Experiment set15IT019 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PS417_24745 -4.2 -5.7 gamma-glutamyl phosphate reductase compare
PS417_22565 -4.2 -1.1 formyltetrahydrofolate deformylase compare
PS417_02280 -4.1 -2.6 GlcNAc-PI de-N-acetylase compare
PS417_27865 -4.0 -4.8 LysR family transcriptional regulator compare
PS417_23545 -3.8 -3.1 gamma-glutamyl kinase compare
PS417_21630 -3.6 -2.4 magnesium transporter compare
PS417_27870 -3.6 -4.0 ATP-dependent DNA helicase RecG compare
PS417_06375 -3.3 -1.2 deoxycytidine triphosphate deaminase compare
PS417_11705 -3.0 -9.3 cyclic peptide transporter compare
PS417_26990 -2.9 -1.0 RNA pyrophosphohydrolase compare
PS417_03560 -2.8 -1.8 GTP-binding protein compare
PS417_04650 -2.7 -1.0 D-alanine--D-alanine ligase compare
PS417_03260 -2.6 -1.5 5S ribosomal RNA compare
PS417_19350 -2.5 -4.9 GTP cyclohydrolase compare
PS417_15885 -2.3 -2.2 GCN5 family acetyltransferase compare
PS417_00370 -2.3 -1.3 hypothetical protein compare
PS417_20985 -2.2 -1.9 porin compare
PS417_05815 -2.2 -4.3 recombinase RecA compare
PS417_00180 -2.2 -2.4 tryptophan synthase subunit alpha compare
PS417_04380 -2.2 -0.9 ABC transporter permease compare
PS417_23770 -2.1 -2.3 exodeoxyribonuclease V subunit alpha compare
PS417_27795 -2.1 -1.2 orotate phosphoribosyltransferase compare
PS417_13510 -2.0 -1.3 polyketide cyclase compare
PS417_08135 -2.0 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00510 -2.0 -1.0 membrane protein compare
PS417_02975 -1.9 -3.6 3-dehydroquinate dehydratase compare
PS417_07170 -1.9 -4.6 hypothetical protein compare
PS417_01915 -1.9 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24500 -1.9 -2.9 DEAD/DEAH box helicase compare
PS417_27800 -1.7 -2.9 exodeoxyribonuclease III compare
PS417_04585 -1.7 -1.3 hypothetical protein compare
PS417_23380 -1.7 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_17610 -1.6 -1.4 AsnC family transcriptional regulator compare
PS417_23370 -1.6 -3.6 protoheme IX farnesyltransferase compare
PS417_17215 -1.6 -3.1 peptidylprolyl isomerase compare
PS417_18105 -1.6 -1.4 iron-dicitrate transporter substrate-binding subunit compare
PS417_01605 -1.5 -1.4 phosphoglycerate mutase compare
PS417_00085 -1.5 -2.7 16S rRNA methyltransferase compare
PS417_22520 -1.5 -1.7 histidine kinase compare
PS417_18310 -1.5 -1.3 hypothetical protein compare
PS417_02555 -1.5 -8.5 exoribonuclease R compare
PS417_04275 -1.5 -8.9 hypothetical protein compare
PS417_08155 -1.5 -1.2 integration host factor subunit beta compare
PS417_01095 -1.5 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_04220 -1.5 -1.2 4-carboxymuconolactone decarboxylase compare
PS417_23805 -1.5 -3.5 acetolactate synthase 3 regulatory subunit compare
PS417_26605 -1.4 -0.8 malonate decarboxylase subunit beta compare
PS417_08545 -1.4 -1.5 aromatic ring-opening dioxygenase LigB compare
PS417_21480 -1.4 -1.4 23S rRNA pseudouridylate synthase compare
PS417_22165 -1.4 -3.6 LysR family transcriptional regulator compare
PS417_21430 -1.4 -1.3 3-oxoacyl-ACP synthase compare
PS417_22840 -1.4 -1.5 tRNA-Met compare
PS417_24115 -1.4 -1.6 hypothetical protein compare
PS417_08410 -1.4 -1.7 hypothetical protein compare
PS417_27005 -1.4 -0.9 membrane protein compare
PS417_13145 -1.3 -1.1 50S ribosomal protein L21 compare
PS417_22050 -1.3 -3.1 ribonuclease BN compare
PS417_08200 -1.3 -2.6 hypothetical protein compare
PS417_09590 -1.3 -3.7 membrane protein compare
PS417_08245 -1.3 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21125 -1.3 -3.6 phosphoadenosine phosphosulfate reductase compare
PS417_18545 -1.3 -3.0 cell division protein compare
PS417_21065 -1.3 -1.6 3-methylitaconate isomerase compare
PS417_23810 -1.3 -6.2 acetolactate synthase 3 catalytic subunit compare
PS417_16195 -1.3 -0.9 AraC family transcriptional regulator compare
PS417_27195 -1.3 -1.1 N-acetylglutamate synthase compare
PS417_24620 -1.3 -1.4 hypothetical protein compare
PS417_01195 -1.3 -2.0 RNA-binding protein S4 compare
PS417_06680 -1.3 -4.2 nuclease PIN compare
PS417_02270 -1.3 -2.6 carbamoyltransferase compare
PS417_15110 -1.2 -3.8 protein BatD compare
PS417_17565 -1.2 -2.0 branched-chain amino acid aminotransferase compare
PS417_19600 -1.2 -1.0 exonuclease compare
PS417_21255 -1.2 -1.6 hypothetical protein compare
PS417_23390 -1.2 -5.8 ubiquinol oxidase subunit II compare
PS417_06335 -1.2 -1.9 S-formylglutathione hydrolase compare
PS417_07410 -1.2 -1.5 hypothetical protein compare
PS417_16555 -1.2 -1.3 cupin compare
PS417_08580 -1.2 -3.6 histidine kinase compare
PS417_02415 -1.2 -1.9 phosphoserine phosphatase compare
PS417_18425 -1.2 -1.5 sporulation protein compare
PS417_05695 -1.2 -2.5 transcriptional regulator compare
PS417_22060 -1.2 -0.7 hypothetical protein compare
PS417_15975 -1.2 -1.0 glutamate carboxypeptidase compare
PS417_10910 -1.2 -2.6 FAD-dependent oxidoreductase compare
PS417_08620 -1.2 -0.8 hypothetical protein compare
PS417_26370 -1.2 -2.9 RNA helicase compare
PS417_27425 -1.2 -4.9 exopolyphosphatase compare
PS417_22570 -1.2 -0.7 H-NS histone compare
PS417_05165 -1.2 -2.7 cytosol aminopeptidase compare
PS417_04365 -1.2 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01565 -1.1 -3.7 imidazole glycerol phosphate synthase compare
PS417_26530 -1.1 -0.8 hypothetical protein compare
PS417_25390 -1.1 -2.8 MFS transporter compare
PS417_03495 -1.1 -2.1 type III secretory protein EscS compare
PS417_23385 -1.1 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_01560 -1.1 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_18540 -1.1 -2.1 colicin V production CvpA compare
PS417_04500 -1.1 -0.9 hypothetical protein compare
PS417_24575 -1.1 -1.0 hypothetical protein compare
PS417_02995 -1.1 -2.7 NUDIX hydrolase compare
PS417_23025 -1.1 -3.2 murein transglycosylase compare
PS417_16855 -1.1 -1.4 cation:proton antiporter compare
PS417_22445 -1.1 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_02560 -1.1 -1.0 23S rRNA methyltransferase compare
PS417_13455 -1.1 -2.3 alkaline proteinase inhibitor compare
PS417_04915 -1.0 -1.4 glutamine ABC transporter ATP-binding protein compare
PS417_08335 -1.0 -1.3 hypothetical protein compare
PS417_08125 -1.0 -0.4 prephenate dehydratase compare
PS417_02740 -1.0 -0.9 LysR family transcriptional regulator compare
PS417_18755 -1.0 -1.5 CrtK compare
PS417_14175 -1.0 -2.7 ArsC family transcriptional regulator compare
PS417_06245 -1.0 -1.2 zinc metallopeptidase RseP compare
PS417_14805 -1.0 -1.3 AraC family transcriptional regulator compare
PS417_10655 -1.0 -2.5 LuxR family transcriptional regulator compare
PS417_05510 -1.0 -3.2 alpha/beta hydrolase compare
PS417_22775 -1.0 -3.5 histidine kinase compare
PS417_13245 -1.0 -2.2 saccharopine dehydrogenase compare
PS417_07120 -1.0 -3.7 RNA polymerase sigma-H factor compare
PS417_19665 -1.0 -2.8 flagellar motor protein MotD compare
PS417_08540 -1.0 -1.5 RNA helicase compare
PS417_17240 -1.0 -1.7 trigger factor compare
PS417_04090 -1.0 -2.6 hypothetical protein compare
PS417_00925 -1.0 -1.4 hypothetical protein compare
PS417_13165 -1.0 -1.2 peroxidase compare
PS417_17780 -1.0 -0.6 Ais protein compare
PS417_21625 -1.0 -0.8 DNA-binding protein compare
PS417_00160 -1.0 -1.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_06045 -0.9 -2.0 membrane protein compare
PS417_03455 -0.9 -0.8 type III secretion protein compare
PS417_06845 -0.9 -0.7 lipoprotein compare
PS417_13800 -0.9 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_10695 -0.9 -2.5 decarboxylase compare
PS417_14980 -0.9 -0.7 universal stress protein UspA compare
PS417_24765 -0.9 -3.2 membrane protein compare
PS417_26900 -0.9 -1.2 L-cystine transporter tcyP compare
PS417_12915 -0.9 -2.1 DNA-binding protein compare
PS417_01040 -0.9 -3.4 RND transporter compare
PS417_18920 -0.9 -1.3 hypothetical protein compare
PS417_15095 -0.9 -1.7 hypothetical protein compare
PS417_04290 -0.9 -2.2 hypothetical protein compare
PS417_19955 -0.9 -0.5 hypothetical protein compare
PS417_13580 -0.9 -1.3 AraC family transcriptional regulator compare
PS417_04590 -0.9 -2.5 methyltransferase compare
PS417_13180 -0.9 -2.1 AraC family transcriptional regulator compare
PS417_15100 -0.9 -1.5 BatB protein compare
PS417_04385 -0.9 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_02255 -0.9 -1.0 lipopolysaccharide kinase compare
PS417_19675 -0.9 -3.1 chemotaxis protein CheY compare
PS417_16775 -0.9 -1.5 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_17795 -0.8 -1.0 ABC transporter permease compare
PS417_15105 -0.8 -2.4 membrane protein compare
PS417_06200 -0.8 -2.9 protein-PII uridylyltransferase compare
PS417_06530 -0.8 -0.9 membrane protein compare
PS417_09575 -0.8 -1.7 glutathione S-transferase compare
PS417_09445 -0.8 -1.4 antibiotic biosynthesis monooxygenase compare
PS417_11865 -0.8 -1.6 xylose isomerase compare
PS417_06635 -0.8 -0.8 ferredoxin compare
PS417_10005 -0.8 -1.4 Pyocin large subunit-like protein compare
PS417_01030 -0.8 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_19650 -0.8 -1.8 chemotaxis protein CheW compare
PS417_03100 -0.8 -0.5 pilus assembly protein compare
PS417_23835 -0.8 -2.6 hypothetical protein compare
PS417_19590 -0.8 -1.6 enoyl-CoA hydratase compare
PS417_20520 -0.8 -1.4 3-phosphoglycerate kinase compare
PS417_12325 -0.8 -1.4 precorrin-4 C11-methyltransferase compare
PS417_04305 -0.8 -0.7 aspartate ammonia-lyase compare
PS417_20030 -0.8 -1.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_27745 -0.8 -1.9 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_18930 -0.8 -0.9 restriction endonuclease subunit S compare
PS417_23915 -0.8 -1.3 pantoate--beta-alanine ligase compare
PS417_14080 -0.8 -1.9 hypothetical protein compare
PS417_02485 -0.8 -1.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_14540 -0.8 -0.8 cytochrome C oxidase subunit III compare
PS417_04390 -0.8 -1.5 toluene tolerance protein compare
PS417_12910 -0.8 -1.6 alanine racemase compare
PS417_27245 -0.8 -1.6 aminotransferase DegT compare
PS417_16465 -0.7 -3.7 sirohydrochlorin ferrochelatase compare
PS417_27515 -0.7 -2.3 heme biosynthesis protein HemY compare
PS417_00465 -0.7 -1.4 hypothetical protein compare
PS417_24405 -0.7 -2.9 heme acquisition protein HasAp compare
PS417_02055 -0.7 -1.7 methyltransferase compare
PS417_07635 -0.7 -3.8 transcription-repair coupling factor compare
PS417_09800 -0.7 -2.3 cytosine deaminase compare
PS417_14535 -0.7 -1.6 alpha/beta hydrolase compare
PS417_26275 -0.7 -1.2 glycine/betaine ABC transporter substrate-binding protein compare
PS417_25710 -0.7 -0.9 indole-3-glycerol-phosphate synthase compare
PS417_08225 -0.7 -1.6 acetolactate synthase compare
PS417_10305 -0.7 -0.7 hypothetical protein compare
PS417_08185 -0.7 -1.9 glycosyl transferase compare
PS417_03385 -0.7 -0.7 flavin reductase compare
PS417_17705 -0.7 -1.4 LacI family transcriptional regulator compare
PS417_26730 -0.7 -0.6 pyrroline-5-carboxylate reductase compare
PS417_23995 -0.7 -0.5 preprotein translocase subunit SecG compare
PS417_03080 -0.7 -1.5 hypothetical protein compare
PS417_20980 -0.7 -2.1 uroporphyrin-III methyltransferase compare
PS417_13780 -0.7 -2.1 integrase compare
PS417_27110 -0.7 -2.2 spermidine/putrescine ABC transporter permease compare
PS417_23045 -0.7 -1.3 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_15035 -0.7 -0.8 alkylhydroperoxidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction control experiments