Experiment set15IT019 for Agrobacterium fabrum C58

Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

Group: in planta
Media: Wheat_7dpi + Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Culturing: Agro_ML11, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 10/20/22

Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms

SEED Subsystems

Subsystem	#Specific
D-Galacturonate and D-Glucuronate Utilization	1
D-gluconate and ketogluconates metabolism	1
Entner-Doudoroff Pathway	1
Proteasome bacterial	1
Queuosine-Archaeosine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions
• Pentose phosphate pathway
• Biosynthesis of steroids
• Lipopolysaccharide biosynthesis
• Carotenoid biosynthesis - General

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
D-fructuronate degradation	4	4	1
queuosine biosynthesis I (de novo)	4	3	1
4-deoxy-L-threo-hex-4-enopyranuronate degradation	5	5	1
D-galacturonate degradation I	5	3	1
queuosine biosynthesis III (queuosine salvage)	5	2	1
superpathway of β-D-glucuronosides degradation	7	5	1
3,6-anhydro-α-L-galactopyranose degradation	7	4	1
alginate degradation	7	4	1
Entner-Doudoroff pathway III (semi-phosphorylative)	9	7	1
superpathway of hexuronide and hexuronate degradation	10	6	1
superpathway of microbial D-galacturonate and D-glucuronate degradation	31	22	1