Experiment set15IT019 for Agrobacterium fabrum C58

Compare to:

Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu3544 -5.9 -12.3 arsenical pump membrane protein compare
Atu3311 -5.7 -17.8 phosphomannose isomerase compare
Atu2585 -5.5 -9.8 hypothetical protein compare
Atu3353 -5.4 -10.4 mannose-1-phosphate guanylyltransferase compare
Atu4149 -5.4 -13.9 UDP-glucose 6-dehydrogenase compare
Atu4617 -5.3 -11.7 dTDP-D-glucose-4,6-dehydratase compare
Atu4615 -5.0 -11.7 glucose-1-phosphate thymidylyltransferase compare
Atu2183 -5.0 -9.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0876 -5.0 -2.3 superoxide dismutase compare
Atu4613 -4.9 -12.8 glycosyltransferase compare
Atu0421 -4.9 -1.3 ABC transporter, membrane spanning protein compare
Atu4618 -4.8 -13.3 dTDP-rhamnose-3,5-epimerase compare
Atu2591 -4.8 -14.0 glucosyltransferase compare
Atu0659 -4.8 -6.2 NTP pyrophosphohydrolase, MutT family compare
Atu2584 -4.7 -7.0 hypothetical protein compare
Atu2684 -4.7 -2.2 hypothetical protein compare
Atu0039 -4.7 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu6098 -4.7 -1.3 transcriptional regulator, HTH family compare
Atu1030 -4.6 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4148 -4.5 -9.7 UDP-glucuronic acid epimerase compare
Atu1644 -4.4 -3.3 hypothetical protein compare
Atu0041 -4.4 -3.3 glutamine amidotransferase compare
Atu0602 -4.4 -11.7 glutamine synthetase compare
Atu2583 -4.3 -17.5 glycosyltransferase compare
Atu1359 -4.3 -1.2 dnaK deletion suppressor protein compare
Atu1646 -4.2 -5.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu4609 -4.1 -13.7 glycosyltransferase compare
Atu4166 -4.1 -2.2 UDP-glucose 4-epimerase compare
Atu2590 -4.1 -15.8 hypothetical protein compare
Atu2522 -4.0 -8.8 agrobacterium chromosomal virulence protein B compare
Atu2592 -4.0 -9.3 hypothetical protein compare
Atu4614 -3.9 -7.4 glycosyltransferase compare
Atu0537 -3.8 -8.4 histidinol dehydrogenase compare
Atu2728 -3.8 -3.7 beta (1-->2) glucan export ATP-binding protein compare
Atu4610 -3.7 -11.7 sugar nucleotide epimerase/dehydratase compare
Atu2582 -3.6 -10.0 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0030 -3.6 -1.7 phosphocarrier protein HPr compare
Atu0678 -3.5 -7.0 histidyl-tRNA synthetase compare
Atu0999 -3.5 -2.4 magnesium transport protein compare
Atu2207 -3.4 -5.1 two component sensor kinase compare
Atu1750 -3.4 -4.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu2577 -3.4 -19.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu8095 -3.4 -10.3 hypothetical protein compare
Atu4616 -3.4 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu0422 -3.3 -2.1 ABC transporter, membrane spanning protein compare
Atu2379 -3.3 -11.0 phosphomannomutase compare
Atu0434 -3.2 -2.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2439 -3.2 -1.2 hypothetical protein compare
Atu4608 -3.1 -9.0 hypothetical protein compare
Atu0040 -3.0 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1163 -2.9 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0086 -2.9 -1.1 ribosome-binding factor A compare
Atu1354 -2.8 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0368 -2.8 -4.9 tRNA pseudouridine synthase I compare
Atu0971 -2.8 -5.6 two component sensor kinase compare
Atu1647 -2.8 -6.5 ABC transporter, membrane spanning protein compare
Atu0601 -2.8 -7.0 oxidoreductase compare
Atu3707 -2.6 -2.9 phosphoserine aminotransferase compare
Atu0026 -2.6 -1.2 hypothetical protein compare
Atu0038 -2.6 -4.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0769 -2.5 -1.3 protoheme IX farnesyltransferase compare
Atu1021 -2.5 -2.8 outer membrane protein compare
Atu2554 -2.5 -2.8 lysyl-tRNA synthetase compare
Atu1645 -2.5 -5.5 ABC transporter, substrate binding protein compare
Atu0679 -2.4 -4.5 ATP phosphoribosyltransferase compare
Atu3908 -2.4 -8.9 GntR family transcriptional regulator compare
Atu4773 -2.4 -1.9 two component response regulator compare
Atu2125 -2.4 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu3469 -2.4 -3.6 phosphoglyceromutase compare
Atu3730 -2.3 -1.9 hypothetical protein compare
Atu4711 -2.3 -6.2 two component sensor kinase compare
Atu2040 -2.2 -4.3 phosphoserine phosphatase compare
Atu1417 -2.2 -5.4 enoyl-CoA hydratase compare
Atu1103 -2.2 -2.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4217 -2.1 -1.6 TetR family transcriptional regulator compare
Atu0331 -2.1 -2.9 sigma-54 modulation protein compare
Atu3697 -2.1 -5.7 ATP-dependent protease LA 2 compare
Atu1810 -2.0 -1.1 hypothetical protein compare
Atu3598 -2.0 -1.2 thiol:disulfide interchange protein compare
Atu3706 -2.0 -4.9 D-3-phosphoglycerate dehydrogenase compare
Atu0043 -2.0 -2.2 imidazoleglycerol-phosphate dehydratase compare
Atu4317 -2.0 -2.7 TetR family transcriptional regulator compare
Atu3727 -1.9 -4.5 hypothetical protein compare
Atu0977 -1.9 -4.1 serine protease DO-like protease compare
Atu6189 -1.8 -1.4 protein secretion chaperone compare
Atu5007 -1.8 -6.7 santhopine-responsive transcriptional repressor compare
Atu0050 -1.8 -4.7 two component response regulator compare
Atu1470 -1.8 -1.0 Camphor resistance protein compare
Atu3763 -1.8 -0.9 hypothetical protein compare
Atu0361 -1.8 -1.9 transcriptional regulator compare
Atu2057 -1.8 -2.7 DNA helicase II compare
Atu0190 -1.7 -4.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0978 -1.7 -5.7 two component response regulator compare
Atu8082 -1.7 -2.4 hypothetical protein compare
Atu3011 -1.7 -1.9 ArsR family transcriptional regulator compare
Atu1847 -1.7 -1.7 hypothetical protein compare
Atu5125 -1.7 -4.6 GntR family transcriptional regulator compare
Atu0141 -1.7 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu1619 -1.7 -1.9 protein-export membrane protein SECG compare
Atu0099 -1.7 -5.8 prephenate dehydratase compare
Atu3613 -1.7 -4.9 hypothetical protein compare
Atu3008 -1.7 -1.0 hypothetical protein compare
Atu2832 -1.7 -4.2 tRNA modification GTPase compare
Atu2296 -1.7 -5.6 2-dehydro-3-deoxygluconokinase compare
Atu2831 -1.6 -2.8 glucose inhibited division protein A compare
Atu1513 -1.6 -4.7 ABC excinuclease subunit A compare
Atu1904 -1.6 -2.7 transcriptional regulator compare
Atu0953 -1.6 -1.0 hypothetical protein compare
Atu1518 -1.6 -4.2 transcriptional regulator, Fur family compare
Atu2200 -1.6 -1.9 cold shock protein compare
Atu0784 -1.6 -2.4 hypothetical protein compare
Atu2113 -1.6 -3.1 N-acetylmuramoyl-L-alanine amidase compare
Atu1422 -1.6 -6.3 transcriptional regulator, MarR family compare
Atu0184 -1.5 -2.2 glucokinase compare
Atu1774 -1.5 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu2264 -1.5 -6.3 2-isopropylmalate synthase compare
Atu2821 -1.5 -3.2 transcriptional regulator, GntR family compare
Atu1760 -1.5 -1.2 hypothetical protein compare
Atu1902 -1.5 -3.7 transketolase compare
Atu1327 -1.5 -1.5 NADH-ubiquinone oxidoreductase compare
Atu4055 -1.5 -3.8 endo-1,3-1,4-beta-glycanase compare
Atu0912 -1.5 -0.8 Na+/H+ antiporter compare
Atu2718 -1.5 -4.2 homoserine O-succinyltransferase compare
Atu1076 -1.5 -3.2 colicin V production protein compare
Atu2685 -1.5 -7.0 aconitate hydratase compare
Atu0499 -1.4 -4.7 hypothetical protein compare
Atu3121 -1.4 -1.0 cold shock protein compare
Atu3739 -1.4 -2.9 phosphoglycerate kinase compare
Atu0029 -1.4 -3.7 S-adenosylhomocysteine hydrolase compare
Atu2036 -1.4 -7.4 acetolactate synthase III, large subunit compare
Atu1219 -1.4 -0.9 hypothetical protein compare
Atu0703 -1.4 -1.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1907 -1.4 -6.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu6131 -1.4 -3.9 TraR Antiactivator compare
Atu2722 -1.4 -5.2 porin compare
Atu1678 -1.4 -5.2 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu3018 -1.4 -2.8 hypothetical protein compare
Atu1688 -1.4 -3.3 indole-3-glycerol-phosphate synthase compare
Atu0726 -1.4 -4.5 ring hydroxylating dioxygenase, alpha-subunit compare
Atu4677 -1.3 -1.1 hypothetical protein compare
Atu3465 -1.3 -2.1 metallo-beta-lactamase superfamily protein compare
Atu2797 -1.3 -2.2 cobalamin biosynthesis protein compare
Atu1891 -1.3 -1.8 cobalamin biosynthesis protein compare
Atu1906 -1.3 -4.2 ABC transporter, membrane spanning protein compare
Atu8096 -1.3 -1.4 hypothetical protein compare
Atu0809 -1.3 -1.3 hypothetical protein compare
Atu0188 -1.3 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu0432 -1.3 -4.8 O-succinylhomoserine sulfhydrylase compare
Atu1364 -1.3 -3.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2289 -1.3 -7.5 anthranilate synthase component I and II compare
Atu0923 -1.3 -3.5 hypothetical protein compare
Atu1803 -1.3 -4.1 cold shock protein compare
Atu3144 -1.3 -4.7 GntR family transcriptional regulator compare
Atu0153 -1.3 -2.3 transcriptional regulator, Fur family compare
Atu1285 -1.2 -3.7 metal dependent hydrolase compare
Atu0925 -1.2 -1.7 hypothetical protein compare
Atu0777 -1.2 -0.9 hypothetical protein compare
Atu2464 -1.2 -3.1 formyltetrahydrofolate deformylase compare
Atu1739 -1.2 -3.2 permease compare
Atu1031 -1.2 -2.3 hypothetical protein compare
Atu3910 -1.2 -2.2 LamB/YcsF family protein compare
Atu1062 -1.2 -1.3 phosphatidylserine synthase compare
Atu4890 -1.2 -1.8 IS426 transposase compare
Atu0340 -1.2 -1.0 SAM dependent methyltransferase compare
Atu0237 -1.2 -2.4 hypothetical protein compare
Atu4323 -1.2 -5.2 ribitol 2-dehydrogenase compare
Atu2116 -1.2 -3.3 hypothetical protein compare
Atu3466 -1.2 -2.2 ArsR family transcriptional regulator compare
Atu0189 -1.2 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0837 -1.2 -2.7 transcriptional regulator, MarR family compare
Atu0339 -1.1 -2.7 hypothetical protein compare
Atu0647 -1.1 -3.7 phosphoribosylamine--glycine ligase compare
Atu1099 -1.1 -3.7 hypothetical protein compare
Atu0142 -1.1 -2.5 cytochrome o ubiquinol oxidase subunit II compare
Atu2245 -1.1 -5.0 Na+/Pi-cotransporter compare
Atu1677 -1.1 -1.5 queuine tRNA-ribosyltransferase compare
Atu1588 -1.1 -4.3 homoserine dehydrogenase compare
Atu4792 -1.1 -1.5 hypothetical protein compare
Atu3423 -1.1 -1.4 hypothetical protein compare
Atu4162 -1.1 -4.6 two-component response regulator compare
Atu3014 -1.1 -1.7 hypothetical protein compare
Atu4514 -1.1 -1.7 RpiR family transcriptional regulator compare
Atu4160 -1.1 -4.3 RNA polymerase sigma factor compare
Atu8118 -1.1 -3.4 putative universal stress protein compare
Atu0388 -1.0 -4.9 two component sensor kinase compare
Atu8191 -1.0 -1.3 hypothetical protein compare
Atu4502 -1.0 -2.6 cobalamin synthesis protein compare
Atu8183 -1.0 -3.3 hypothetical protein compare
Atu3780 -1.0 -3.9 hypothetical protein compare
Atu2115 -1.0 -4.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1707 -1.0 -4.0 hypothetical protein compare
Atu3265 -1.0 -2.8 hypothetical protein compare
Atu1127 -1.0 -1.6 molybdopterin converting factor small subunit compare
Atu1689 -1.0 -3.4 molybdenum cofactor biosynthesis protein C compare
Atu0430 -1.0 -4.8 chaperonin (heat shock protein hsp33) compare
Atu0836 -1.0 -2.0 Glutathione-S-transferase compare
Atu2432 -1.0 -1.8 hypothetical protein compare
Atu1546 -1.0 -2.1 transcriptional regulator, MerR family compare
Atu3182 -1.0 -1.8 hypothetical protein compare
Atu0886 -1.0 -0.9 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms