Experiment set15IT020 for Agrobacterium fabrum C58

Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

Group: in planta
Media: Wheat_7dpi + Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Culturing: Agro_ML11, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 10/20/22

Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms

SEED Subsystems

Subsystem	#Specific
Biotin biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Benzoate degradation via hydroxylation
• Fluorobenzoate degradation
• Benzoate degradation via CoA ligation
• Biotin metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
benzoate degradation I (aerobic)	2	1	1
proline betaine degradation I	3	2	1
biotin biosynthesis from 8-amino-7-oxononanoate I	4	4	1
meta cleavage pathway of aromatic compounds	10	4	1
toluene degradation IV (aerobic) (via catechol)	13	5	1
biotin biosynthesis I	15	13	1
mandelate degradation to acetyl-CoA	18	8	1
superpathway of aerobic toluene degradation	30	12	1
superpathway of aromatic compound degradation via 3-oxoadipate	35	15	1
superpathway of aromatic compound degradation via 2-hydroxypentadienoate	42	11	1