Experiment set15IT020 for Pseudomonas simiae WCS417

Compare to:

Taped volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PS417_11705 -5.5 -10.4 cyclic peptide transporter compare
PS417_27795 -5.1 -1.4 orotate phosphoribosyltransferase compare
PS417_23545 -4.7 -3.7 gamma-glutamyl kinase compare
PS417_22565 -4.1 -1.1 formyltetrahydrofolate deformylase compare
PS417_27865 -4.1 -3.3 LysR family transcriptional regulator compare
PS417_26730 -3.9 -1.5 pyrroline-5-carboxylate reductase compare
PS417_24745 -3.8 -6.0 gamma-glutamyl phosphate reductase compare
PS417_06245 -3.7 -2.5 zinc metallopeptidase RseP compare
PS417_27195 -3.6 -1.3 N-acetylglutamate synthase compare
PS417_03560 -3.5 -1.8 GTP-binding protein compare
PS417_03260 -3.3 -1.1 5S ribosomal RNA compare
PS417_10985 -3.2 -1.2 NADH:flavin oxidoreductase compare
PS417_22450 -3.2 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_02280 -3.2 -2.6 GlcNAc-PI de-N-acetylase compare
PS417_27870 -3.1 -6.5 ATP-dependent DNA helicase RecG compare
PS417_20985 -2.9 -1.9 porin compare
PS417_04650 -2.6 -1.0 D-alanine--D-alanine ligase compare
PS417_01580 -2.6 -1.9 imidazole glycerol phosphate synthase compare
PS417_27800 -2.6 -1.8 exodeoxyribonuclease III compare
PS417_08125 -2.6 -0.7 prephenate dehydratase compare
PS417_06375 -2.5 -1.1 deoxycytidine triphosphate deaminase compare
PS417_24500 -2.4 -3.5 DEAD/DEAH box helicase compare
PS417_08135 -2.3 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13455 -2.3 -1.6 alkaline proteinase inhibitor compare
PS417_23025 -2.3 -5.9 murein transglycosylase compare
PS417_06540 -2.2 -1.8 membrane protein compare
PS417_22840 -2.2 -1.8 tRNA-Met compare
PS417_16490 -2.2 -1.9 cell division protein FtsK compare
PS417_07170 -2.2 -4.8 hypothetical protein compare
PS417_04380 -2.1 -0.9 ABC transporter permease compare
PS417_23770 -2.1 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_15805 -2.0 -1.8 transporter compare
PS417_17215 -2.0 -2.7 peptidylprolyl isomerase compare
PS417_18310 -2.0 -1.1 hypothetical protein compare
PS417_13510 -2.0 -1.3 polyketide cyclase compare
PS417_08155 -2.0 -1.6 integration host factor subunit beta compare
PS417_14980 -2.0 -1.1 universal stress protein UspA compare
PS417_04365 -2.0 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_16555 -1.9 -2.1 cupin compare
PS417_23805 -1.9 -4.9 acetolactate synthase 3 regulatory subunit compare
PS417_02270 -1.8 -3.5 carbamoyltransferase compare
PS417_02415 -1.8 -3.6 phosphoserine phosphatase compare
PS417_19955 -1.7 -2.0 hypothetical protein compare
PS417_05985 -1.7 -2.4 chemotaxis protein CheY compare
PS417_02630 -1.7 -2.8 NAD synthetase compare
PS417_08410 -1.7 -2.7 hypothetical protein compare
PS417_19200 -1.7 -2.4 fumarate hydratase compare
PS417_02255 -1.7 -2.2 lipopolysaccharide kinase compare
PS417_02975 -1.6 -2.2 3-dehydroquinate dehydratase compare
PS417_21630 -1.6 -1.9 magnesium transporter compare
PS417_17945 -1.6 -0.8 hypothetical protein compare
PS417_25225 -1.5 -1.5 MFS transporter compare
PS417_23390 -1.5 -5.0 ubiquinol oxidase subunit II compare
PS417_12390 -1.5 -1.7 hypothetical protein compare
PS417_03080 -1.5 -2.4 hypothetical protein compare
PS417_22445 -1.5 -3.7 ATP-dependent DNA helicase RuvB compare
PS417_06145 -1.4 -1.0 hypothetical protein compare
PS417_02805 -1.4 -1.4 urease subunit gamma compare
PS417_00590 -1.4 -2.3 5S ribosomal RNA compare
PS417_24460 -1.4 -1.6 hypothetical protein compare
PS417_15285 -1.4 -1.1 type VI secretion protein compare
PS417_06680 -1.4 -4.9 nuclease PIN compare
PS417_07140 -1.4 -4.0 peptidase M48 compare
PS417_05830 -1.4 -2.0 hypothetical protein compare
PS417_05820 -1.4 -2.2 recombinase RecX compare
PS417_21480 -1.4 -1.2 23S rRNA pseudouridylate synthase compare
PS417_03705 -1.3 -2.2 2-alkenal reductase compare
PS417_13895 -1.3 -2.4 chemotaxis protein CheB compare
PS417_27005 -1.3 -0.9 membrane protein compare
PS417_28350 -1.3 -4.3 fatty acid methyltransferase compare
PS417_00220 -1.3 -1.5 hypothetical protein compare
PS417_28225 -1.3 -1.1 hypothetical protein compare
PS417_01560 -1.3 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_15110 -1.3 -3.3 protein BatD compare
PS417_15095 -1.3 -1.5 hypothetical protein compare
PS417_18425 -1.2 -1.5 sporulation protein compare
PS417_15105 -1.2 -3.8 membrane protein compare
PS417_10480 -1.2 -1.9 glutathione S-transferase compare
PS417_24705 -1.2 -2.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_23385 -1.2 -4.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_14580 -1.2 -3.2 saccharopine dehydrogenase compare
PS417_04385 -1.2 -2.0 organic solvent ABC transporter substrate-binding protein compare
PS417_06530 -1.2 -2.0 membrane protein compare
PS417_04375 -1.2 -1.4 ABC transporter ATP-binding protein compare
PS417_21850 -1.2 -1.2 LysR family transcriptional regulator compare
PS417_19350 -1.2 -3.2 GTP cyclohydrolase compare
PS417_02485 -1.2 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00195 -1.2 -1.8 hypothetical protein compare
PS417_04500 -1.2 -1.0 hypothetical protein compare
PS417_19675 -1.2 -2.3 chemotaxis protein CheY compare
PS417_01565 -1.2 -3.8 imidazole glycerol phosphate synthase compare
PS417_20160 -1.2 -2.0 cysteine synthase compare
PS417_13735 -1.1 -1.1 hypothetical protein compare
PS417_21210 -1.1 -2.3 amidotransferase compare
PS417_05120 -1.1 -1.3 RNA polymerase subunit sigma-24 compare
PS417_00975 -1.1 -1.2 hypothetical protein compare
PS417_06745 -1.1 -1.5 polysaccharide deacetylase compare
PS417_26900 -1.1 -1.3 L-cystine transporter tcyP compare
PS417_19755 -1.1 -1.4 flagellar motor switch protein FliM compare
PS417_04305 -1.1 -1.1 aspartate ammonia-lyase compare
PS417_21125 -1.1 -3.1 phosphoadenosine phosphosulfate reductase compare
PS417_14245 -1.1 -2.0 hypothetical protein compare
PS417_01605 -1.1 -0.8 phosphoglycerate mutase compare
PS417_04275 -1.1 -5.9 hypothetical protein compare
PS417_05695 -1.1 -2.8 transcriptional regulator compare
PS417_08540 -1.1 -1.6 RNA helicase compare
PS417_15765 -1.1 -3.1 molybdopterin biosynthesis protein B compare
PS417_09600 -1.1 -3.7 glycosyl transferase family 1 compare
PS417_20785 -1.0 -2.1 transcriptional regulator compare
PS417_26370 -1.0 -2.4 RNA helicase compare
PS417_21275 -1.0 -5.6 GntR family transcriptional regulator compare
PS417_20705 -1.0 -1.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_08200 -1.0 -1.7 hypothetical protein compare
PS417_18105 -1.0 -1.0 iron-dicitrate transporter substrate-binding subunit compare
PS417_01735 -1.0 -1.6 ABC transporter permease compare
PS417_07710 -1.0 -3.4 membrane protein compare
PS417_17925 -1.0 -1.5 acyl-CoA dehydrogenase compare
PS417_23105 -1.0 -1.2 hypothetical protein compare
PS417_11570 -1.0 -2.1 ABC transporter permease compare
PS417_19835 -1.0 -1.1 flagellar biosynthesis protein FliS compare
PS417_17125 -1.0 -2.1 transcriptional regulator compare
PS417_15135 -1.0 -0.9 hypothetical protein compare
PS417_15540 -1.0 -0.8 NUDIX hydrolase compare
PS417_18800 -1.0 -1.6 hypothetical protein compare
PS417_13165 -1.0 -1.0 peroxidase compare
PS417_08190 -1.0 -6.2 membrane protein compare
PS417_00725 -1.0 -2.8 RND transporter compare
PS417_22575 -1.0 -4.3 exonuclease I compare
PS417_16495 -1.0 -2.3 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_11180 -1.0 -2.5 TetR family transcriptional regulator compare
PS417_19625 -1.0 -2.0 histidine kinase compare
PS417_02395 -1.0 -2.9 DNA topoisomerase IV subunit B compare
PS417_09035 -1.0 -2.2 hypothetical protein compare
PS417_18635 -1.0 -1.6 4-hydroxybenzoyl-CoA thioesterase compare
PS417_17840 -1.0 -1.4 betaine-aldehyde dehydrogenase compare
PS417_07120 -0.9 -2.4 RNA polymerase sigma-H factor compare
PS417_28145 -0.9 -1.6 AraC family transcriptional regulator compare
PS417_05235 -0.9 -1.4 peptidase inhibitor I42 compare
PS417_15090 -0.9 -1.5 hypothetical protein compare
PS417_01575 -0.9 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02950 -0.9 -1.6 tRNA-dihydrouridine synthase B compare
PS417_15085 -0.9 -2.0 ATPase AAA compare
PS417_27815 -0.9 -1.0 hypothetical protein compare
PS417_01435 -0.9 -0.7 hypothetical protein compare
PS417_27675 -0.9 -1.4 xanthine phosphoribosyltransferase compare
PS417_05865 -0.9 -1.5 hypothetical protein compare
PS417_19600 -0.9 -0.9 exonuclease compare
PS417_01160 -0.9 -2.5 hypothetical protein compare
PS417_11175 -0.9 -1.4 AraC family transcriptional regulator compare
PS417_22795 -0.9 -1.1 exclusion suppressor FxsA compare
PS417_15915 -0.9 -0.9 hypothetical protein compare
PS417_06200 -0.9 -3.0 protein-PII uridylyltransferase compare
PS417_15325 -0.9 -0.8 type VI secretion protein compare
PS417_02365 -0.9 -2.0 hypothetical protein compare
PS417_02555 -0.9 -5.6 exoribonuclease R compare
PS417_09085 -0.9 -1.0 hypothetical protein compare
PS417_17350 -0.9 -2.7 copper resistance protein CopD compare
PS417_16515 -0.9 -1.2 Clp protease ClpS compare
PS417_23680 -0.9 -4.2 AraC family transcriptional regulator compare
PS417_01920 -0.9 -0.7 ATP-dependent protease subunit HslV compare
PS417_08740 -0.9 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_00900 -0.9 -1.2 4-aminobutyrate aminotransferase compare
PS417_11530 -0.9 -1.9 amidase compare
PS417_13800 -0.9 -2.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_27425 -0.9 -3.6 exopolyphosphatase compare
PS417_13205 -0.9 -1.3 isochorismate-pyruvate lyase compare
PS417_12155 -0.8 -2.9 transporter compare
PS417_28525 -0.8 -2.5 RNA polymerase sigma factor compare
PS417_18260 -0.8 -2.1 TetR family transcriptional regulator compare
PS417_05815 -0.8 -2.3 recombinase RecA compare
PS417_18630 -0.8 -1.3 tRNA-dihydrouridine synthase C compare
PS417_23370 -0.8 -1.6 protoheme IX farnesyltransferase compare
PS417_08230 -0.8 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_10870 -0.8 -1.4 GABA permease compare
PS417_23855 -0.8 -1.0 ABC transporter substrate-binding protein compare
PS417_04475 -0.8 -2.3 hypothetical protein compare
PS417_14235 -0.8 -1.8 hypothetical protein compare
PS417_05785 -0.8 -1.9 tail protein compare
PS417_19655 -0.8 -2.2 chemotaxis protein CheW compare
PS417_17450 -0.8 -1.6 amino acid ABC transporter substrate-binding protein compare
PS417_07565 -0.8 -0.9 hypothetical protein compare
PS417_06780 -0.8 -1.4 TetR family transcriptional regulator compare
PS417_23810 -0.8 -3.6 acetolactate synthase 3 catalytic subunit compare
PS417_19590 -0.8 -1.7 enoyl-CoA hydratase compare
PS417_23915 -0.8 -1.5 pantoate--beta-alanine ligase compare
PS417_20055 -0.8 -1.8 cob(II)yrinic acid a,c-diamide reductase compare
PS417_05160 -0.8 -0.6 DNA polymerase III subunit chi compare
PS417_19065 -0.8 -0.6 monooxygenase compare
PS417_09210 -0.8 -0.6 TetR family transcriptional regulator compare
PS417_15005 -0.8 -1.6 hypothetical protein compare
PS417_01375 -0.8 -1.7 hypothetical protein compare
PS417_00180 -0.8 -1.1 tryptophan synthase subunit alpha compare
PS417_28080 -0.8 -5.4 phosphate ABC transporter permease compare
PS417_15895 -0.8 -1.7 iron dicitrate transport regulator FecR compare
PS417_05510 -0.8 -2.5 alpha/beta hydrolase compare
PS417_09585 -0.8 -3.0 acetyltransferase compare
PS417_00480 -0.8 -1.5 hypothetical protein compare
PS417_18420 -0.8 -1.8 deoxyribonuclease compare
PS417_25270 -0.8 -1.5 NrdR family transcriptional regulator compare
PS417_23605 -0.7 -2.2 permease DsdX compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction control experiments