Experiment set15IT055 for Pseudomonas putida KT2440

Compare to:

3-Methyl-2-Oxobutanoic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +1.6 12.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_4994 +1.6 8.8 conserved protein of unknown function compare
PP_1650 +1.5 14.7 Sensor protein GacS compare
PP_4099 +1.4 14.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4504 +1.4 2.6 conserved exported protein of unknown function compare
PP_2581 +1.1 2.3 conserved protein of unknown function compare
PP_2144 +1.0 3.8 Transcriptional regulator, TetR family compare
PP_4171 +1.0 8.7 conserved exported protein of unknown function compare
PP_1562 +1.0 2.2 putative Phage terminase, small subunit compare
PP_1898 +1.0 2.9 MotA/TolQ/ExbB proton channel family protein compare
PP_1113 +0.9 7.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0547 +0.9 3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0138 +0.8 5.6 conserved membrane protein of unknown function compare
PP_4271 +0.8 0.9 conserved protein of unknown function compare
PP_3198 +0.8 1.7 Ferredoxin, 2Fe-2S compare
PP_3035 +0.8 2.8 conserved protein of unknown function compare
PP_4227 +0.8 2.0 conserved protein of unknown function compare
PP_0262 +0.7 4.8 conserved protein of unknown function compare
PP_1778 +0.7 3.7 Lipopolysaccharide ABC export system, permease protein compare
PP_2459 +0.7 2.3 ribose pyranase compare
PP_1004 +0.7 1.7 conserved protein of unknown function compare
PP_3098 +0.7 1.3 conserved protein of unknown function compare
PP_0274 +0.7 2.3 putative transcriptional regulator containing HTH domain compare
PP_2387 +0.7 2.1 conserved protein of unknown function compare
PP_1779 +0.7 4.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1528 +0.7 1.2 conserved protein of unknown function compare
PP_4373 +0.6 5.5 Transcriptional regulator FleQ compare
PP_2883 +0.6 1.8 conserved protein of unknown function compare
PP_0398 +0.6 2.0 Thiosulfate sulfurtransferase GlpE compare
PP_4054 +0.6 1.5 conserved protein of unknown function compare
PP_3810 +0.6 2.8 conserved protein of unknown function compare
PP_5159 +0.6 3.2 conserved protein of unknown function compare
PP_4406 +0.6 2.1 conserved protein of unknown function compare
PP_1410 +0.6 1.2 conserved protein of unknown function compare
PP_4370 +0.6 2.5 Flagellar hook-basal body complex protein FliE compare
PP_0195 +0.6 2.4 conserved protein of unknown function compare
PP_1293 +0.6 1.1 molybdopterin synthase small subunit compare
PP_0240 +0.5 2.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1503 +0.5 1.4 conserved protein of unknown function compare
PP_0640 +0.5 2.5 conserved protein of unknown function compare
PP_2313 +0.5 2.1 conserved membrane protein of unknown function compare
PP_4050 +0.5 4.8 glycogen synthase compare
PP_3578 +0.5 3.6 phosphoglucomutase compare
PP_5456 +0.5 1.2 conserved protein of unknown function compare
PP_5423 +0.5 1.4 conserved membrane protein of unknown function compare
PP_5667 +0.5 1.8 putative microcin B17-like-processing protein, McbC family compare
PP_4845 +0.5 2.1 putative Urea ABC transporter, ATP-binding protein compare
PP_5644 +0.5 2.2 conserved membrane protein of unknown function compare
PP_5073 +0.5 1.5 conserved exported protein of unknown function compare
PP_0674 +0.5 3.7 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4208 +0.5 3.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4217 +0.5 4.7 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4707 +0.5 1.5 OsmY-related protein compare
PP_0540 +0.5 3.1 conserved inner membrane protein compare
PP_2742 +0.5 2.2 conserved protein of unknown function compare
PP_5110 +0.5 0.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0508 +0.5 1.6 conserved exported protein of unknown function compare
PP_1550 +0.5 2.3 Transcriptional regulator, Cro/CI family compare
PP_2677 +0.5 1.6 conserved exported protein of unknown function compare
PP_4944 +0.5 1.3 Carbamoyltransferase compare
PP_3411 +0.5 1.0 conserved protein of unknown function compare
PP_4015 +0.5 2.9 HflD-like high frequency lysogenization protein compare
PP_3821 +0.5 3.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2816 +0.5 1.7 putative Transcriptional regulator NfxB compare
PP_5039 +0.5 1.4 conserved protein of unknown function compare
PP_3908 +0.5 1.6 conserved protein of unknown function compare
PP_1804 +0.5 3.9 Glycosyl transferase WbpL compare
PP_4367 +0.5 1.2 Flagellar assembly protein FliH compare
PP_2773 +0.4 1.2 conserved protein of unknown function compare
PP_2672 +0.4 2.4 Transcriptional activator protein ExaE compare
PP_1226 +0.4 1.9 pre-queuosine 0 synthase compare
PP_t13 +0.4 1.1 tRNA-Lys compare
PP_2061 +0.4 2.0 conserved protein of unknown function compare
PP_0893 +0.4 1.1 ThiJ/PfpI family protein compare
PP_2756 +0.4 0.8 conserved protein of unknown function compare
PP_2889 +0.4 1.5 putative Transmembrane regulator PrtR compare
PP_5200 +0.4 3.3 proline aminopeptidase P II compare
PP_4835 +0.4 0.9 conserved exported protein of unknown function compare
PP_5572 +0.4 2.3 protein of unknown function compare
PP_4385 +0.4 2.1 flagellar basal-body rod protein FlgG compare
PP_5194 +0.4 2.7 aminomethyltransferase compare
PP_4593 +0.4 0.8 conserved protein of unknown function compare
PP_4560 +0.4 2.6 putative Ribonuclease BN compare
PP_4172 +0.4 1.9 conserved exported protein of unknown function compare
PP_0407 +0.4 2.1 DnaJ-like protein DjlA compare
PP_0001 +0.4 0.8 probable chromosome-partitioning protein compare
PP_1766 +0.4 2.2 methylthioribose-1-phosphate isomerase compare
PP_4561 +0.4 0.7 stress response protein compare
PP_0058 +0.4 4.0 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0502 +0.4 1.9 conserved protein of unknown function compare
PP_3380 +0.4 1.5 2-ketogluconate utilization repressor compare
PP_5295 +0.4 1.1 conserved protein of unknown function compare
PP_2695 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_4356 +0.4 2.1 Flagellar protein FliO compare
PP_0168 +0.4 3.9 putative surface adhesion protein compare
PP_4519 +0.4 3.7 Agglutination protein compare
PP_2457 +0.4 2.7 DNA-binding transcriptional repressor compare
PP_2002 +0.4 1.4 putative enzyme compare
PP_2009 +0.4 2.4 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_4981 +0.4 1.6 polyisoprene-binding protein, acidic stress response factor compare
PP_1776 +0.4 3.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2031 +0.4 1.0 conserved protein of unknown function compare
PP_5017 +0.4 0.8 Sec-independent protein translocase protein TatB compare
PP_4265 +0.4 1.4 DNA-binding transcriptional dual regulator compare
PP_5714 +0.4 1.9 conserved protein of unknown function compare
PP_3608 +0.4 3.0 Transcriptional regulator, LysR family compare
PP_3523 +0.4 2.2 conserved protein of unknown function compare
PP_0239 +0.4 2.0 aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate compare
PP_0593 +0.4 0.5 putative ribosome-binding factor compare
PP_0820 +0.4 2.0 GCN5-related N-acetyltransferase compare
PP_4982 +0.4 2.0 putative cytochrome b561, iron-regulated compare
PP_2999 +0.4 0.9 Glyoxalase family protein compare
PP_0833 +0.4 1.0 queuine tRNA-ribosyltransferase compare
PP_5055 +0.4 1.4 Sulfurtransferase compare
PP_2150 +0.4 1.4 putative Thiamine biosynthesis lipoprotein compare
PP_3831 +0.4 2.5 conserved protein of unknown function compare
PP_5184 +0.4 2.5 glutamylpolyamine synthetase compare
PP_5430 +0.4 1.0 protein of unknown function compare
PP_4006 +0.4 2.9 Putative arginyl-tRNA--protein transferase compare
PP_4509 +0.4 1.7 conserved protein of unknown function compare
PP_2835 +0.4 1.7 putative oxidoreductase compare
PP_4218 +0.4 2.3 Lipase/esterase family protein compare
PP_3874 +0.4 1.0 conserved protein of unknown function compare
PP_2939 +0.4 2.1 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2103 +0.4 1.2 conserved protein of unknown function compare
PP_0574 +0.4 3.0 DNA-binding response regulator, LuxR family compare
PP_0355 +0.4 1.7 Response regulator compare
PP_3624 +0.4 2.7 conserved exported protein of unknown function compare
PP_0959 +0.4 1.0 phospholipid ABC transporter compare
PP_3799 +0.4 1.8 conserved exported protein of unknown function compare
PP_2318 +0.4 1.9 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_3522 +0.4 1.1 conserved protein of unknown function compare
PP_4424 +0.4 1.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1512 +0.4 1.3 conserved protein of unknown function compare
PP_0340 +0.4 3.0 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1748 +0.4 2.1 conserved protein of unknown function compare
PP_3901 +0.4 2.1 conserved protein of unknown function compare
PP_3944 +0.4 2.5 6-hydroxynicotinate 3-monooxygenase compare
PP_5106 +0.4 1.4 conserved inner membrane protein compare
PP_3884 +0.4 1.3 Phage holin, lambda family compare
PP_0886 +0.4 2.0 conserved exported protein of unknown function compare
PP_0254 +0.4 1.8 conserved protein of unknown function compare
PP_1062 +0.4 1.6 MutT/nudix family protein compare
PP_2197 +0.4 2.1 conserved exported protein of unknown function compare
PP_4771 +0.4 1.7 conserved membrane protein of unknown function compare
PP_4173 +0.4 2.1 Sensor histidine kinase/response regulator compare
PP_5545 +0.4 1.9 protein of unknown function compare
PP_5636 +0.4 2.0 protein of unknown function compare
PP_3480 +0.4 1.6 conserved protein of unknown function compare
PP_1987 +0.4 0.8 Methlytransferase, UbiE/COQ5 family compare
PP_5145 +0.3 3.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2254 +0.3 1.8 Transcriptional regulator, GntR family compare
PP_0273 +0.3 1.0 conserved protein of unknown function compare
PP_1181 +0.3 1.7 DNA-binding response regulator compare
PP_5552 +0.3 1.2 conserved protein of unknown function compare
PP_1674 +0.3 1.3 5,6-dimethylbenzimidazole synthase compare
PP_4534 +0.3 1.6 conserved protein of unknown function compare
PP_1067 +0.3 2.7 Sensor histidine kinase compare
PP_3803 +0.3 1.9 putative Cation ABC transporter, permease protein compare
PP_4296 +0.3 0.5 conserved exported protein of unknown function compare
PP_1218 +0.3 1.3 putative acyl-CoA thioesterase compare
PP_2700 +0.3 0.7 AhpC/TSA family protein compare
PP_0536 +0.3 1.2 conserved protein of unknown function compare
PP_4470 +0.3 2.2 putative transcriptional regulator (Arc domain-containing) compare
PP_0166 +0.3 3.0 HlyD family secretion protein compare
PP_3495 +0.3 1.3 tRNA (adenine(22)-N(1))-methyltransferase compare
PP_3716 +0.3 2.4 HTH-type transcriptional regulator compare
PP_2845 +0.3 1.3 urease subunit alpha compare
PP_2972 +0.3 1.0 conserved protein of unknown function compare
PP_0961 +0.3 2.3 toluene tolerance protein compare
PP_1454 +0.3 1.8 conserved protein of unknown function compare
PP_1224 +0.3 2.0 periplasmic subunit of the TolQRA transport system compare
PP_2998 +0.3 1.4 2-dehydropantoate 2-reductase compare
PP_5221 +0.3 1.9 conserved protein of unknown function, UPF0178 family compare
PP_5053 +0.3 1.7 Protein-export protein SecB compare
PP_3875 +0.3 1.8 conserved protein of unknown function compare
PP_5725 +0.3 2.0 protein of unknown function compare
PP_2943 +0.3 2.3 putative Cytochrome c551 peroxidase compare
PP_5083 +0.3 1.1 putative Type IV pili biogenesis protein PilM compare
PP_2105 +0.3 1.5 conserved protein of unknown function compare
PP_3173 +0.3 1.6 N-ethylmaleimide reductase, FMN-linked compare
PP_2643 +0.3 1.3 aromatic acid chemoreceptor compare
PP_1328 +0.3 0.6 Protein MraZ compare
PP_2681 +0.3 1.0 coenzyme PQQ synthesis protein D compare
PP_1799 +0.3 2.8 GDP-mannose 4,6-dehydratase compare
PP_2104 +0.3 2.1 conserved membrane protein of unknown function compare
PP_2741 +0.3 2.2 conserved membrane protein of unknown function compare
PP_0191 +0.3 1.6 Transcriptional regulatory protein AlgQ compare
PP_3935 +0.3 0.8 conserved protein of unknown function compare
PP_0153 +0.3 0.7 hypothetical protein compare
PP_2319 +0.3 2.2 conserved protein of unknown function compare
PP_3943 +0.3 2.5 N-formylmaleamate deformylase compare
PP_5054 +0.3 0.5 glutaredoxin 3 compare
PP_5288 +0.3 2.2 Phosphomannomutase/phosphoglucomutase compare
PP_2764 +0.3 0.9 FMN reductase (NADPH) compare
PP_3245 +0.3 1.0 conserved protein of unknown function compare
PP_0513 +0.3 1.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4390 +0.3 2.5 flagellar basal-body rod protein FlgC compare
PP_1551 +0.3 2.3 putative Phage replication protein O compare
PP_3509 +0.3 1.5 Glyoxalase family protein compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source 3-Methyl-2-Oxobutanoic Acid in Pseudomonas putida KT2440

For carbon source 3-Methyl-2-Oxobutanoic Acid across organisms