Experiment set15IT026 for Agrobacterium fabrum C58

Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

Group: in planta
Media: Maize_7dpi + Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Culturing: Agro_ML11, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 10/20/22

Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms

SEED Subsystems

Subsystem	#Specific
Bacterial RNA-metabolizing Zn-dependent hydrolases	1
L-fucose utilization temp	1
Phosphate metabolism	1
Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
ribitol degradation I	2	2	1
L-fucose degradation II	5	2	1
D-galacturonate degradation IV	5	2	1
L-fucose degradation III	8	5	1
superpathway of microbial D-galacturonate and D-glucuronate degradation	31	22	1
superpathway of pentose and pentitol degradation	42	16	1