Experiment set15IT024 for Agrobacterium fabrum C58

Compare to:

Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2522 -7.9 -7.7 agrobacterium chromosomal virulence protein B compare
Atu3544 -7.3 -8.7 arsenical pump membrane protein compare
Atu0978 -7.0 -4.8 two component response regulator compare
Atu2183 -6.5 -4.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0189 -6.4 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0602 -6.3 -4.4 glutamine synthetase compare
Atu0039 -5.5 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu1021 -5.4 -2.8 outer membrane protein compare
Atu4617 -5.1 -12.3 dTDP-D-glucose-4,6-dehydratase compare
Atu3353 -5.1 -10.0 mannose-1-phosphate guanylyltransferase compare
Atu3730 -4.9 -2.2 hypothetical protein compare
Atu0421 -4.9 -1.3 ABC transporter, membrane spanning protein compare
Atu2379 -4.8 -11.3 phosphomannomutase compare
Atu0537 -4.8 -7.4 histidinol dehydrogenase compare
Atu4166 -4.8 -1.8 UDP-glucose 4-epimerase compare
Atu4615 -4.8 -11.1 glucose-1-phosphate thymidylyltransferase compare
Atu0977 -4.8 -4.4 serine protease DO-like protease compare
Atu3311 -4.7 -12.5 phosphomannose isomerase compare
Atu2684 -4.7 -2.1 hypothetical protein compare
Atu0601 -4.6 -10.2 oxidoreductase compare
Atu1030 -4.5 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0679 -4.4 -8.0 ATP phosphoribosyltransferase compare
Atu4618 -4.4 -12.1 dTDP-rhamnose-3,5-epimerase compare
Atu0188 -4.3 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0971 -4.3 -3.0 two component sensor kinase compare
Atu4616 -4.3 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu4614 -4.3 -7.1 glycosyltransferase compare
Atu1359 -4.2 -1.1 dnaK deletion suppressor protein compare
Atu0659 -4.1 -4.8 NTP pyrophosphohydrolase, MutT family compare
Atu0043 -4.1 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu0678 -4.0 -7.8 histidyl-tRNA synthetase compare
Atu4613 -3.7 -12.5 glycosyltransferase compare
Atu0979 -3.7 -7.2 two component sensor kinase compare
Atu1750 -3.6 -3.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu2521 -3.6 -17.0 Protein regulated by acid pH compare
Atu0038 -3.5 -6.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -3.5 -1.6 phosphocarrier protein HPr compare
Atu8191 -3.5 -1.2 hypothetical protein compare
Atu0041 -3.5 -3.2 glutamine amidotransferase compare
Atu0999 -3.4 -2.4 magnesium transport protein compare
Atu1470 -3.4 -1.3 Camphor resistance protein compare
Atu2728 -3.3 -4.9 beta (1-->2) glucan export ATP-binding protein compare
Atu3598 -3.2 -1.8 thiol:disulfide interchange protein compare
Atu2439 -3.1 -1.1 hypothetical protein compare
Atu1644 -3.1 -3.9 hypothetical protein compare
Atu0953 -3.0 -1.1 hypothetical protein compare
Atu0422 -3.0 -1.5 ABC transporter, membrane spanning protein compare
Atu3008 -2.9 -1.1 hypothetical protein compare
Atu8162 -2.8 -1.5 hypothetical protein compare
Atu1354 -2.8 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2274 -2.8 -7.2 cation efflux system protein compare
Atu3461 -2.7 -2.5 GntR family transcriptional regulator compare
Atu1646 -2.7 -5.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu8095 -2.6 -6.0 hypothetical protein compare
Atu4610 -2.5 -8.4 sugar nucleotide epimerase/dehydratase compare
Atu0769 -2.5 -1.3 protoheme IX farnesyltransferase compare
Atu0026 -2.5 -1.1 hypothetical protein compare
Atu3885 -2.4 -5.6 inositol monophosphatase compare
Atu1645 -2.4 -7.4 ABC transporter, substrate binding protein compare
Atu3469 -2.4 -3.1 phosphoglyceromutase compare
Atu2289 -2.3 -9.8 anthranilate synthase component I and II compare
Atu2832 -2.3 -3.2 tRNA modification GTPase compare
Atu0051 -2.3 -6.0 two component sensor kinase compare
Atu3345 -2.3 -2.4 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu6098 -2.3 -1.0 transcriptional regulator, HTH family compare
Atu3706 -2.3 -6.7 D-3-phosphoglycerate dehydrogenase compare
Atu4711 -2.2 -8.6 two component sensor kinase compare
Atu1647 -2.2 -7.8 ABC transporter, membrane spanning protein compare
Atu3908 -2.2 -8.1 GntR family transcriptional regulator compare
Atu0912 -2.2 -0.8 Na+/H+ antiporter compare
Atu4072 -2.1 -1.7 nodulation protein N compare
Atu1566 -2.1 -1.1 hypothetical protein compare
Atu4686 -2.1 -1.3 hypothetical protein compare
Atu1774 -2.1 -5.6 ABC transporter, substrate binding protein (peptide) compare
Atu5430 -2.1 -1.1 hypothetical protein compare
Atu1417 -2.0 -5.9 enoyl-CoA hydratase compare
Atu2036 -2.0 -10.5 acetolactate synthase III, large subunit compare
Atu1588 -2.0 -7.5 homoserine dehydrogenase compare
Atu1163 -2.0 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1364 -1.9 -4.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0040 -1.9 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0368 -1.9 -4.3 tRNA pseudouridine synthase I compare
Atu0050 -1.9 -5.1 two component response regulator compare
Atu0099 -1.9 -8.5 prephenate dehydratase compare
Atu0105 -1.8 -3.5 hypothetical protein compare
Atu3009 -1.8 -1.1 exopolysaccharide production protein compare
Atu4608 -1.8 -7.9 hypothetical protein compare
Atu2585 -1.8 -6.7 hypothetical protein compare
Atu0319 -1.8 -1.1 ubiquinone biosynthesis protein compare
Atu1688 -1.8 -4.4 indole-3-glycerol-phosphate synthase compare
Atu1904 -1.8 -3.4 transcriptional regulator compare
Atu2207 -1.8 -3.7 two component sensor kinase compare
Atu0499 -1.7 -5.6 hypothetical protein compare
Atu0925 -1.7 -2.2 hypothetical protein compare
Atu4148 -1.7 -6.8 UDP-glucuronic acid epimerase compare
Atu0190 -1.7 -4.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2790 -1.7 -2.0 3-isopropylmalate dehydratase, small subunit compare
Atu3763 -1.7 -0.8 hypothetical protein compare
Atu2555 -1.7 -3.1 L-lysine 2,3-aminomutase compare
Atu1076 -1.7 -2.4 colicin V production protein compare
Atu4893 -1.6 -5.8 hypothetical protein compare
Atu3739 -1.6 -2.8 phosphoglycerate kinase compare
Atu2831 -1.6 -3.4 glucose inhibited division protein A compare
Atu1803 -1.6 -4.5 cold shock protein compare
Atu2040 -1.6 -4.1 phosphoserine phosphatase compare
Atu3017 -1.6 -1.0 phosphoglyceromutase compare
Atu2583 -1.6 -9.2 glycosyltransferase compare
Atu6189 -1.6 -1.2 protein secretion chaperone compare
Atu6131 -1.6 -4.3 TraR Antiactivator compare
Atu0777 -1.6 -1.0 hypothetical protein compare
Atu0153 -1.6 -3.1 transcriptional regulator, Fur family compare
Atu3486 -1.6 -2.3 DeoR family transcriptional regulator compare
Atu3183 -1.6 -0.7 hypothetical protein compare
Atu1238 -1.6 -5.6 polysaccharide export protein compare
Atu8054 -1.6 -0.9 hypothetical protein compare
Atu0339 -1.6 -2.1 hypothetical protein compare
Atu3006 -1.5 -4.5 hypothetical protein compare
Atu2582 -1.5 -5.5 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3727 -1.5 -2.5 hypothetical protein compare
Atu1902 -1.5 -3.8 transketolase compare
Atu1619 -1.5 -2.4 protein-export membrane protein SECG compare
Atu2590 -1.5 -9.0 hypothetical protein compare
Atu3613 -1.5 -4.2 hypothetical protein compare
Atu4317 -1.5 -1.2 TetR family transcriptional regulator compare
Atu4609 -1.5 -5.7 glycosyltransferase compare
Atu1677 -1.5 -2.8 queuine tRNA-ribosyltransferase compare
Atu2083 -1.5 -3.3 DNA repair protein RecN compare
Atu2592 -1.5 -5.8 hypothetical protein compare
Atu1874 -1.4 -2.3 RecA protein compare
Atu1189 -1.4 -2.6 hypothetical protein compare
Atu1439 -1.4 -1.7 hypothetical protein compare
Atu3910 -1.4 -4.1 LamB/YcsF family protein compare
Atu0876 -1.4 -1.0 superoxide dismutase compare
Atu1131 -1.4 -4.3 outer membrane protein compare
Atu2591 -1.4 -6.8 glucosyltransferase compare
Atu2052 -1.4 -5.3 hypothetical protein compare
Atu4149 -1.4 -8.0 UDP-glucose 6-dehydrogenase compare
Atu1760 -1.4 -1.1 hypothetical protein compare
Atu3732 -1.4 -6.2 hemolysin compare
Atu0498 -1.4 -6.3 hypothetical protein compare
Atu3407 -1.4 -6.2 hypothetical protein compare
Atu0388 -1.4 -7.9 two component sensor kinase compare
Atu1793 -1.4 -4.6 phosphatidylcholine synthase compare
Atu8036 -1.4 -1.6 protein YBGT-like protein compare
Atu3697 -1.4 -4.0 ATP-dependent protease LA 2 compare
Atu1099 -1.4 -3.3 hypothetical protein compare
Atu3759 -1.4 -1.2 hypothetical protein compare
Atu0784 -1.4 -2.2 hypothetical protein compare
Atu8130 -1.3 -5.8 hypothetical protein compare
Atu0479 -1.3 -5.6 ABC transporter, substrate binding protein (amino acid) compare
Atu0432 -1.3 -4.4 O-succinylhomoserine sulfhydrylase compare
Atu2113 -1.3 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu8088 -1.3 -1.6 hypothetical protein compare
Atu2824 -1.3 -3.0 hypothetical protein compare
Atu1687 -1.3 -4.6 anthranilate phosphoribosyltransferase compare
Atu0017 -1.3 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3015 -1.3 -5.8 hypothetical protein compare
Atu3750 -1.3 -1.4 thiamine-phosphate pyrophosphorylase compare
Atu3779 -1.3 -6.2 lytic murein transglycosylase compare
Atu4540 -1.3 -2.3 protocatechuate 3,4-dioxygenase subunit beta compare
Atu1300 -1.2 -5.3 MFS permease compare
Atu0361 -1.2 -2.1 transcriptional regulator compare
Atu1062 -1.2 -1.3 phosphatidylserine synthase compare
Atu2577 -1.2 -8.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2554 -1.2 -1.4 lysyl-tRNA synthetase compare
Atu4892 -1.2 -7.3 hypothetical protein compare
Atu0107 -1.2 -1.4 hypothetical protein compare
Atu2125 -1.2 -0.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu4040 -1.2 -2.5 hypothetical protein compare
Atu0142 -1.2 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu3219 -1.2 -5.4 dihydroxy-acid dehydratase compare
Atu2821 -1.1 -2.6 transcriptional regulator, GntR family compare
Atu0926 -1.1 -3.8 hypothetical protein compare
Atu3014 -1.1 -1.6 hypothetical protein compare
Atu4635 -1.1 -2.3 hypothetical protein compare
Atu3010 -1.1 -5.3 hypothetical protein compare
Atu3603 -1.1 -2.0 two component response regulator compare
Atu4502 -1.1 -3.1 cobalamin synthesis protein compare
Atu4514 -1.1 -3.5 RpiR family transcriptional regulator compare
Atu0723 -1.1 -1.4 FAD dependent oxidoreductase compare
Atu0908 -1.1 -2.0 transcriptional regulator compare
Atu5107 -1.1 -2.4 hypothetical protein compare
Atu0931 -1.1 -4.7 penicillin binding protein compare
Atu2730 -1.1 -6.7 beta (1-->2) glucan biosynthesis protein compare
Atu2801 -1.1 -2.2 precorrin-2 C20 methyltransferase compare
Atu3777 -1.1 -3.9 hypothetical protein compare
Atu1810 -1.1 -0.7 hypothetical protein compare
Atu3517 -1.1 -2.5 acetyltransferase compare
Atu1495 -1.1 -1.7 hypothetical protein compare
Atu4469 -1.1 -1.8 iron ABC transporter permease compare
Atu4053 -1.1 -0.9 succinoglycan biosynthesis protein compare
Atu3623 -1.1 -2.1 DnaJ family molecular chaperone compare
Atu0331 -1.1 -2.0 sigma-54 modulation protein compare
Atu0995 -1.0 -3.8 hypothetical protein compare
Atu2376 -1.0 -1.2 hypothetical protein compare
Atu0755 -1.0 -1.7 hypothetical protein compare
Atu1754 -1.0 -0.9 hypothetical protein compare
Atu3013 -1.0 -2.9 hypothetical protein compare
Atu3886 -1.0 -5.2 lysophospholipase compare
Atu3120 -1.0 -0.6 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms