Experiment set15IT027 for Agrobacterium fabrum C58

Compare to:

Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu3544 -6.9 -12.4 arsenical pump membrane protein compare
Atu2183 -6.8 -4.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0978 -6.6 -7.8 two component response regulator compare
Atu4614 -6.0 -7.1 glycosyltransferase compare
Atu2522 -5.9 -17.0 agrobacterium chromosomal virulence protein B compare
Atu4617 -5.8 -11.9 dTDP-D-glucose-4,6-dehydratase compare
Atu2379 -5.8 -9.7 phosphomannomutase compare
Atu3311 -5.7 -15.7 phosphomannose isomerase compare
Atu1021 -5.6 -3.5 outer membrane protein compare
Atu0039 -5.6 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3353 -5.6 -10.0 mannose-1-phosphate guanylyltransferase compare
Atu0602 -5.3 -9.5 glutamine synthetase compare
Atu0041 -5.2 -3.1 glutamine amidotransferase compare
Atu4615 -5.2 -12.0 glucose-1-phosphate thymidylyltransferase compare
Atu0421 -4.9 -1.5 ABC transporter, membrane spanning protein compare
Atu2684 -4.9 -2.5 hypothetical protein compare
Atu1030 -4.8 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4618 -4.7 -13.0 dTDP-rhamnose-3,5-epimerase compare
Atu0659 -4.7 -5.9 NTP pyrophosphohydrolase, MutT family compare
Atu0434 -4.5 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0979 -4.5 -8.7 two component sensor kinase compare
Atu4613 -4.4 -16.5 glycosyltransferase compare
Atu0030 -4.4 -1.9 phosphocarrier protein HPr compare
Atu0971 -4.3 -4.2 two component sensor kinase compare
Atu0422 -4.2 -2.1 ABC transporter, membrane spanning protein compare
Atu0678 -4.2 -7.8 histidyl-tRNA synthetase compare
Atu0043 -3.9 -4.8 imidazoleglycerol-phosphate dehydratase compare
Atu2728 -3.9 -3.8 beta (1-->2) glucan export ATP-binding protein compare
Atu4166 -3.7 -2.7 UDP-glucose 4-epimerase compare
Atu0999 -3.6 -2.5 magnesium transport protein compare
Atu0679 -3.6 -8.2 ATP phosphoribosyltransferase compare
Atu1644 -3.6 -5.1 hypothetical protein compare
Atu0537 -3.5 -9.9 histidinol dehydrogenase compare
Atu1470 -3.5 -1.5 Camphor resistance protein compare
Atu3598 -3.5 -2.3 thiol:disulfide interchange protein compare
Atu4610 -3.3 -12.6 sugar nucleotide epimerase/dehydratase compare
Atu6098 -3.3 -1.4 transcriptional regulator, HTH family compare
Atu1646 -3.2 -7.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0601 -3.2 -8.2 oxidoreductase compare
Atu0141 -3.2 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu1750 -3.1 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1645 -3.1 -9.0 ABC transporter, substrate binding protein compare
Atu0038 -3.1 -5.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2521 -3.1 -15.9 Protein regulated by acid pH compare
Atu3730 -3.0 -2.5 hypothetical protein compare
Atu0876 -3.0 -2.4 superoxide dismutase compare
Atu4217 -2.9 -2.1 TetR family transcriptional regulator compare
Atu4616 -2.9 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu2832 -2.8 -5.9 tRNA modification GTPase compare
Atu8095 -2.8 -7.8 hypothetical protein compare
Atu0977 -2.7 -3.9 serine protease DO-like protease compare
Atu3908 -2.7 -12.5 GntR family transcriptional regulator compare
Atu2017 -2.7 -1.6 hypothetical protein compare
Atu1647 -2.7 -11.4 ABC transporter, membrane spanning protein compare
Atu4144 -2.7 -1.6 hypothetical protein compare
Atu2439 -2.7 -1.6 hypothetical protein compare
Atu2831 -2.6 -6.8 glucose inhibited division protein A compare
Atu0769 -2.6 -1.6 protoheme IX farnesyltransferase compare
Atu2125 -2.6 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu3885 -2.5 -8.3 inositol monophosphatase compare
Atu2787 -2.5 -1.5 hypothetical protein compare
Atu3739 -2.5 -4.2 phosphoglycerate kinase compare
Atu3706 -2.5 -8.5 D-3-phosphoglycerate dehydrogenase compare
Atu0190 -2.5 -6.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0368 -2.5 -4.3 tRNA pseudouridine synthase I compare
Atu0188 -2.5 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu3727 -2.4 -4.8 hypothetical protein compare
Atu4514 -2.3 -4.2 RpiR family transcriptional regulator compare
Atu3707 -2.3 -3.3 phosphoserine aminotransferase compare
Atu1619 -2.3 -3.2 protein-export membrane protein SECG compare
Atu2040 -2.3 -5.9 phosphoserine phosphatase compare
Atu1902 -2.3 -5.3 transketolase compare
Atu0912 -2.2 -0.9 Na+/H+ antiporter compare
Atu0040 -2.1 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1219 -2.1 -1.2 hypothetical protein compare
Atu2585 -2.1 -7.1 hypothetical protein compare
Atu2289 -2.1 -12.1 anthranilate synthase component I and II compare
Atu0995 -2.1 -6.6 hypothetical protein compare
Atu0499 -2.0 -7.3 hypothetical protein compare
Atu4317 -2.0 -3.5 TetR family transcriptional regulator compare
Atu1904 -2.0 -3.4 transcriptional regulator compare
Atu3012 -2.0 -2.4 hypothetical protein compare
Atu4608 -2.0 -11.4 hypothetical protein compare
Atu5125 -2.0 -6.1 GntR family transcriptional regulator compare
Atu3732 -2.0 -9.9 hemolysin compare
Atu3634 -2.0 -4.2 penicillin-binding protein dacf precursor compare
Atu0926 -2.0 -4.2 hypothetical protein compare
Atu1163 -1.9 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2555 -1.9 -3.8 L-lysine 2,3-aminomutase compare
Atu3910 -1.9 -2.9 LamB/YcsF family protein compare
Atu3763 -1.9 -1.1 hypothetical protein compare
Atu2207 -1.9 -4.2 two component sensor kinase compare
Atu2821 -1.9 -6.7 transcriptional regulator, GntR family compare
Atu3469 -1.9 -4.1 phosphoglyceromutase compare
Atu4609 -1.9 -8.5 glycosyltransferase compare
Atu2052 -1.9 -6.2 hypothetical protein compare
Atu0809 -1.8 -2.0 hypothetical protein compare
Atu0099 -1.8 -7.3 prephenate dehydratase compare
Atu1359 -1.8 -1.0 dnaK deletion suppressor protein compare
Atu2274 -1.7 -7.3 cation efflux system protein compare
Atu0153 -1.7 -4.0 transcriptional regulator, Fur family compare
Atu2200 -1.7 -2.1 cold shock protein compare
Atu2583 -1.7 -12.2 glycosyltransferase compare
Atu0331 -1.7 -3.3 sigma-54 modulation protein compare
Atu1803 -1.7 -4.2 cold shock protein compare
Atu2592 -1.7 -8.9 hypothetical protein compare
Atu1588 -1.6 -7.1 homoserine dehydrogenase compare
Atu0029 -1.6 -6.0 S-adenosylhomocysteine hydrolase compare
Atu0189 -1.6 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0051 -1.6 -6.1 two component sensor kinase compare
Atu2577 -1.6 -12.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1300 -1.6 -7.6 MFS permease compare
Atu4149 -1.6 -8.9 UDP-glucose 6-dehydrogenase compare
Atu2591 -1.6 -7.8 glucosyltransferase compare
Atu1327 -1.5 -2.5 NADH-ubiquinone oxidoreductase compare
Atu0498 -1.5 -5.1 hypothetical protein compare
Atu0361 -1.5 -2.8 transcriptional regulator compare
Atu2590 -1.5 -6.4 hypothetical protein compare
Atu1774 -1.5 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu0142 -1.5 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu4502 -1.5 -6.1 cobalamin synthesis protein compare
Atu1793 -1.5 -7.2 phosphatidylcholine synthase compare
Atu6114 -1.5 -1.9 hypothetical protein compare
Atu3219 -1.5 -9.1 dihydroxy-acid dehydratase compare
Atu3517 -1.5 -3.3 acetyltransferase compare
Atu1980 -1.5 -2.2 hypothetical protein compare
Atu1076 -1.5 -2.9 colicin V production protein compare
Atu4711 -1.5 -4.1 two component sensor kinase compare
Atu0050 -1.5 -4.6 two component response regulator compare
Atu2036 -1.5 -8.1 acetolactate synthase III, large subunit compare
Atu2554 -1.5 -2.3 lysyl-tRNA synthetase compare
Atu2245 -1.4 -7.4 Na+/Pi-cotransporter compare
Atu2790 -1.4 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu1364 -1.4 -4.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3779 -1.4 -6.5 lytic murein transglycosylase compare
Atu2814 -1.4 -7.3 zinc-binding dehydrogenase compare
Atu0184 -1.4 -2.5 glucokinase compare
Atu1705 -1.4 -3.1 SEC-independent protein translocase protein compare
Atu2123 -1.4 -4.3 methylenetetrahydrofolate reductase compare
Atu4323 -1.4 -5.9 ribitol 2-dehydrogenase compare
Atu1238 -1.3 -6.9 polysaccharide export protein compare
Atu2582 -1.3 -7.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1028 -1.3 -0.9 hypothetical protein compare
Atu4148 -1.3 -6.8 UDP-glucuronic acid epimerase compare
Atu4773 -1.3 -1.7 two component response regulator compare
Atu2640 -1.3 -3.8 hypothetical protein compare
Atu1677 -1.3 -2.5 queuine tRNA-ribosyltransferase compare
Atu0923 -1.3 -5.2 hypothetical protein compare
Atu0931 -1.3 -6.8 penicillin binding protein compare
Atu4888 -1.3 -6.2 hypothetical protein compare
Atu8138 -1.3 -1.6 hypothetical protein compare
Atu1285 -1.3 -4.6 metal dependent hydrolase compare
Atu3697 -1.3 -4.1 ATP-dependent protease LA 2 compare
Atu5007 -1.3 -5.7 santhopine-responsive transcriptional repressor compare
Atu2801 -1.2 -3.8 precorrin-2 C20 methyltransferase compare
Atu1810 -1.2 -0.7 hypothetical protein compare
Atu3468 -1.2 -0.7 hypothetical protein compare
Atu4873 -1.2 -4.2 TetR family transcriptional regulator compare
Atu3780 -1.2 -5.0 hypothetical protein compare
Atu2584 -1.2 -5.4 hypothetical protein compare
Atu4635 -1.2 -3.7 hypothetical protein compare
Atu0149 -1.2 -2.5 enoyl-(acyl-carrier-protein) reductase compare
Atu2057 -1.2 -1.5 DNA helicase II compare
Atu4139 -1.2 -2.0 hypothetical protein compare
Atu3183 -1.2 -0.8 hypothetical protein compare
Atu2304 -1.2 -5.4 bacteroid development protein compare
Atu2808 -1.2 -5.2 cobyric acid synthase compare
Atu2113 -1.2 -2.2 N-acetylmuramoyl-L-alanine amidase compare
Atu1127 -1.2 -1.6 molybdopterin converting factor small subunit compare
Atu1056 -1.2 -3.3 hypothetical protein compare
Atu1131 -1.2 -4.9 outer membrane protein compare
Atu2464 -1.2 -2.6 formyltetrahydrofolate deformylase compare
Atu2824 -1.2 -4.3 hypothetical protein compare
Atu1099 -1.1 -3.0 hypothetical protein compare
Atu2237 -1.1 -3.3 cytochrome c1 compare
Atu2685 -1.1 -6.4 aconitate hydratase compare
Atu3008 -1.1 -0.9 hypothetical protein compare
Atu3249 -1.1 -4.7 septum formation inhibitor compare
Atu2807 -1.1 -5.3 cob(I)alamin adenosyltransferase compare
Atu0086 -1.1 -0.9 ribosome-binding factor A compare
Atu4890 -1.1 -2.0 IS426 transposase compare
Atu2730 -1.1 -6.9 beta (1-->2) glucan biosynthesis protein compare
Atu3010 -1.1 -6.1 hypothetical protein compare
Atu1688 -1.1 -3.1 indole-3-glycerol-phosphate synthase compare
Atu3018 -1.1 -3.2 hypothetical protein compare
Atu4892 -1.1 -7.4 hypothetical protein compare
Atu3248 -1.1 -4.6 cell division inhibitor compare
Atu8118 -1.1 -3.3 putative universal stress protein compare
Atu0388 -1.1 -6.2 two component sensor kinase compare
Atu4173 -1.1 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu3777 -1.0 -4.6 hypothetical protein compare
Atu0017 -1.0 -2.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1667 -1.0 -1.4 hypothetical protein compare
Atu1495 -1.0 -2.1 hypothetical protein compare
Atu1236 -1.0 -4.2 polysaccharide biosynthesis glycosyltransferase compare
Atu1683 -1.0 -1.6 hypothetical protein compare
Atu3613 -1.0 -4.0 hypothetical protein compare
Atu4897 -1.0 -1.6 hypothetical protein compare
Atu0357 -1.0 -4.1 phosphate starvation inducible protein compare
Atu0479 -1.0 -3.9 ABC transporter, substrate binding protein (amino acid) compare


Specific Phenotypes

For 9 genes in this experiment

For in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms