Experiment set15IT018 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PS417_27865 -7.8 -3.0 LysR family transcriptional regulator compare
PS417_24745 -6.3 -4.0 gamma-glutamyl phosphate reductase compare
PS417_27795 -5.3 -1.1 orotate phosphoribosyltransferase compare
PS417_02280 -4.9 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_06375 -4.8 -1.0 deoxycytidine triphosphate deaminase compare
PS417_23545 -4.5 -2.3 gamma-glutamyl kinase compare
PS417_22450 -4.2 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_22565 -4.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_01580 -4.1 -1.1 imidazole glycerol phosphate synthase compare
PS417_21430 -4.0 -1.8 3-oxoacyl-ACP synthase compare
PS417_18055 -3.9 -1.1 general secretion pathway protein GspK compare
PS417_17215 -3.8 -4.3 peptidylprolyl isomerase compare
PS417_27195 -3.7 -1.0 N-acetylglutamate synthase compare
PS417_11705 -3.6 -5.9 cyclic peptide transporter compare
PS417_18310 -3.6 -1.2 hypothetical protein compare
PS417_01915 -3.4 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02385 -3.2 -1.3 esterase compare
PS417_27640 -3.1 -1.2 TetR family transcriptional regulator compare
PS417_19350 -3.1 -4.0 GTP cyclohydrolase compare
PS417_26470 -3.0 -1.7 cytochrome C compare
PS417_20985 -2.9 -1.4 porin compare
PS417_05365 -2.8 -1.9 FAD-binding protein compare
PS417_04365 -2.8 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15465 -2.8 -3.6 carboxynorspermidine decarboxylase compare
PS417_04650 -2.7 -0.7 D-alanine--D-alanine ligase compare
PS417_28315 -2.6 -3.4 zinc ABC transporter permease compare
PS417_27800 -2.6 -1.8 exodeoxyribonuclease III compare
PS417_28145 -2.6 -2.9 AraC family transcriptional regulator compare
PS417_08125 -2.6 -0.5 prephenate dehydratase compare
PS417_00180 -2.6 -2.0 tryptophan synthase subunit alpha compare
PS417_05160 -2.5 -1.0 DNA polymerase III subunit chi compare
PS417_26420 -2.5 -1.1 hypothetical protein compare
PS417_23770 -2.4 -1.5 exodeoxyribonuclease V subunit alpha compare
PS417_01630 -2.4 -1.6 hypothetical protein compare
PS417_15135 -2.3 -1.3 hypothetical protein compare
PS417_02720 -2.3 -0.9 TetR family transcriptional regulator compare
PS417_08135 -2.3 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22520 -2.3 -1.5 histidine kinase compare
PS417_02270 -2.3 -3.5 carbamoyltransferase compare
PS417_07170 -2.3 -4.2 hypothetical protein compare
PS417_20785 -2.3 -3.2 transcriptional regulator compare
PS417_21630 -2.2 -1.8 magnesium transporter compare
PS417_00510 -2.2 -1.0 membrane protein compare
PS417_00370 -2.2 -1.0 hypothetical protein compare
PS417_27340 -2.2 -2.8 NADPH:quinone oxidoreductase compare
PS417_08090 -2.2 -0.6 3-oxoacyl-ACP reductase compare
PS417_04385 -2.1 -3.4 organic solvent ABC transporter substrate-binding protein compare
PS417_21625 -2.1 -0.9 DNA-binding protein compare
PS417_20855 -2.1 -1.1 hypothetical protein compare
PS417_22000 -2.0 -2.3 glutathione S-transferase compare
PS417_19065 -2.0 -0.9 monooxygenase compare
PS417_04380 -2.0 -0.7 ABC transporter permease compare
PS417_19835 -2.0 -1.3 flagellar biosynthesis protein FliS compare
PS417_02975 -2.0 -3.0 3-dehydroquinate dehydratase compare
PS417_13305 -2.0 -1.1 hypothetical protein compare
PS417_03525 -1.9 -1.3 hypothetical protein compare
PS417_04875 -1.9 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_08245 -1.9 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_06600 -1.9 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_05815 -1.9 -3.3 recombinase RecA compare
PS417_27135 -1.8 -0.6 glutamine synthetase compare
PS417_03560 -1.8 -1.2 GTP-binding protein compare
PS417_06540 -1.8 -1.3 membrane protein compare
PS417_18545 -1.8 -1.4 cell division protein compare
PS417_23025 -1.8 -4.3 murein transglycosylase compare
PS417_22085 -1.8 -1.9 aldehyde dehydrogenase compare
PS417_09210 -1.8 -1.1 TetR family transcriptional regulator compare
PS417_24895 -1.7 -1.2 hypothetical protein compare
PS417_19600 -1.7 -0.9 exonuclease compare
PS417_17675 -1.7 -1.0 ABC transporter compare
PS417_07140 -1.7 -2.7 peptidase M48 compare
PS417_24370 -1.7 -0.6 (2Fe-2S)-binding protein compare
PS417_01195 -1.7 -1.9 RNA-binding protein S4 compare
PS417_05560 -1.7 -1.9 ABC transporter compare
PS417_26730 -1.7 -0.8 pyrroline-5-carboxylate reductase compare
PS417_19955 -1.7 -1.4 hypothetical protein compare
PS417_00755 -1.6 -0.4 biofilm PGA synthesis protein PgaD compare
PS417_26230 -1.6 -2.0 electron transfer flavoprotein subunit alpha compare
PS417_01575 -1.6 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_07560 -1.6 -1.1 universal stress protein UspA compare
PS417_13455 -1.6 -2.0 alkaline proteinase inhibitor compare
PS417_13620 -1.6 -1.3 thermostable hemolysin compare
PS417_09590 -1.6 -4.2 membrane protein compare
PS417_23095 -1.6 -0.8 exodeoxyribonuclease compare
PS417_19675 -1.6 -2.4 chemotaxis protein CheY compare
PS417_05695 -1.6 -3.6 transcriptional regulator compare
PS417_17805 -1.6 -1.7 microcin B17 processing protein McbC compare
PS417_14590 -1.5 -1.3 LysR family transcriptional regulator compare
PS417_06145 -1.5 -0.8 hypothetical protein compare
PS417_04275 -1.5 -8.2 hypothetical protein compare
PS417_15540 -1.5 -0.9 NUDIX hydrolase compare
PS417_02670 -1.5 -2.2 ABC transporter compare
PS417_21830 -1.5 -2.3 TetR family transcriptional regulator compare
PS417_20775 -1.5 -2.5 coproporphyrinogen III oxidase compare
PS417_24705 -1.5 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_19195 -1.5 -2.0 hypothetical protein compare
PS417_01285 -1.5 -1.3 haloacid dehalogenase compare
PS417_03455 -1.4 -1.1 type III secretion protein compare
PS417_22575 -1.4 -5.1 exonuclease I compare
PS417_21125 -1.4 -3.4 phosphoadenosine phosphosulfate reductase compare
PS417_12855 -1.4 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23135 -1.4 -1.2 GTP-binding protein compare
PS417_27520 -1.4 -2.5 uroporphyrin-III methyltransferase compare
PS417_22050 -1.4 -3.5 ribonuclease BN compare
PS417_12650 -1.4 -1.7 magnesium transporter compare
PS417_28220 -1.4 -1.6 LysR family transcriptional regulator compare
PS417_02765 -1.4 -1.0 phosphate starvation-inducible protein PsiF compare
PS417_04585 -1.4 -1.1 hypothetical protein compare
PS417_27425 -1.4 -4.8 exopolyphosphatase compare
PS417_16665 -1.4 -1.2 hypothetical protein compare
PS417_22570 -1.4 -0.6 H-NS histone compare
PS417_21480 -1.4 -1.0 23S rRNA pseudouridylate synthase compare
PS417_16510 -1.4 -2.6 Clp protease ClpX compare
PS417_26120 -1.3 -1.6 hypothetical protein compare
PS417_15390 -1.3 -1.6 hypothetical protein compare
PS417_03260 -1.3 -1.0 5S ribosomal RNA compare
PS417_14605 -1.3 -1.8 adenylate kinase compare
PS417_01565 -1.3 -4.1 imidazole glycerol phosphate synthase compare
PS417_09035 -1.3 -2.0 hypothetical protein compare
PS417_23160 -1.3 -2.3 50S rRNA methyltransferase compare
PS417_02365 -1.3 -2.0 hypothetical protein compare
PS417_06680 -1.3 -3.9 nuclease PIN compare
PS417_26815 -1.3 -1.3 peptidase M16 compare
PS417_04375 -1.3 -1.5 ABC transporter ATP-binding protein compare
PS417_06490 -1.3 -2.2 hypothetical protein compare
PS417_16815 -1.3 -1.6 acyl-CoA dehydrogenase compare
PS417_19620 -1.2 -1.1 hypothetical protein compare
PS417_18090 -1.2 -2.1 iron ABC transporter compare
PS417_02415 -1.2 -2.5 phosphoserine phosphatase compare
PS417_11615 -1.2 -0.9 urea ABC transporter ATP-binding protein compare
PS417_21655 -1.2 -0.8 aspartate kinase compare
PS417_08545 -1.2 -0.8 aromatic ring-opening dioxygenase LigB compare
PS417_27315 -1.2 -0.8 hypothetical protein compare
PS417_00085 -1.2 -1.0 16S rRNA methyltransferase compare
PS417_27245 -1.2 -2.0 aminotransferase DegT compare
PS417_08535 -1.2 -1.7 enoyl-CoA hydratase compare
PS417_07770 -1.2 -1.1 hypothetical protein compare
PS417_16535 -1.2 -1.5 NUDIX hydrolase compare
PS417_24240 -1.2 -2.9 membrane protein compare
PS417_19305 -1.2 -1.9 acireductone dioxygenase compare
PS417_07710 -1.2 -3.0 membrane protein compare
PS417_08025 -1.2 -0.9 acetylornithine aminotransferase compare
PS417_19020 -1.2 -3.3 dimethylmenaquinone methyltransferase compare
PS417_16245 -1.2 -2.6 Fis family transcriptional regulator compare
PS417_07640 -1.1 -1.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20365 -1.1 -1.8 Cro/Cl family transcriptional regulator compare
PS417_27215 -1.1 -1.9 hypothetical protein compare
PS417_03075 -1.1 -1.6 hypothetical protein compare
PS417_23810 -1.1 -4.1 acetolactate synthase 3 catalytic subunit compare
PS417_01510 -1.1 -1.4 hypothetical protein compare
PS417_23390 -1.1 -2.5 ubiquinol oxidase subunit II compare
PS417_14140 -1.1 -1.3 membrane protein compare
PS417_06400 -1.1 -2.1 succinylglutamate desuccinylase compare
PS417_09580 -1.1 -1.7 tyrosyl-trna synthetase compare
PS417_26370 -1.1 -2.5 RNA helicase compare
PS417_08685 -1.1 -0.8 flagellar hook-length control protein FliK compare
PS417_26985 -1.1 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07410 -1.1 -1.3 hypothetical protein compare
PS417_23805 -1.1 -2.2 acetolactate synthase 3 regulatory subunit compare
PS417_02890 -1.1 -1.5 cobalt-precorrin-6X reductase compare
PS417_02070 -1.1 -0.6 membrane protein compare
PS417_04595 -1.1 -1.2 cell division protein MraZ compare
PS417_27040 -1.1 -1.2 3-phosphoglycerate dehydrogenase compare
PS417_09600 -1.1 -2.2 glycosyl transferase family 1 compare
PS417_25270 -1.1 -1.0 NrdR family transcriptional regulator compare
PS417_08650 -1.1 -1.2 transcriptional regulator compare
PS417_13300 -1.1 -1.3 short-chain dehydrogenase compare
PS417_23510 -1.1 -1.8 HopJ type III effector protein compare
PS417_12520 -1.1 -1.7 hypothetical protein compare
PS417_04090 -1.1 -1.8 hypothetical protein compare
PS417_11055 -1.0 -1.3 AraC family transcriptional regulator compare
PS417_01140 -1.0 -1.9 taurine ABC transporter permease compare
PS417_23880 -1.0 -2.7 glutamyl-Q tRNA(Asp) ligase compare
PS417_22350 -1.0 -1.0 Fis family transcriptional regulator compare
PS417_14240 -1.0 -1.7 isochorismatase compare
PS417_23910 -1.0 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_16060 -1.0 -1.8 protein tolQ compare
PS417_07305 -1.0 -0.8 3-beta hydroxysteroid dehydrogenase compare
PS417_18930 -1.0 -0.9 restriction endonuclease subunit S compare
PS417_28350 -1.0 -2.8 fatty acid methyltransferase compare
PS417_22775 -1.0 -4.3 histidine kinase compare
PS417_11520 -1.0 -1.9 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_15285 -1.0 -0.7 type VI secretion protein compare
PS417_09245 -1.0 -0.7 recombinase RdgC compare
PS417_17590 -1.0 -1.0 ABC transporter substrate-binding protein compare
PS417_14805 -1.0 -1.0 AraC family transcriptional regulator compare
PS417_11100 -1.0 -1.7 MocE compare
PS417_11945 -1.0 -1.3 hypothetical protein compare
PS417_08365 -1.0 -0.5 hypothetical protein compare
PS417_14105 -1.0 -1.7 6-O-methylguanine DNA methyltransferase compare
PS417_26510 -1.0 -3.2 5,10-methylenetetrahydrofolate reductase compare
PS417_03005 -1.0 -2.9 arginine decarboxylase compare
PS417_10340 -1.0 -1.7 alcohol dehydrogenase compare
PS417_24495 -1.0 -1.2 NAD(FAD)-utilizing dehydrogenase compare
PS417_16715 -1.0 -0.8 DoxX family protein compare
PS417_26345 -1.0 -3.2 choline dehydrogenase compare
PS417_26720 -1.0 -2.2 twitching motility protein PilT compare
PS417_04565 -1.0 -2.6 cell envelope biogenesis protein OmpA compare
PS417_09615 -1.0 -2.9 glycosyl transferase family 1 compare
PS417_00075 -1.0 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction control experiments