Experiment set15IT054 for Pseudomonas putida KT2440

Compare to:

Butyl stearate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4799 -4.4 -4.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2137 -4.1 -4.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_4999 -4.0 -2.8 dihydroorotase-like protein compare
PP_3821 -3.7 -12.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5155 -3.6 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4699 -3.6 -7.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4700 -3.5 -6.3 pantothenate synthetase compare
PP_4943 -3.5 -2.4 putative Glycosyl transferase compare
PP_1468 -3.3 -4.5 Tyrosine recombinase XerD compare
PP_4129 -3.2 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0083 -3.1 -8.3 tryptophan synthase beta chain compare
PP_0691 -3.0 -5.3 Glutamate 5-kinase compare
PP_1778 -2.9 -7.6 Lipopolysaccharide ABC export system, permease protein compare
PP_4058 -2.9 -14.1 1,4-alpha-glucan branching enzyme compare
PP_1986 -2.9 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_4940 -2.8 -9.8 Putative glycosyltransferase compare
PP_1664 -2.8 -5.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_5659 -2.8 -8.4 protein of unknown function compare
PP_2136 -2.7 -5.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4724 -2.6 -7.7 Carbamoyl-phosphate synthase small chain compare
PP_1216 -2.6 -3.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2000 -2.6 -4.2 amidophosphoribosyl transferase compare
PP_2018 -2.6 -6.6 adhesin-associated BNR repeat protein (from data) compare
PP_1237 -2.5 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1428 -2.5 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_4679 -2.5 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -2.5 -9.1 Dihydroxy-acid dehydratase compare
PP_4909 -2.5 -8.9 phosphoserine phosphatase compare
PP_5014 -2.4 -3.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -2.4 -5.1 Nitrogen regulation protein NR(I) compare
PP_5095 -2.3 -2.8 pyrroline-5-carboxylate reductase compare
PP_1215 -2.3 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_1353 -2.3 -2.7 conserved membrane protein of unknown function compare
PP_0184 -2.3 -7.3 Argininosuccinate lyase compare
PP_4680 -2.2 -12.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4098 -2.2 -3.5 UvrABC system protein C compare
PP_0368 -2.2 -9.9 putative Acyl-CoA dehydrogenase compare
PP_0766 -2.2 -13.1 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_5289 -2.2 -5.3 Acetylglutamate kinase compare
PP_5015 -2.1 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5309 -2.1 -1.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2371 -2.1 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1988 -2.1 -8.0 3-isopropylmalate dehydrogenase compare
PP_0765 -2.1 -14.1 putative adhesin (DUF1302) (from data) compare
PP_0856 -2.1 -2.0 conserved lipoprotein of unknown function compare
PP_4678 -2.1 -11.5 Ketol-acid reductoisomerase compare
PP_4723 -2.0 -10.9 Carbamoyl-phosphate synthase large chain compare
PP_1088 -2.0 -9.8 Argininosuccinate synthase compare
PP_4693 -2.0 -5.8 RNA polymerase-binding transcription factor DksA compare
PP_0965 -1.9 -11.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2336 -1.9 -2.8 aconitate hydratase 1 compare
PP_4116 -1.9 -10.5 isocitrate lyase compare
PP_2370 -1.9 -3.0 conserved protein of unknown function compare
PP_2019 -1.9 -12.4 adhesin-associated MmpL efflux pump (from data) compare
PP_0290 -1.9 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -1.9 -7.0 tryptophan synthase alpha chain compare
PP_5028 -1.9 -4.4 proline iminopeptidase compare
PP_2903 -1.9 -1.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0063 -1.8 -3.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0393 -1.8 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1528 -1.8 -1.8 conserved protein of unknown function compare
PP_0833 -1.8 -2.9 queuine tRNA-ribosyltransferase compare
PP_0967 -1.8 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1186 -1.8 -3.3 two component system DNA-binding transcriptional dual regulator compare
PP_4122 -1.8 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4890 -1.8 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1025 -1.8 -9.6 2-isopropylmalate synthase compare
PP_5185 -1.8 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3946 -1.8 -1.7 HTH-type transcriptional repressor NicR compare
PP_t29 -1.8 -1.8 tRNA-Ala compare
PP_1985 -1.8 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_0356 -1.8 -7.3 malate synthase G compare
PP_3511 -1.8 -6.6 Branched-chain-amino-acid aminotransferase compare
PP_4695 -1.8 -8.1 Sensory box histidine kinase compare
PP_5098 -1.7 -7.4 methionine biosynthesis protein MetW compare
PP_3999 -1.7 -7.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5097 -1.7 -11.4 homoserine O-acetyltransferase compare
PP_0767 -1.6 -9.5 Transcriptional regulator, LuxR family compare
PP_0293 -1.6 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1826 -1.6 -4.2 Hydrolase, isochorismatase family compare
PP_0422 -1.6 -5.7 Indole-3-glycerol phosphate synthase compare
PP_0292 -1.6 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -1.6 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0959 -1.6 -2.3 phospholipid ABC transporter compare
PP_0966 -1.6 -8.0 Histidinol dehydrogenase compare
PP_1734 -1.5 -4.2 Probable septum site-determining protein MinC compare
PP_4121 -1.5 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PP_2327 -1.5 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0435 -1.5 -11.2 Peptidase, M23/M37 family compare
PP_1022 -1.5 -3.8 glucose 6-phosphate-1-dehydrogenase compare
PP_4004 -1.4 -3.1 DNA translocase FtsK compare
PP_2087 -1.4 -2.2 CmpX protein compare
PP_4130 -1.4 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0962 -1.4 -3.4 toluene-tolerance protein compare
PP_1764 -1.4 -7.1 Phosphoglycolate phosphatase 2 compare
PP_5052 -1.4 -2.9 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_5227 -1.4 -6.2 diaminopimelate decarboxylase compare
PP_3248 -1.4 -2.4 Dyp-type peroxidase family protein compare
PP_1328 -1.4 -1.4 Protein MraZ compare
PP_5352 -1.4 -7.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1779 -1.4 -4.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2001 -1.3 -7.5 O-succinylhomoserine sulfhydrylase compare
PP_0417 -1.3 -10.1 Anthranilate synthase component 1 compare
PP_2880 -1.3 -3.3 Transcriptional regulator, TetR family compare
PP_2356 -1.3 -7.6 putative Phytochrome family protein compare
PP_4964 -1.2 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_0164 -1.2 -6.2 conserved protein of unknown function compare
PP_1654 -1.2 -3.2 cysteine synthase B compare
PP_3649 -1.2 -4.0 Transcriptional regulator, GntR family compare
PP_1995 -1.2 -4.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1968 -1.2 -4.0 TetR family transcriptional regulator compare
PP_1079 -1.2 -3.7 Ornithine carbamoyltransferase compare
PP_5054 -1.2 -2.0 glutaredoxin 3 compare
PP_4131 -1.2 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_3539 -1.1 -2.1 putative Transcriptional regulator compare
PP_2475 -1.1 -3.8 Transcriptional regulator, TetR family compare
PP_4936 -1.1 -4.9 O-antigen polymerase compare
PP_5007 -1.1 -2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4549 -1.1 -6.2 long-chain-fatty-acid/CoA ligase compare
PP_0002 -1.1 -4.8 probable chromosome partition protein compare
PP_2163 -1.1 -5.1 VacJ lipoprotein compare
PP_2806 -1.1 -5.5 Transcriptional regulator, TetR family compare
PP_2328 -1.1 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_2433 -1.1 -1.7 conserved protein of unknown function compare
PP_0421 -1.1 -5.6 Anthranilate phosphoribosyltransferase compare
PP_4124 -1.0 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_1054 -1.0 -1.8 Type II secretion pathway protein XcpZ compare
PP_3902 -1.0 -2.3 conserved protein of unknown function compare
PP_1187 -1.0 -4.9 sensor protein compare
PP_3312 -1.0 -1.9 putative Heat shock protein compare
PP_4994 -1.0 -2.5 conserved protein of unknown function compare
PP_0312 -0.9 -4.3 electron transfer flavoprotein, alpha subunit compare
PP_4364 -0.9 -2.7 putative Anti-sigma F factor antagonist compare
PP_4824 -0.9 -3.7 Sensor histidine kinase/response regulator compare
PP_0420 -0.9 -6.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3926 -0.9 -1.8 short-chain dehydrogenase compare
PP_0123 -0.9 -4.5 DNA polymerase I, 5 compare
PP_1055 -0.9 -1.8 Type II secretion pathway protein GspN compare
PP_1493 -0.9 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1076 -0.9 -5.4 aquaglyceroporin compare
PP_0127 -0.9 -3.2 Thiol:disulfide interchange protein compare
PP_0065 -0.9 -1.9 NAD-binding component of TrK potassium transporter compare
PP_0001 -0.9 -1.1 probable chromosome-partitioning protein compare
PP_2145 -0.9 -6.5 beta-N-acetylglucosaminidase compare
PP_0961 -0.9 -4.5 toluene tolerance protein compare
PP_2044 -0.9 -1.8 conserved inner membrane protein of unknown function compare
PP_2429 -0.9 -1.6 putative Membrane protein compare
PP_2302 -0.9 -2.6 DNA-binding, ATP-dependent protease compare
PP_5114 -0.9 -1.8 putative adenine methyltransferase compare
PP_4320 -0.9 -4.2 cytochrome c-type biogenesis protein compare
PP_2442 -0.8 -1.9 conserved protein of unknown function, DUF480 family compare
PP_1075 -0.8 -6.7 glycerol kinase compare
PP_5507 -0.8 -2.9 protein of unknown function compare
PP_4671 -0.8 -3.4 conserved exported protein of unknown function compare
PP_2307 -0.8 -1.1 conserved protein of unknown function compare
PP_5217 -0.8 -7.0 Polyphosphate kinase compare
PP_0852 -0.8 -1.6 Transcriptional regulator, Cro/CI family compare
PP_1699 -0.8 -4.0 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_3245 -0.8 -1.8 conserved protein of unknown function compare
PP_2402 -0.8 -1.2 putative Sensor histidine kinase compare
PP_3833 -0.8 -3.0 Response regulator compare
PP_1208 -0.8 -1.5 conserved protein of unknown function, SlyX family compare
PP_0434 -0.8 -6.4 Anhydro-N-acetylmuramic acid kinase compare
PP_2341 -0.8 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4254 -0.8 -1.9 conserved protein of unknown function compare
PP_1656 -0.8 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_5000 -0.8 -0.8 peptidase component of the ATP-dependent HslVU protease compare
PP_3808 -0.8 -1.1 Antibiotic synthesis protein MbtH compare
PP_0291 -0.7 -1.3 conserved protein of unknown function compare
PP_3102 -0.7 -2.3 conserved protein of unknown function compare
PP_0246 -0.7 -1.6 two-component system DNA-binding response transcriptional dual regulator compare
PP_5338 -0.7 -1.6 aspartate ammonia-lyase compare
PP_1176 -0.7 -1.7 conserved protein of unknown function compare
PP_0405 -0.7 -6.6 conserved protein of unknown function compare
PP_1021 -0.7 -3.3 DNA-binding transcriptional regulator compare
PP_2354 -0.7 -4.4 Sensory box histidine kinase/response regulator compare
PP_4705 -0.7 -2.8 Glyoxalase compare
PP_1677 -0.7 -2.3 Adenosyl-cobyric acid synthase compare
PP_5453 -0.7 -1.9 conserved protein of unknown function compare
PP_3819 -0.7 -3.5 glutathione reductase (NADPH) compare
PP_5004 -0.7 -3.7 Poly(3-hydroxyalkanoate) depolymerase compare
PP_0958 -0.7 -2.7 phospholipid ABC transporter ATP-binding subunit compare
PP_4804 -0.7 -2.6 RlpA-like lipoprotein compare
PP_3346 -0.7 -2.4 Nickel transporter ATP-binding protein compare
PP_1224 -0.7 -2.7 periplasmic subunit of the TolQRA transport system compare
PP_1570 -0.7 -1.8 Head-tail adaptor compare
PP_5423 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_0440 -0.7 -2.2 Elongation factor Tu-A compare
PP_1589 -0.7 -4.2 uridylyltransferase compare
PP_3460 -0.7 -1.9 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4471 -0.7 -2.0 Magnesium transporter compare
PP_0887 -0.7 -3.6 Sensor histidine kinase compare
PP_5073 -0.7 -1.1 conserved exported protein of unknown function compare
PP_0787 -0.7 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1906 -0.7 -2.2 ribosomal large subunit pseudouridine synthase C compare
PP_1629 -0.7 -2.0 Protein RecA compare
PP_0025 -0.6 -1.0 hypothetical protein compare
PP_4565 -0.6 -4.8 Isocitrate dehydrogenase kinase/phosphatase compare
PP_0126 -0.6 -3.2 Cytochrome c4 compare
PP_0092 -0.6 -3.1 putative lipoprotein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Butyl stearate in Pseudomonas putida KT2440

For carbon source Butyl stearate across organisms