.9 putative Synthetase compare
PP_5185 -4.0 -8.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0691 -4.0 -6.0 Glutamate 5-kinase compare
PP_3511 -4.0 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_1664 -3.9 -7.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_0965 -3.7 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4890 -3.6 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4999 -3.6 -2.5 dihydroorotase-like protein compare
PP_1912 -3.5 -7.1 Phosphate acyltransferase compare
PP_0417 -3.5 -17.7 Anthranilate synthase component 1 compare
PP_2371 -3.4 -8.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -3.4 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1231 -3.4 -7.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5289 -3.4 -7.5 Acetylglutamate kinase compare
PP_1995 -3.3 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -3.3 -9.8 methionine biosynthesis protein MetW compare
PP_5097 -3.3 -14.8 homoserine O-acetyltransferase compare
PP_1110 -3.3 -3.9 serine acetyltransferase compare
PP_5085 -3.2 -9.1 malic enzyme B compare
PP_0368 -3.2 -14.0 putative Acyl-CoA dehydrogenase compare
PP_2001 -3.1 -11.8 O-succinylhomoserine sulfhydrylase compare
PP_5095 -3.0 -2.6 pyrroline-5-carboxylate reductase compare
PP_4699 -3.0 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2328 -3.0 -8.4 Phosphoadenosine phosphosulfate reductase compare
PP_2327 -3.0 -8.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0420 -3.0 -9.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1025 -2.9 -12.3 2-isopropylmalate synthase compare
PP_0421 -2.9 -7.6 Anthranilate phosphoribosyltransferase compare
PP_0164 -2.9 -13.0 conserved protein of unknown function compare
PP_0787 -2.8 -6.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4129 -2.7 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2370 -2.6 -2.9 conserved protein of unknown function compare
PP_1186 -2.5 -3.3 two component system DNA-binding transcriptional dual regulator compare
PP_4122 -2.3 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2356 -2.3 -10.7 putative Phytochrome family protein compare
PP_2031 -2.3 -2.1 conserved protein of unknown function compare
PP_5303 -2.2 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5028 -1.9 -3.2 proline iminopeptidase compare
PP_3790 -1.9 -11.3 diaminopimelate epimerase compare
PP_4693 -1.9 -5.1 RNA polymerase-binding transcription factor DksA compare
PP_4943 -1.9 -2.2 putative Glycosyl transferase compare
PP_4120 -1.8 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_1353 -1.8 -2.0 conserved membrane protein of unknown function compare
PP_1055 -1.7 -2.5 Type II secretion pathway protein GspN compare
PP_5309 -1.7 -1.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5347 -1.7 -9.3 pyruvate carboxylase subunit A compare
PP_4550 -1.7 -8.9 long-chain-fatty-acid/CoA ligase compare
PP_0393 -1.7 -2.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0735 -1.7 -2.5 molybdopterin-synthase adenylyltransferase compare
PP_5346 -1.7 -8.3 pyruvate carboxylase subunit B compare
PP_4364 -1.7 -4.6 putative Anti-sigma F factor antagonist compare
PP_3248 -1.6 -2.3 Dyp-type peroxidase family protein compare
PP_4964 -1.6 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_0856 -1.5 -1.8 conserved lipoprotein of unknown function compare
PP_4940 -1.5 -7.5 Putative glycosyltransferase compare
PP_2336 -1.5 -2.3 aconitate hydratase 1 compare
PP_4131 -1.5 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_4124 -1.5 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_5348 -1.5 -9.8 Transcriptional regulator, LysR family compare
PP_2433 -1.5 -2.3 conserved protein of unknown function compare
PP_1764 -1.5 -7.8 Phosphoglycolate phosphatase 2 compare
PP_0291 -1.5 -1.6 conserved protein of unknown function compare
PP_1941 -1.5 -6.2 conserved protein of unknown function compare
PP_2137 -1.4 -2.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_2354 -1.4 -8.6 Sensory box histidine kinase/response regulator compare
PP_4880 -1.4 -7.9 exoribonuclease R compare
PP_1826 -1.4 -2.8 Hydrolase, isochorismatase family compare
PP_4130 -1.4 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4121 -1.4 -3.6 NADH-quinone oxidoreductase subunit C/D compare
PP_5035 -1.4 -5.3 Histidine utilization repressor compare
PP_1428 -1.4 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_1589 -1.4 -6.2 uridylyltransferase compare
PP_5705 -1.3 -2.4 protein of unknown function compare
PP_t29 -1.3 -2.0 tRNA-Ala compare
PP_3821 -1.3 -7.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2000 -1.3 -2.3 amidophosphoribosyl transferase compare
PP_4058 -1.3 -7.4 1,4-alpha-glucan branching enzyme compare
PP_0435 -1.3 -9.3 Peptidase, M23/M37 family compare
PP_0888 -1.3 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_3312 -1.2 -2.1 putative Heat shock protein compare
PP_1233 -1.2 -4.4 sulfurtransferase compare
PP_1215 -1.2 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5528 -1.2 -1.4 conserved protein of unknown function compare
PP_4782 -1.2 -3.9 Phosphomethylpyrimidine kinase compare
PP_4126 -1.2 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_0370 -1.2 -8.9 Acyl-CoA dehydrogenase family protein compare
PP_5216 -1.2 -1.8 exopolyphosphatase compare
PP_5628 -1.1 -3.4 conserved protein of unknown function compare
PP_3726 -1.1 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_2475 -1.1 -3.2 Transcriptional regulator, TetR family compare
PP_4696 -1.1 -2.8 Nitrogen regulation protein NR(I) compare
PP_2087 -1.1 -2.4 CmpX protein compare
PP_3505 -1.1 -1.8 conserved protein of unknown function compare
PP_1493 -1.1 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2388 -1.1 -3.7 Transporter, LysE family compare
PP_1629 -1.0 -3.6 Protein RecA compare
PP_5227 -1.0 -5.3 diaminopimelate decarboxylase compare
PP_5114 -1.0 -2.3 putative adenine methyltransferase compare
PP_1468 -1.0 -1.5 Tyrosine recombinase XerD compare
PP_2028 -1.0 -3.1 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4482 -1.0 -2.4 Transcriptional regulator, AraC family compare
PP_0063 -1.0 -2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1654 -1.0 -2.5 cysteine synthase B compare
PP_3590 -1.0 -4.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4988 -1.0 -4.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2302 -1.0 -3.3 DNA-binding, ATP-dependent protease compare
PP_5104 -1.0 -4.3 thiazole synthase compare
PP_1917 -1.0 -5.2 4-amino-4-deoxychorismate lyase compare
PP_4937 -1.0 -2.0 toluene tolerance protein compare
PP_3603 -1.0 -3.6 Transcriptional regulator, GntR family compare
PP_5007 -0.9 -1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5352 -0.9 -5.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4989 -0.9 -2.5 Protein PilJ compare
PP_0855 -0.9 -1.6 conserved protein of unknown function compare
PP_0362 -0.9 -6.2 Biotin synthase compare
PP_3833 -0.9 -3.7 Response regulator compare
PP_1812 -0.9 -3.1 conserved protein of unknown function compare
PP_3902 -0.9 -2.7 conserved protein of unknown function compare
PP_0834 -0.9 -1.0 Sec translocation complex subunit YajC compare
PP_5236 -0.9 -5.2 conserved protein of unknown function compare
PP_1217 -0.9 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5027 -0.9 -2.4 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4824 -0.9 -3.2 Sensor histidine kinase/response regulator compare
PP_0248 -0.9 -5.9 Probable alpha-L-glutamate ligase compare
PP_4642 -0.8 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_4910 -0.8 -2.0 conserved protein of unknown function compare
PP_1734 -0.8 -2.0 Probable septum site-determining protein MinC compare
PP_1304 -0.8 -4.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1355 -0.8 -7.7 Muropeptide permease AmpG compare
PP_1214 -0.8 -1.7 putative transcriptional regulatory protein compare
PP_1036 -0.8 -3.6 membrane-bound lytic murein transglycosylase F compare
PP_4942 -0.8 -1.5 conserved protein of unknown function compare
PP_1968 -0.8 -3.6 TetR family transcriptional regulator compare
PP_1045 -0.8 -1.8 Type II secretion pathway protein XcpP compare
PP_4993 -0.8 -2.5 Glutathione synthetase compare
PP_2390 -0.8 -3.5 Transcriptional regulator, LysR family compare
PP_1303 -0.8 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_5717 -0.8 -2.2 conserved protein of unknown function compare
PP_5324 -0.8 -2.1 Response regulator compare
PP_2868 -0.8 -4.1 Transcriptional regulator, Cro/CI family compare
PP_2145 -0.8 -6.1 beta-N-acetylglucosaminidase compare
PP_4073 -0.8 -2.2 conserved exported protein of unknown function compare
PP_5640 -0.8 -2.3 conserved protein of unknown function compare
PP_4480 -0.8 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_4342 -0.8 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_2575 -0.8 -2.1 conserved exported protein of unknown function compare
PP_1583 -0.8 -4.0 putative Structural protein P5 compare
PP_0513 -0.8 -1.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5310 -0.8 -2.8 junction-specific ATP-dependent DNA helicase compare
PP_2402 -0.8 -1.3 putative Sensor histidine kinase compare
PP_4922 -0.8 -5.9 Phosphomethylpyrimidine synthase compare
PP_0401 -0.8 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_0960 -0.8 -3.1 phospholipid ABC transporter binding protein compare
PP_3102 -0.8 -2.7 conserved protein of unknown function compare
PP_t11 -0.7 -1.2 tRNA-Lys compare
PP_0980 -0.7 -3.1 Probable cytosol aminopeptidase compare
PP_5575 -0.7 -1.8 conserved protein of unknown function compare
PP_0405 -0.7 -6.5 conserved protein of unknown function compare
PP_1800 -0.7 -4.6 Oxidoreductase Rmd compare
PP_1763 -0.7 -2.9 putative oxidoreductase compare
PP_0914 -0.7 -4.7 GGDEF domain protein compare
PP_3819 -0.7 -4.0 glutathione reductase (NADPH) compare
PP_0363 -0.7 -5.3 8-amino-7-oxononanoate synthase compare
PP_4546 -0.7 -2.0 ATP-dependent helicase HrpA compare
PP_5381 -0.7 -2.2 hypothetical protein compare
PP_0434 -0.7 -5.0 Anhydro-N-acetylmuramic acid kinase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Decanoic acid in Pseudomonas putida KT2440

For carbon source Decanoic acid across organisms